Module _protocols_simple_moves_
Classes
AddCavitiesMover
AddCavitiesMoverAP
AddCavitiesMoverCAP
AddChainMover
AddChainMoverAP
AddChainMoverCAP
AddChainMoverCreator
AddChainMoverCreatorAP
AddChainMoverCreatorCAP
AddConstraintsToCurrentConformationMover
AddConstraintsToCurrentConformationMoverAP
AddConstraintsToCurrentConformationMoverCAP
AddConstraintsToCurrentConformationMoverCreator
AddConstraintsToCurrentConformationMoverCreatorAP
AddConstraintsToCurrentConformationMoverCreatorCAP
AddJobPairData
AddJobPairDataAP
AddJobPairDataCAP
AddJobPairDataCreator
AddJobPairDataCreatorAP
AddJobPairDataCreatorCAP
AlignChainMover
AlignChainMoverAP
AlignChainMoverCAP
AlignChainMoverCreator
AlignChainMoverCreatorAP
AlignChainMoverCreatorCAP
BBConRotMover
BBConRotMoverAP
BBConRotMoverCAP
BBG8T3AMover
BBG8T3AMoverAP
BBG8T3AMoverCAP
BBGaussianMover
BBGaussianMoverAP
BBGaussianMoverCAP
BBGaussianMoverCreator
BBGaussianMoverCreatorAP
BBGaussianMoverCreatorCAP
BackboneMover
BackboneMoverAP
BackboneMoverCAP
BoltzmannRotamerMover
BoltzmannRotamerMoverAP
BoltzmannRotamerMoverCAP
BoltzmannRotamerMoverCreator
BoltzmannRotamerMoverCreatorAP
BoltzmannRotamerMoverCreatorCAP
ChainGroupDiscriminator
ChainGroupDiscriminatorAP
ChainGroupDiscriminatorCAP
ChainSplitMover
ChainSplitMoverAP
ChainSplitMoverCAP
ChangeAndResetFoldTreeMover
ChangeAndResetFoldTreeMoverAP
ChangeAndResetFoldTreeMoverCAP
ChangeAndResetFoldTreeMoverCreator
ChangeAndResetFoldTreeMoverCreatorAP
ChangeAndResetFoldTreeMoverCreatorCAP
ClassicFragmentMover
ClassicFragmentMoverAP
ClassicFragmentMoverCAP
ClearConstraintsMover
ClearConstraintsMoverAP
ClearConstraintsMoverCAP
ClearConstraintsMoverCreator
ClearConstraintsMoverCreatorAP
ClearConstraintsMoverCreatorCAP
CombinePoseMover
CombinePoseMoverAP
CombinePoseMoverCAP
ConsensusDesignMover
ConsensusDesignMoverAP
ConsensusDesignMoverCAP
ConsensusDesignMoverCreator
ConsensusDesignMoverCreatorAP
ConsensusDesignMoverCreatorCAP
ConstrainToIdealMover
ConstrainToIdealMoverAP
ConstrainToIdealMoverCAP
ConstraintSetMover
ConstraintSetMoverAP
ConstraintSetMoverCAP
ConstraintSetMoverCreator
ConstraintSetMoverCreatorAP
ConstraintSetMoverCreatorCAP
ContingentAcceptMover
ContingentAcceptMoverAP
ContingentAcceptMoverCAP
ContingentAcceptMoverCreator
ContingentAcceptMoverCreatorAP
ContingentAcceptMoverCreatorCAP
CopyDofMover
CopyDofMoverAP
CopyDofMoverCAP
CoupledMover
CoupledMoverAP
CoupledMoverCAP
CoupledMoverCreator
CoupledMoverCreatorAP
CoupledMoverCreatorCAP
CutChainMover
CutChainMoverAP
CutChainMoverCAP
CutChainMoverCreator
CutChainMoverCreatorAP
CutChainMoverCreatorCAP
CyclizationMover
CyclizationMoverAP
CyclizationMoverCAP
DME_FilterMover
DME_FilterMoverAP
DME_FilterMoverCAP
DOFHistogramRecorder
DOFHistogramRecorderAP
