Module _basic_

Classes

ComparingTracer

ComparingTracerAP

ComparingTracerCAP

DynamicProfileThis

DynamicProfileThisAP

DynamicProfileThisCAP

Emitter

MetricValueBase

MetricValueBaseAP

MetricValueBaseCAP

ProfTag

PyTracer

Tracer

TracerAP

TracerManagerAP

TracerManagerCAP

TracerOptionsAP

TracerOptionsCAP

TracerToFileCAP

__CPP_MetricValueBase__

__CPP_PyTracer__

basic_otstream_T_char_std_char_traits_T_char_T__T

basic_otstream_T_char_std_char_traits_T_char_T__TAP

basic_otstream_T_char_std_char_traits_T_char_T__TCAP

Functions

Error

T

Warning

get_boolean_option

get_boolean_vector_option

get_file_option

get_file_vector_option

get_integer_option

get_integer_vector_option

get_pymol_chain

get_pymol_chain_index_1

get_pymol_num_unique_ids

get_real_option

get_string_option

get_string_vector_option

get_usage_from_procfilesystem

handles_metric_value

init

interpolate_2d_func_of_angles

interpolate_bilinear

interpolate_bilinear_by_value

interpolate_get_angle_bins

interpolate_trilinear

interpolate_trilinear_by_value

prof_start_function_body

prof_stop_function_body

read_metric_value

set_boolean_option

set_boolean_vector_option

set_file_option

set_file_vector_option

set_integer_option

set_integer_vector_option

set_real_option

set_string_option

set_string_vector_option

subtract_degree_angles

subtract_radian_angles

unsigned_periodic_range

was_init_called

write_metric_value

Variables

ABINITIO

ARCHIVE_BLOCK_FILE

ARCHIVE_CRITICAL_JOBSCOMPLETE

ARCHIVE_EVALUATORS

ARCHIVE_EVAL_DECOYS

ARCHIVE_FILL_POSE

ARCHIVE_GEN_BATCH

ARCHIVE_JOBSCOMPLETE

ARCHIVE_READ_DECOYS

ARCHIVE_SCORE_POSE

ARCHIVE_SYNC_BATCHES

ATOM_TREE_UPDATE_INTERNAL_COORDS

ATOM_TREE_UPDATE_XYZ_COORDS

CANONICALMOVER_WRITE_TO_FILE

CA_DME_EVALUATION

CA_RMSD_EVALUATION

CHECK_COMM_SIZE

CHEMICAL_MAKE_POSE

COMM_REDUCE_SIZE

CONFORMATION_COPY

CONFORMATION_DETECT_DISULF

CONFORMATION_FIX_DISULF

CONSTRAINT_SCORE

CONSTRAINT_SET_COPY

CONSTRUCT_DISTANCE_MATRIX

DALPHABALL_DERIV

DFUNC

ENERGY_ENVPAIR_POTENTIAL

ENERGY_GRAPH_COPY

FACTS_GET_ALL_BORN_RADII

FACTS_ROTAMER_BACKGROUND_ENERGIES

FACTS_ROTAMER_PAIR_ENERGIES

FACTS_SETUP_FOR_PACKING

FARRAY_MANIPULATION

FINALIZE

FIND_SUGAR_AND_SUITE_FRAGS_I

FIND_SUGAR_AND_SUITE_FRAGS_II

FRAGMENTPICKING

FRAGMENTPICKING_ATOMPAIR_SCORE

FRAGMENTPICKING_CANDIDATES_COLLECTING

FRAGMENTPICKING_CS_SCORE

FRAGMENTPICKING_DIHEDRALCONSTR_SCORE

FRAGMENTPICKING_PHIPSI_SCORE

FRAGMENTPICKING_PROFILE_CAHING

FRAGMENTPICKING_PROFILE_SCORE

FRAGMENTPICKING_READ_VALL

FRAGMENTPICKING_SECONDARY_SCORE

FUNC

GB_GET_ALL_BORN_RADII

GB_SETUP_FOR_PACKING

GEN_BORN_ROTAMER_BACKGROUND_ENERGIES

GEN_BORN_ROTAMER_PAIR_ENERGIES

HIERARCHICAL_ADD

HIERARCHICAL_ADD_ELEM_TO_CACHE

HIERARCHICAL_EVALUATE

HIERARCHICAL_FIND

