Module _protocols_abinitio_
Classes
AbrelaxApplication
AbrelaxApplicationAP
AbrelaxApplicationCAP
AbrelaxMover
AbrelaxMoverAP
AbrelaxMoverCAP
AllResiduesChanged
AllResiduesChangedAP
AllResiduesChangedCAP
AlternativePairings
AlternativePairingsAP
AlternativePairingsCAP
ClassicAbinitio
ClassicAbinitioAP
ClassicAbinitioCAP
ConstraintFragmentSampler
ConstraintFragmentSamplerAP
ConstraintFragmentSamplerCAP
CoordinateConstraintKC
CoordinateConstraintKCAP
CoordinateConstraintKCCAP
DomainAssembly
DomainAssemblyAP
DomainAssemblyCAP
DomainAssemblyCreator
DomainAssemblyCreatorAP
DomainAssemblyCreatorCAP
DoubleLayerKinematicAbinitio
DoubleLayerKinematicAbinitioAP
DoubleLayerKinematicAbinitioCAP
FixTemplateJumpSetup
FixTemplateJumpSetupAP
FixTemplateJumpSetupCAP
FoldConstraints
FoldConstraintsAP
FoldConstraintsCAP
FragmentSampler
FragmentSamplerAP
FragmentSamplerCAP
HedgeArchive
HedgeArchiveAP
HedgeArchiveCAP
IterativeAbrelax
IterativeAbrelaxAP
IterativeAbrelaxCAP
IterativeBase
IterativeBaseAP
IterativeBaseCAP
IterativeCentroid
IterativeCentroidAP
IterativeCentroidCAP
IterativeFullatom
IterativeFullatomAP
IterativeFullatomCAP
JumpingFoldConstraintsWrapper
JumpingFoldConstraintsWrapperAP
JumpingFoldConstraintsWrapperCAP
KinematicAbinitio
KinematicAbinitioAP
KinematicAbinitioCAP
KinematicControl
KinematicControlAP
KinematicControlCAP
KinematicTaskControl
KinematicTaskControlAP
KinematicTaskControlCAP
LoopJumpFoldCst
LoopJumpFoldCstAP
LoopJumpFoldCstCAP
MembraneAbinitio
MembraneAbinitioAP
MembraneAbinitioCAP
PairingStatEntry
PairingStatEntryAP
PairingStatEntryCAP
PairingStatistics
PairingStatisticsAP
PairingStatisticsCAP
Protocol
ProtocolAP
ProtocolCAP
ResolutionSwitcher
ResolutionSwitcherAP
ResolutionSwitcherCAP
SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase_T_core_chemical_ChemicalManager_TAP
SingletonBase_T_core_chemical_ChemicalManager_TCAP
SingletonBase_T_protocols_jumping_StandardPairingLibrary_T
SingletonBase_T_protocols_jumping_StandardPairingLibrary_TAP
SingletonBase_T_protocols_jumping_StandardPairingLibrary_TCAP
StageID
StrandConstraints
StrandConstraintsAP
StrandConstraintsCAP
Template
TemplateAP
TemplateCAP
TemplateJumpSetup
TemplateJumpSetupAP
TemplateJumpSetupCAP
Templates
TemplatesAP
TemplatesCAP
_HashEntry
_HashEntryAP
_HashEntryCAP
_MergableEntries
_MergableEntriesAP
_MergableEntriesCAP
__CPP_AbrelaxMover__
__CPP_AllResiduesChanged__
__CPP_ClassicAbinitio__
__CPP_ConstraintFragmentSampler__
__CPP_CoordinateConstraintKC__
__CPP_DomainAssemblyCreator__
__CPP_DomainAssembly__
__CPP_DoubleLayerKinematicAbinitio__
__CPP_FixTemplateJumpSetup__
__CPP_FoldConstraints__
__CPP_FragmentSampler__
__CPP_HedgeArchive__
__CPP_IterativeAbrelax__
__CPP_IterativeBase__
__CPP_IterativeCentroid__
__CPP_IterativeFullatom__
__CPP_JumpingFoldConstraintsWrapper__
__CPP_KinematicAbinitio__
__CPP_KinematicControl__
__CPP_KinematicTaskControl__
__CPP_LoopJumpFoldCst__
__CPP_MembraneAbinitio__
__CPP_Protocol__
__CPP_ResolutionSwitcher__
__CPP_TemplateJumpSetup__
Functions
Broker_main
create_ClassicFragmentMover
hash_value
register_options_broker
run_boinc_debug
Variables
ALL_STAGES
END_ABINITIO
LAST_STAGE
LOOP_CLOSURE
RELAX
STAGE_1
STAGE_2
STAGE_3
STAGE_3a
STAGE_3b
STAGE_4
SWITCH_TO_FULLATOM
__package__
[
hide private
]