DOFHistogramRecorderCAP
DeleteChainsMover
DeleteChainsMoverAP
DeleteChainsMoverCAP
DeleteChainsMoverCreator
DeleteChainsMoverCreatorAP
DeleteChainsMoverCreatorCAP
DesignRepackMover
DesignRepackMoverAP
DesignRepackMoverCAP
DisulfideCyclizationViability
DisulfideInsertionMover
DisulfideInsertionMoverAP
DisulfideInsertionMoverCAP
DisulfideInsertionMoverCreator
DisulfideInsertionMoverCreatorAP
DisulfideInsertionMoverCreatorCAP
DumpPdb
DumpPdbAP
DumpPdbCAP
DumpPdbCreator
DumpPdbCreatorAP
DumpPdbCreatorCAP
EnergyCutRotamerTrialsMinMover
EnergyCutRotamerTrialsMinMoverAP
EnergyCutRotamerTrialsMinMoverCAP
EnergyCutRotamerTrialsMover
EnergyCutRotamerTrialsMoverAP
EnergyCutRotamerTrialsMoverCAP
ExtendedPoseMover
ExtendedPoseMoverAP
ExtendedPoseMoverCAP
ExtendedPoseMoverCreator
ExtendedPoseMoverCreatorAP
ExtendedPoseMoverCreatorCAP
FavorSequenceProfile
FavorSequenceProfileAP
FavorSequenceProfileCAP
FavorSequenceProfileCreator
FavorSequenceProfileCreatorAP
FavorSequenceProfileCreatorCAP
FavorSymmetricSequence
FavorSymmetricSequenceAP
FavorSymmetricSequenceCAP
FavorSymmetricSequenceCreator
FavorSymmetricSequenceCreatorAP
FavorSymmetricSequenceCreatorCAP
FindConsensusSequence
FindConsensusSequenceAP
FindConsensusSequenceCAP
FindConsensusSequenceCreator
FindConsensusSequenceCreatorAP
FindConsensusSequenceCreatorCAP
ForceDisulfidesMover
ForceDisulfidesMoverAP
ForceDisulfidesMoverCAP
ForceDisulfidesMoverCreator
ForceDisulfidesMoverCreatorAP
ForceDisulfidesMoverCreatorCAP
FragmentCost
FragmentCostAP
FragmentCostCAP
FragmentMover
FragmentMoverAP
FragmentMoverCAP
GenericMonteCarloMover
GenericMonteCarloMoverAP
GenericMonteCarloMoverCAP
GenericMonteCarloMoverCreator
GenericMonteCarloMoverCreatorAP
GenericMonteCarloMoverCreatorCAP
GreenPacker
GreenPackerAP
GreenPackerCAP
GroupDiscriminator
GroupDiscriminatorAP
GroupDiscriminatorCAP
GunnCost
GunnCostAP
GunnCostCAP
GunnTuple
GunnTupleAP
GunnTupleCAP
IonizableResidue
IonizableResidueAP
IonizableResidueCAP
LoadPDBMover
LoadPDBMoverAP
LoadPDBMoverCAP
LoadPDBMoverCreator
LoadPDBMoverCreatorAP
LoadPDBMoverCreatorCAP
LoadUnboundRotMover
LoadUnboundRotMoverAP
LoadUnboundRotMoverCAP
LoadUnboundRotMoverCreator
LoadUnboundRotMoverCreatorAP
LoadUnboundRotMoverCreatorCAP
LoggedFragmentMover
LoggedFragmentMoverAP
LoggedFragmentMoverCAP
MSDMover
MSDMoverAP
MSDMoverCAP
MSDMoverCreator
MSDMoverCreatorAP
MSDMoverCreatorCAP
MakePolyXMover
MakePolyXMoverAP
MakePolyXMoverCAP
MakePolyXMoverCreator
MakePolyXMoverCreatorAP
MakePolyXMoverCreatorCAP
MembraneTopology
MembraneTopologyAP
MembraneTopologyCAP
MembraneTopologyCreator
MembraneTopologyCreatorAP
MembraneTopologyCreatorCAP
MinMover
MinMoverAP
MinMoverCAP
MinMoverCreator
MinMoverCreatorAP
MinMoverCreatorCAP
MinPackMover
MinPackMoverAP