HIERARCHICAL_FIND_ADDRESS

HIERARCHICAL_POOL_SIZE

HIERARCHICAL_ROUND

HIERARCHICAL_SORT_ADDRESSES

HIERARCHY_FIND_ADDRESS

HIERARCHY_GET_NEXT_CANDIDATE

HIERARCHY_RECV_COORDS

HIERARCHY_SEND_COORDS

HIERARCHY_SETUP_TO_RECV

INITIALIZE_HIERARCHY

JD2

JD2_SILENT_OUTPUTTER

KDTREE_CONSTRUCT

MAKE_BASE_PAIR_MOVE

MAKE_BASE_STEP_MOVE

MASTER_PROCESS_NEW_STRUCTURES

MPIBARRIER_BEGIN

MPICANONICALSAMPLING

MPICOMMCREATION

MPIH_ADD_FIRST_STRUCTURE

MPIH_EVAL_AGAINST_NBR

MPIH_EVAL_CHECK_PROGRESS

MPIH_EVAL_COMMUNICATE_NEW

MPIH_PREPARE_WRITE_STRUCTURES

MPIH_UPDATE_EVAL

MPIH_WRITE_STRUCT

MPIPOOLCOMMUNICATION

MPI_GATHER_BARRIER

MPI_JD2_WAITS_FOR_ARCHIVE

MPI_MASTER_BCAST_COORDS

MPI_MASTER_BCAST_NEW_COMM_SIZE

MPI_MASTER_BCAST_NEW_POOL_RANKS

MPI_MASTER_BCAST_NUM_STRUCTURES_TO_ADD

MPI_MASTER_BCAST_WINNING_RANKS

MPI_MASTER_BCAST_WINNING_STRUCTURES

MPI_NOTIFY_ARCHIVE

MPI_POOL_MASTER_THINKS

MPI_POOL_SLAVE_THINKS

MPI_SEND_ACCEPTED

MPI_SEND_UPDATE

MPI_SLAVE_REPORT_NEW_COORDS

MPI_SLAVE_REPORT_SIZES

MPI_SYNC_POOL_DIFF

NOESY_ASSIGN_CALIBRATE

NOESY_ASSIGN_CHEMSHIFT

NOESY_ASSIGN_CP_GEN_CST

NOESY_ASSIGN_DECOY_COMP

NOESY_ASSIGN_DIAGONAL

NOESY_ASSIGN_DISTANCE

NOESY_ASSIGN_DIST_APPLY

NOESY_ASSIGN_DIST_CST_CAST

NOESY_ASSIGN_DIST_CST_EVAL

NOESY_ASSIGN_DIST_INIT

NOESY_ASSIGN_DIST_MAKE_POSE

NOESY_ASSIGN_DIST_PREP_SCORE

NOESY_ASSIGN_DIST_SET_COMPABILITY_SCORE

NOESY_ASSIGN_ELIMINATE

NOESY_ASSIGN_GEN_CST

NOESY_ASSIGN_INITIAL

NOESY_ASSIGN_MAP2CB

NOESY_ASSIGN_MAP2CB_NEW

NOESY_ASSIGN_NETWORK

NOESY_ASSIGN_NETWORK_COMPUTE_NK

NOESY_ASSIGN_NETWORK_FILL_COV_GAMMA

NOESY_ASSIGN_NETWORK_FIND_RAW_ASSIGN

NOESY_ASSIGN_NETWORK_INVALIDATE_SEQ_NOE

NOESY_ASSIGN_NETWORK_PEAK_COUNT

NOESY_ASSIGN_NETWORK_PEAK_COUNT_EVAL

NOESY_ASSIGN_NETWORK_RETRIEVE_ASSIGN

NOESY_ASSIGN_NETWORK_TOTAL

NOESY_ASSIGN_NMR_STRING

NOESY_ASSIGN_PA_GEN_CST

NOESY_ASSIGN_READ_INPUT

NOESY_ASSIGN_REQUIRES_CB_MAPPING

NOESY_ASSIGN_SYMMETRY

NOESY_ASSIGN_TOTAL

NOESY_ASSIGN_UPDATE_PEAK_VOL

NOESY_ASSIGN_WRITE_ASSIGNMENTS

NOESY_ASSIGN_WRITE_CST

POOL_RMSD_ADD_STRUCTURE

POOL_RMSD_EVALUATE

POOL_RMSD_MASTER_EVALUATE

RG

RG_LOCAL

SAXS

SCORE

SCORE_BEGIN_NOTIFY

SCORE_END_NOTIFY

SCORE_LONG_RANGE_ENERGIES

SCORE_NEIGHBOR_ENERGIES

SCORE_ONEBODY_ENERGIES

SECONDARY_STRUCTURE_ENERGY

SECONDARY_STRUCTURE_HSPAIR_ENERGY

SECONDARY_STRUCTURE_SHEETS_FROM_DIMERS_ENERGY

SECONDARY_STRUCTURE_SSPAIR_ENERGY

SEQUENCE_COMPARISON

SIDECHAINMCMOVER

SILENT_FILL_POSE

SILENT_FILL_STRUCT

SILENT_READ_TAG_TEST

SILENT_SET_POSE_COORDS

STAGE1

STAGE2

STAGE3

STAGE4

STAGE5

TEST1

TEST2

TEST3

TEST4

TEST5

TOTAL

TRUNCATED_SCORE_EVALUATOR

UPDATE_RESIDUE_COORDINATES

UPDATE_RESIDUE_NEIGHBORS

UPDATE_RESIDUE_TORSIONS

WRITE_DECOYS_TO_HIERARCHY

t_debug

t_error

t_fatal

t_info

t_trace