Module _protocols_features_

Classes

AtomAtomPairFeatures

AtomAtomPairFeaturesAP

AtomAtomPairFeaturesCAP

AtomAtomPairFeaturesCreator

AtomAtomPairFeaturesCreatorAP

AtomAtomPairFeaturesCreatorCAP

AtomInResidueAtomInResiduePairFeatures

AtomInResidueAtomInResiduePairFeaturesAP

AtomInResidueAtomInResiduePairFeaturesCAP

AtomInResidueAtomInResiduePairFeaturesCreator

AtomInResidueAtomInResiduePairFeaturesCreatorAP

AtomInResidueAtomInResiduePairFeaturesCreatorCAP

AtomTypesFeatures

AtomTypesFeaturesAP

AtomTypesFeaturesCAP

AtomTypesFeaturesCreator

AtomTypesFeaturesCreatorAP

AtomTypesFeaturesCreatorCAP

BatchFeaturesAP

BatchFeaturesCAP

BetaTurnDetection

BetaTurnDetectionAP

BetaTurnDetectionCAP

BetaTurnDetectionFeatures

BetaTurnDetectionFeaturesAP

BetaTurnDetectionFeaturesCAP

BetaTurnDetectionFeaturesCreator

BetaTurnDetectionFeaturesCreatorAP

BetaTurnDetectionFeaturesCreatorCAP

ChargeChargeFeatures

ChargeChargeFeaturesAP

ChargeChargeFeaturesCAP

ChargeChargeFeaturesCreator

ChargeChargeFeaturesCreatorAP

ChargeChargeFeaturesCreatorCAP

DatabaseFilterAP

DatabaseFilterCAP

DatabaseJobInputter

DatabaseJobInputterAP

DatabaseJobInputterCAP

DatabaseJobInputterCreator

DatabaseJobInputterCreatorAP

DatabaseJobInputterCreatorCAP

DatabaseJobOutputter

DatabaseJobOutputterAP

DatabaseJobOutputterCAP

DatabaseJobOutputterCreator

DatabaseJobOutputterCreatorAP

DatabaseJobOutputterCreatorCAP

DdGFeaturesCreator

DdGFeaturesCreatorAP

DdGFeaturesCreatorCAP

FeaturesReporter

FeaturesReporterAP

FeaturesReporterCAP

FeaturesReporterCreator

FeaturesReporterCreatorAP

FeaturesReporterCreatorCAP

FeaturesReporterFactory

FeaturesReporterFactoryAP

FeaturesReporterFactoryCAP

GeometricSolvationFeatures

GeometricSolvationFeaturesAP

GeometricSolvationFeaturesCAP

GeometricSolvationFeaturesCreator

GeometricSolvationFeaturesCreatorAP

GeometricSolvationFeaturesCreatorCAP

HBondFeaturesAP

HBondFeaturesCAP

HBondFeaturesCreator

HBondFeaturesCreatorAP

HBondFeaturesCreatorCAP

HBondParameterFeatures

HBondParameterFeaturesAP

HBondParameterFeaturesCAP

HBondParameterFeaturesCreator

HBondParameterFeaturesCreatorAP

HBondParameterFeaturesCreatorCAP

HelixCapFeatures

HelixCapFeaturesAP

HelixCapFeaturesCAP

HelixCapFeaturesCreator

HelixCapFeaturesCreatorAP

HelixCapFeaturesCreatorCAP

InterfaceFeatures

InterfaceFeaturesAP

InterfaceFeaturesCAP

InterfaceFeaturesCreator

InterfaceFeaturesCreatorAP

InterfaceFeaturesCreatorCAP

JobDataFeatures

JobDataFeaturesAP

JobDataFeaturesCAP

JobDataFeaturesCreator

JobDataFeaturesCreatorAP

JobDataFeaturesCreatorCAP

LoopAnchorFeatures

LoopAnchorFeaturesAP

LoopAnchorFeaturesCAP

LoopAnchorFeaturesCreator

LoopAnchorFeaturesCreatorAP

LoopAnchorFeaturesCreatorCAP

OrbitalsFeatures

OrbitalsFeaturesAP

OrbitalsFeaturesCAP

OrbitalsFeaturesCreator

OrbitalsFeaturesCreatorAP

OrbitalsFeaturesCreatorCAP

PairFeaturesCAP

PairFeaturesCreator

PairFeaturesCreatorAP

PairFeaturesCreatorCAP

PdbDataFeatures

PdbDataFeaturesAP

PdbDataFeaturesCAP

PdbDataFeaturesCreator