MinPackMoverCAP
MinPackMoverCreator
MinPackMoverCreatorAP
MinPackMoverCreatorCAP
MinimalRotamer
MinimalRotamerAP
MinimalRotamerCAP
MissingDensityToJumpMover
MissingDensityToJumpMoverAP
MissingDensityToJumpMoverCAP
ModifyVariantTypeMover
ModifyVariantTypeMoverAP
ModifyVariantTypeMoverCAP
ModifyVariantTypeMoverCreator
ModifyVariantTypeMoverCreatorAP
ModifyVariantTypeMoverCreatorCAP
MonteCarloRecover
MonteCarloRecoverAP
MonteCarloRecoverCAP
MonteCarloRecoverCreator
MonteCarloRecoverCreatorAP
MonteCarloRecoverCreatorCAP
MonteCarloReset
MonteCarloResetAP
MonteCarloResetCAP
MonteCarloResetCreator
MonteCarloResetCreatorAP
MonteCarloResetCreatorCAP
MonteCarloTest
MonteCarloTestAP
MonteCarloTestCAP
MonteCarloTestCreator
MonteCarloTestCreatorAP
MonteCarloTestCreatorCAP
MutateResidue
MutateResidueAP
MutateResidueCAP
MutateResidueCreator
MutateResidueCreatorAP
MutateResidueCreatorCAP
O2M_MutateMover
O2M_MutateMoverAP
O2M_MutateMoverCAP
PDBReloadMover
PDBReloadMoverAP
PDBReloadMoverCAP
PDBReloadMoverCreator
PDBReloadMoverCreatorAP
PDBReloadMoverCreatorCAP
PSSM2BfactorMover
PSSM2BfactorMoverAP
PSSM2BfactorMoverCAP
PSSM2BfactorMoverCreator
PSSM2BfactorMoverCreatorAP
PSSM2BfactorMoverCreatorCAP
PackRotamersMover
PackRotamersMoverAP
PackRotamersMoverCAP
PackRotamersMoverCreator
PackRotamersMoverCreatorAP
PackRotamersMoverCreatorCAP
PackRotamersMoverLazy
PackRotamersMoverLazyAP
PackRotamersMoverLazyCAP
PackRotamersMoverLazyCreator
PackRotamersMoverLazyCreatorAP
PackRotamersMoverLazyCreatorCAP
PeptideStapleMover
PeptideStapleMoverAP
PeptideStapleMoverCAP
PeriodicBoxMover
PeriodicBoxMoverAP
PeriodicBoxMoverCAP
PeriodicBoxMoverCreator
PeriodicBoxMoverCreatorAP
PeriodicBoxMoverCreatorCAP
ProlineFixMover
ProlineFixMoverAP
ProlineFixMoverCAP
RandomOmegaFlipMover
RandomOmegaFlipMoverAP
RandomOmegaFlipMoverCAP
RandomOmegaFlipMoverCreator
RandomOmegaFlipMoverCreatorAP
RandomOmegaFlipMoverCreatorCAP
RandomTorsionMover
RandomTorsionMoverAP
RandomTorsionMoverCAP
RandomTorsionMoverCreator
RandomTorsionMoverCreatorAP
RandomTorsionMoverCreatorCAP
RepackSidechainsMover
RepackSidechainsMoverAP
RepackSidechainsMoverCAP
RepackSidechainsMoverCreator
RepackSidechainsMoverCreatorAP
RepackSidechainsMoverCreatorCAP
RepeatPropagationMover
RepeatPropagationMoverAP
RepeatPropagationMoverCAP
RepeatPropagationMoverCreator
RepeatPropagationMoverCreatorAP
RepeatPropagationMoverCreatorCAP
ReportEffectivePKA
ReportEffectivePKAAP
ReportEffectivePKACAP
ReportEffectivePKACreator
ReportEffectivePKACreatorAP
ReportEffectivePKACreatorCAP
RepulsiveOnlyMover
RepulsiveOnlyMoverAP
RepulsiveOnlyMoverCAP
ResTypeFragmentMover
ResTypeFragmentMoverAP
ResTypeFragmentMoverCAP
ResetBaselineMover
ResetBaselineMoverAP
ResetBaselineMoverCAP
