Module _protocols_dna_
Classes
DNABase
DNABaseAP
DNABaseCAP
DNABasepair
DNABasepairAP
DNABasepairCAP
DNABasestep
DNABasestepAP
DNABasestepCAP
DNAParameters
DNAParametersAP
DNAParametersCAP
DesignProteinBackboneAroundDNA
DesignProteinBackboneAroundDNAAP
DesignProteinBackboneAroundDNACAP
DesignProteinBackboneAroundDNACreator
DesignProteinBackboneAroundDNACreatorAP
DesignProteinBackboneAroundDNACreatorCAP
DnaChains
DnaChainsAP
DnaChainsCAP
DnaDesignDef
DnaDesignDefAP
DnaDesignDefCAP
DnaInterfaceFinder
DnaInterfaceFinderAP
DnaInterfaceFinderCAP
DnaInterfaceMinMover
DnaInterfaceMinMoverAP
DnaInterfaceMinMoverCAP
DnaInterfaceMinMoverCreator
DnaInterfaceMinMoverCreatorAP
DnaInterfaceMinMoverCreatorCAP
DnaInterfaceMultiStateDesign
DnaInterfaceMultiStateDesignAP
DnaInterfaceMultiStateDesignCAP
DnaInterfaceMultiStateDesignCreator
DnaInterfaceMultiStateDesignCreatorAP
DnaInterfaceMultiStateDesignCreatorCAP
DnaInterfacePacker
DnaInterfacePackerAP
DnaInterfacePackerCAP
DnaInterfacePackerCreator
DnaInterfacePackerCreatorAP
DnaInterfacePackerCreatorCAP
DnaNeighbor
DnaNeighborAP
DnaNeighborCAP
DnaPosition
DnaPositionAP
DnaPositionCAP
PDBOutput
PDBOutputAP
PDBOutputCAP
PositionType
PositionTypeAP
PositionTypeCAP
ResTypeSequence_lt
ResTypeSequence_ltAP
ResTypeSequence_ltCAP
RestrictDesignToProteinDNAInterface
RestrictDesignToProteinDNAInterfaceAP
RestrictDesignToProteinDNAInterfaceCAP
RestrictDesignToProteinDNAInterfaceCreator
RestrictDesignToProteinDNAInterfaceCreatorAP
RestrictDesignToProteinDNAInterfaceCreatorCAP
RotamerDNAHBondFilter
RotamerDNAHBondFilterAP
RotamerDNAHBondFilterCAP
SeparateDnaFromNonDna
SeparateDnaFromNonDnaAP
SeparateDnaFromNonDnaCAP
SeparateDnaFromNonDnaCreator
SeparateDnaFromNonDnaCreatorAP
SeparateDnaFromNonDnaCreatorCAP
SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase_T_core_chemical_ChemicalManager_TAP
SingletonBase_T_core_chemical_ChemicalManager_TCAP
WatsonCrickRotamerCouplings
WatsonCrickRotamerCouplingsAP
WatsonCrickRotamerCouplingsCAP
WatsonCrickRotamerCouplingsCreator
WatsonCrickRotamerCouplingsCreatorAP
WatsonCrickRotamerCouplingsCreatorCAP
__CPP_DesignProteinBackboneAroundDNACreator__
__CPP_DesignProteinBackboneAroundDNA__
__CPP_DnaInterfaceMinMoverCreator__
__CPP_DnaInterfaceMinMover__
__CPP_DnaInterfaceMultiStateDesignCreator__
__CPP_DnaInterfaceMultiStateDesign__
__CPP_DnaInterfacePackerCreator__
__CPP_DnaInterfacePacker__
__CPP_PDBOutput__
__CPP_RestrictDesignToProteinDNAInterfaceCreator__
__CPP_RestrictDesignToProteinDNAInterface__
__CPP_RotamerDNAHBondFilter__
__CPP_SeparateDnaFromNonDnaCreator__
__CPP_SeparateDnaFromNonDna__
__CPP_WatsonCrickRotamerCouplingsCreator__
__CPP_WatsonCrickRotamerCouplings__
Functions
add_constraints_from_file
argrot_dna_dis2
checkpoint_cleanup
close_to_dna
contact_distance2
design_residues_list
dna_base_partner
dna_comp_name_str
dna_full_name3
find_basepairs
load_checkpoint
load_dna_design_defs_from_file
load_dna_design_defs_from_options
load_dna_design_defs_from_strings
make_base_pair_aware_fold_tree
make_sequence_combinations
make_single_mutants
make_subdirs
not_already_connected
print_sequence_pdb_nums
print_sequences_pdb_nums
restrict_dna_rotamers
restrict_to_single_sequence
seq_pdb_str
seq_to_str
set_base_segment_chainbreak_constraints
substitute_residue
write_checkpoint
z_axis_dist
Variables
__package__
[
hide private
]