PdbDataFeaturesCreatorAP

PdbDataFeaturesCreatorCAP

PoseCommentsFeatures

PoseCommentsFeaturesAP

PoseCommentsFeaturesCAP

PoseCommentsFeaturesCreator

PoseCommentsFeaturesCreatorAP

PoseCommentsFeaturesCreatorCAP

PoseConformationFeatures

PoseConformationFeaturesAP

PoseConformationFeaturesCAP

PoseConformationFeaturesCreator

PoseConformationFeaturesCreatorAP

PoseConformationFeaturesCreatorCAP

ProteinBackboneAtomAtomPairFeatures

ProteinBackboneAtomAtomPairFeaturesAP

ProteinBackboneAtomAtomPairFeaturesCAP

ProteinBackboneAtomAtomPairFeaturesCreator

ProteinBackboneAtomAtomPairFeaturesCreatorAP

ProteinBackboneAtomAtomPairFeaturesCreatorCAP

ProteinBackboneTorsionAngleFeatures

ProteinBackboneTorsionAngleFeaturesAP

ProteinBackboneTorsionAngleFeaturesCAP

ProteinBackboneTorsionAngleFeaturesCreator

ProteinBackboneTorsionAngleFeaturesCreatorAP

ProteinBackboneTorsionAngleFeaturesCreatorCAP

ProteinBondGeometryFeatures

ProteinBondGeometryFeaturesAP

ProteinBondGeometryFeaturesCAP

ProteinBondGeometryFeaturesCreator

ProteinBondGeometryFeaturesCreatorAP

ProteinBondGeometryFeaturesCreatorCAP

ProteinRMSDFeatures

ProteinRMSDFeaturesAP

ProteinRMSDFeaturesCAP

ProteinRMSDFeaturesCreator

ProteinRMSDFeaturesCreatorAP

ProteinRMSDFeaturesCreatorCAP

ProteinRMSDNoSuperpositionFeatures

ProteinRMSDNoSuperpositionFeaturesAP

ProteinRMSDNoSuperpositionFeaturesCAP

ProteinRMSDNoSuperpositionFeaturesCreator

ProteinRMSDNoSuperpositionFeaturesCreatorAP

ProteinRMSDNoSuperpositionFeaturesCreatorCAP

ProteinResidueConformationFeatures

ProteinResidueConformationFeaturesAP

ProteinResidueConformationFeaturesCAP

ProteinResidueConformationFeaturesCreator

ProteinResidueConformationFeaturesCreatorAP

ProteinResidueConformationFeaturesCreatorCAP

ProteinSilentReport

ProteinSilentReportAP

ProteinSilentReportCAP

ProtocolFeatures

ProtocolFeaturesAP

ProtocolFeaturesCAP

RadiusOfGyrationFeatures

RadiusOfGyrationFeaturesAP

RadiusOfGyrationFeaturesCAP

RadiusOfGyrationFeaturesCreator

RadiusOfGyrationFeaturesCreatorAP

RadiusOfGyrationFeaturesCreatorCAP

RamachandranHash

Report

ReportAP

ReportToDBCreator

ReportToDBCreatorAP

ReportToDBCreatorCAP

ResidueBurialFeatures

ResidueBurialFeaturesAP

ResidueBurialFeaturesCAP

ResidueBurialFeaturesCreator

ResidueBurialFeaturesCreatorAP

ResidueBurialFeaturesCreatorCAP

ResidueConformationFeatures

ResidueConformationFeaturesAP

ResidueConformationFeaturesCAP

ResidueConformationFeaturesCreator

ResidueConformationFeaturesCreatorAP

ResidueConformationFeaturesCreatorCAP

ResidueFeatures

ResidueFeaturesAP

ResidueFeaturesCAP

ResidueFeaturesCreator

ResidueFeaturesCreatorAP

ResidueFeaturesCreatorCAP

ResidueGridScoresFeatures

ResidueGridScoresFeaturesAP

ResidueGridScoresFeaturesCAP

ResidueGridScoresFeaturesCreator

ResidueGridScoresFeaturesCreatorAP

ResidueGridScoresFeaturesCreatorCAP

ResidueScoresFeatures

ResidueScoresFeaturesAP

ResidueScoresFeaturesCAP

ResidueScoresFeaturesCreator

ResidueScoresFeaturesCreatorAP

ResidueScoresFeaturesCreatorCAP