ResetBaselineMoverCreator
ResetBaselineMoverCreatorAP
ResetBaselineMoverCreatorCAP
ResidueTypeConstraintMover
ResidueTypeConstraintMoverAP
ResidueTypeConstraintMoverCAP
ResidueTypeConstraintMoverCreator
ResidueTypeConstraintMoverCreatorAP
ResidueTypeConstraintMoverCreatorCAP
ReturnSidechainMover
ReturnSidechainMoverAP
ReturnSidechainMoverCAP
RingConformationMover
RingConformationMoverAP
RingConformationMoverCAP
RingConformationMoverCreator
RingConformationMoverCreatorAP
RingConformationMoverCreatorCAP
RotamerTrialsMinMover
RotamerTrialsMinMoverAP
RotamerTrialsMinMoverCAP
RotamerTrialsMinMoverCreator
RotamerTrialsMinMoverCreatorAP
RotamerTrialsMinMoverCreatorCAP
RotamerTrialsMover
RotamerTrialsMoverAP
RotamerTrialsMoverCAP
RotamerTrialsMoverCreator
RotamerTrialsMoverCreatorAP
RotamerTrialsMoverCreatorCAP
RotamerizeMover
RotamerizeMoverAP
RotamerizeMoverCAP
SaneMinMover
SaneMinMoverAP
SaneMinMoverCAP
SaneMinMoverCreator
SaneMinMoverCreatorAP
SaneMinMoverCreatorCAP
ScoreMover
ScoreMoverAP
ScoreMoverCAP
ScoreMoverCreator
ScoreMoverCreatorAP
ScoreMoverCreatorCAP
SequenceProfileMover
SequenceProfileMoverAP
SequenceProfileMoverCAP
SequenceProfileMoverCreator
SequenceProfileMoverCreatorAP
SequenceProfileMoverCreatorCAP
SetReturningPackRotamersMover
SetReturningPackRotamersMoverAP
SetReturningPackRotamersMoverCAP
SetTorsion
SetTorsionAP
SetTorsionCAP
SetTorsionCreator
SetTorsionCreatorAP
SetTorsionCreatorCAP
ShakeStructureMover
ShakeStructureMoverAP
ShakeStructureMoverCAP
ShearMover
ShearMoverAP
ShearMoverCAP
ShearMoverCreator
ShearMoverCreatorAP
ShearMoverCreatorCAP
ShortBackrubMover
ShortBackrubMoverAP
ShortBackrubMoverCAP
ShortBackrubMoverCreator
ShortBackrubMoverCreatorAP
ShortBackrubMoverCreatorCAP
SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase_T_core_chemical_ChemicalManager_TAP
SingletonBase_T_core_chemical_ChemicalManager_TCAP
SmallMover
SmallMoverAP
SmallMoverCAP
SmallMoverCreator
SmallMoverCreatorAP
SmallMoverCreatorCAP
SmoothFragmentMover
SmoothFragmentMoverAP
SmoothFragmentMoverCAP
SuperimposeMover
SuperimposeMoverAP
SuperimposeMoverCAP
SuperimposeMoverCreator
SuperimposeMoverCreatorAP
SuperimposeMoverCreatorCAP
SwitchChainOrderMover
SwitchChainOrderMoverAP
SwitchChainOrderMoverCAP
SwitchChainOrderMoverCreator
SwitchChainOrderMoverCreatorAP
SwitchChainOrderMoverCreatorCAP
SwitchResidueTypeSetMover
SwitchResidueTypeSetMoverAP
SwitchResidueTypeSetMoverCAP
SwitchResidueTypeSetMoverCreator
SwitchResidueTypeSetMoverCreatorAP
SwitchResidueTypeSetMoverCreatorCAP
TailsScoreMover
TailsScoreMoverAP
TailsScoreMoverCAP
TaskAwareMinMover
TaskAwareMinMoverAP
TaskAwareMinMoverCAP
TaskAwareMinMoverCreator
TaskAwareMinMoverCreatorAP
TaskAwareMinMoverCreatorCAP
ThermodynamicData
ThermodynamicDataAP
ThermodynamicDataCAP
TorsionDOFMover
TorsionDOFMoverAP
TorsionDOFMoverCAP
TorsionSetMover
TorsionSetMoverAP
TorsionSetMoverCAP
Tumble
TumbleAP
TumbleCAP
TumbleCreator
TumbleCreatorAP
TumbleCreatorCAP
UniformRotationMover
UniformRotationMoverAP
UniformRotationMoverCAP
UniformTranslationMover
UniformTranslationMoverAP
UniformTranslationMoverCAP
UserDefinedGroupDiscriminator
UserDefinedGroupDiscriminatorAP
UserDefinedGroupDiscriminatorCAP
VallLookbackFragMover
VallLookbackFragMoverAP
VallLookbackFragMoverCAP
VirtualRootMover
VirtualRootMoverAP
VirtualRootMoverCAP
VirtualRootMoverCreator
VirtualRootMoverCreatorAP
VirtualRootMoverCreatorCAP
WobbleMover
WobbleMoverAP
WobbleMoverCAP
__CPP_AddCavitiesMover__
__CPP_AddChainMoverCreator__
__CPP_AddChainMover__
__CPP_AddConstraintsToCurrentConformationMoverCreator__
__CPP_AddConstraintsToCurrentConformationMover__
__CPP_AddJobPairDataCreator__
__CPP_AddJobPairData__
__CPP_AlignChainMoverCreator__
__CPP_AlignChainMover__
__CPP_BBConRotMover__
__CPP_BBG8T3AMover__
__CPP_BBGaussianMoverCreator__
__CPP_BBGaussianMover__
__CPP_BackboneMover__
__CPP_BoltzmannRotamerMoverCreator__
__CPP_BoltzmannRotamerMover__
__CPP_ChainGroupDiscriminator__
__CPP_ChainSplitMover__
__CPP_ChangeAndResetFoldTreeMoverCreator__
__CPP_ChangeAndResetFoldTreeMover__
__CPP_ClearConstraintsMoverCreator__
__CPP_ClearConstraintsMover__
__CPP_CombinePoseMover__
__CPP_ConsensusDesignMoverCreator__
__CPP_ConsensusDesignMover__
__CPP_ConstrainToIdealMover__
__CPP_ConstraintSetMoverCreator__
__CPP_ConstraintSetMover__
__CPP_ContingentAcceptMoverCreator__
__CPP_ContingentAcceptMover__
__CPP_CopyDofMover__
__CPP_CoupledMoverCreator__
__CPP_CoupledMover__
__CPP_CutChainMoverCreator__
__CPP_CutChainMover__
__CPP_CyclizationMover__
__CPP_DME_FilterMover__
__CPP_DeleteChainsMoverCreator__
__CPP_DeleteChainsMover__
__CPP_DesignRepackMover__
__CPP_DisulfideInsertionMoverCreator__
__CPP_DisulfideInsertionMover__
__CPP_DumpPdbCreator__
__CPP_DumpPdb__
__CPP_EnergyCutRotamerTrialsMinMover__
__CPP_EnergyCutRotamerTrialsMover__
__CPP_ExtendedPoseMoverCreator__
__CPP_ExtendedPoseMover__
__CPP_FavorSequenceProfileCreator__
__CPP_FavorSequenceProfile__
__CPP_FavorSymmetricSequenceCreator__
__CPP_FavorSymmetricSequence__
__CPP_FindConsensusSequenceCreator__
__CPP_FindConsensusSequence__
__CPP_ForceDisulfidesMoverCreator__
__CPP_ForceDisulfidesMover__
__CPP_GenericMonteCarloMoverCreator__
__CPP_GenericMonteCarloMover__
__CPP_GreenPacker__
__CPP_GroupDiscriminator__
__CPP_GunnCost__
__CPP_LoadPDBMoverCreator__
__CPP_LoadPDBMover__
__CPP_LoadUnboundRotMoverCreator__
__CPP_LoadUnboundRotMover__
__CPP_MSDMoverCreator__
__CPP_MSDMover__
__CPP_MakePolyXMoverCreator__
__CPP_MakePolyXMover__
__CPP_MembraneTopologyCreator__
__CPP_MembraneTopology__
__CPP_MinMoverCreator__
__CPP_MinMover__
__CPP_MinPackMoverCreator__
__CPP_MinPackMover__
__CPP_MissingDensityToJumpMover__
__CPP_ModifyVariantTypeMoverCreator__
__CPP_ModifyVariantTypeMover__
__CPP_MonteCarloRecoverCreator__
__CPP_MonteCarloRecover__
__CPP_MonteCarloResetCreator__
__CPP_MonteCarloReset__
__CPP_MonteCarloTestCreator__
__CPP_MonteCarloTest__
__CPP_MutateResidueCreator__
__CPP_MutateResidue__
__CPP_O2M_MutateMover__
__CPP_PDBReloadMoverCreator__
__CPP_PDBReloadMover__
__CPP_PSSM2BfactorMoverCreator__
__CPP_PSSM2BfactorMover__
__CPP_PackRotamersMoverCreator__
__CPP_PackRotamersMoverLazy__
__CPP_PackRotamersMover__
__CPP_PeptideStapleMover__
__CPP_PeriodicBoxMoverCreator__
__CPP_PeriodicBoxMover__
__CPP_ProlineFixMover__
__CPP_RandomOmegaFlipMoverCreator__
__CPP_RandomOmegaFlipMover__
__CPP_RandomTorsionMoverCreator__
__CPP_RandomTorsionMover__
__CPP_RepackSidechainsMoverCreator__
__CPP_RepackSidechainsMover__
__CPP_RepeatPropagationMoverCreator__
__CPP_RepeatPropagationMover__
__CPP_ReportEffectivePKACreator__
__CPP_ReportEffectivePKA__
__CPP_RepulsiveOnlyMover__
__CPP_ResetBaselineMoverCreator__
__CPP_ResetBaselineMover__
__CPP_ResidueTypeConstraintMoverCreator__
__CPP_ResidueTypeConstraintMover__
__CPP_ReturnSidechainMover__
__CPP_RingConformationMoverCreator__
__CPP_RingConformationMover__
__CPP_RotamerTrialsMinMoverCreator__
__CPP_RotamerTrialsMinMover__
__CPP_RotamerTrialsMoverCreator__
__CPP_RotamerTrialsMover__
__CPP_RotamerizeMover__
__CPP_SaneMinMoverCreator__
__CPP_SaneMinMover__
__CPP_ScoreMoverCreator__
__CPP_ScoreMover__
__CPP_SequenceProfileMoverCreator__
__CPP_SequenceProfileMover__
__CPP_SetReturningPackRotamersMover__
__CPP_SetTorsionCreator__
__CPP_SetTorsion__
__CPP_ShakeStructureMover__
__CPP_ShearMoverCreator__
__CPP_ShearMover__
__CPP_ShortBackrubMoverCreator__
__CPP_ShortBackrubMover__
__CPP_SmallMoverCreator__
__CPP_SmallMover__
__CPP_SuperimposeMoverCreator__
__CPP_SuperimposeMover__
__CPP_SwitchChainOrderMoverCreator__
__CPP_SwitchChainOrderMover__
__CPP_SwitchResidueTypeSetMoverCreator__
__CPP_SwitchResidueTypeSetMover__
__CPP_TailsScoreMover__
__CPP_TaskAwareMinMoverCreator__
__CPP_TaskAwareMinMover__
__CPP_TorsionDOFMover__
__CPP_TorsionSetMover__
__CPP_TumbleCreator__
__CPP_Tumble__
__CPP_UniformRotationMover__
__CPP_UniformTranslationMover__
__CPP_UserDefinedGroupDiscriminator__
__CPP_VirtualRootMoverCreator__
__CPP_VirtualRootMover__
__CPP_ddGCreator__
__CPP_ddG__
ddG
ddGAP
ddGCAP
ddGCreator
ddGCreatorAP
ddGCreatorCAP
Functions
setup_vary_polar_hydrogen_geometry
setup_vary_rna_bond_geometry
uniform_dof_distribution
Variables
DCV_ALREADY_CYCLIZED
DCV_CYCLIZABLE
DCV_NOT_CYCLIZABLE
__package__
[
hide private
]