ResidueSecondaryStructureFeatures

ResidueSecondaryStructureFeaturesAP

ResidueSecondaryStructureFeaturesCAP

ResidueSecondaryStructureFeaturesCreator

ResidueSecondaryStructureFeaturesCreatorAP

ResidueSecondaryStructureFeaturesCreatorCAP

ResidueTotalScoresFeatures

ResidueTotalScoresFeaturesAP

ResidueTotalScoresFeaturesCAP

ResidueTotalScoresFeaturesCreator

ResidueTotalScoresFeaturesCreatorAP

ResidueTotalScoresFeaturesCreatorCAP

ResidueTypesFeatures

ResidueTypesFeaturesAP

ResidueTypesFeaturesCAP

ResidueTypesFeaturesCreator

ResidueTypesFeaturesCreatorAP

ResidueTypesFeaturesCreatorCAP

RotamerBoltzmannWeightFeatures

RotamerBoltzmannWeightFeaturesAP

RotamerBoltzmannWeightFeaturesCAP

RotamerBoltzmannWeightFeaturesCreator

RotamerBoltzmannWeightFeaturesCreatorAP

RotamerBoltzmannWeightFeaturesCreatorCAP

RotamerFeatures

RotamerFeaturesAP

RotamerFeaturesCAP

RotamerFeaturesCreator

RotamerFeaturesCreatorAP

RotamerFeaturesCreatorCAP

RotamerRecoveryFeatures

RotamerRecoveryFeaturesAP

RotamerRecoveryFeaturesCAP

RotamerRecoveryFeaturesCreator

RotamerRecoveryFeaturesCreatorAP

RotamerRecoveryFeaturesCreatorCAP

RuntimeFeatures

RuntimeFeaturesAP

RuntimeFeaturesCAP

RuntimeFeaturesCreator

RuntimeFeaturesCreatorAP

RuntimeFeaturesCreatorCAP

SaltBridgeFeatures

SaltBridgeFeaturesAP

SaltBridgeFeaturesCAP

SaltBridgeFeaturesCreator

SaltBridgeFeaturesCreatorAP

SaltBridgeFeaturesCreatorCAP

ScoreFunctionFeatures

ScoreFunctionFeaturesAP

ScoreFunctionFeaturesCAP

ScoreFunctionFeaturesCreator

ScoreFunctionFeaturesCreatorAP

ScoreFunctionFeaturesCreatorCAP

ScoreTypeFeatures

ScoreTypeFeaturesAP

ScoreTypeFeaturesCAP

ScoreTypeFeaturesCreator

ScoreTypeFeaturesCreatorAP

ScoreTypeFeaturesCreatorCAP

ScreeningFeatures

ScreeningFeaturesAP

ScreeningFeaturesCAP

ScreeningFeaturesCreator

ScreeningFeaturesCreatorAP

ScreeningFeaturesCreatorCAP

SecondaryStructureSegment

SecondaryStructureSegmentAP

SecondaryStructureSegmentCAP

SecondaryStructureSegmentFeatures

SecondaryStructureSegmentFeaturesAP

SecondaryStructureSegmentFeaturesCAP

SecondaryStructureSegmentFeaturesCreator

SecondaryStructureSegmentFeaturesCreatorAP

SecondaryStructureSegmentFeaturesCreatorCAP

SingletonBase_T_core_chemical_ChemicalManager_T

SingletonBase_T_core_chemical_ChemicalManager_TAP

SingletonBase_T_core_chemical_ChemicalManager_TCAP

SingletonBase_T_core_pack_dunbrack_RotamerLibrary_T

SingletonBase_T_core_pack_dunbrack_RotamerLibrary_TAP

SingletonBase_T_core_pack_dunbrack_RotamerLibrary_TCAP

SingletonBase_T_core_scoring_geometric_solvation_GridInfo_T

SingletonBase_T_core_scoring_geometric_solvation_GridInfo_TAP

SingletonBase_T_core_scoring_geometric_solvation_GridInfo_TCAP

SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_T

SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_TAP

SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_TCAP

SmotifFeaturesAP

SmotifFeaturesCAP

SmotifFeaturesCreator

SmotifFeaturesCreatorAP

SmotifFeaturesCreatorCAP

StructureFeatures

StructureFeaturesAP

StructureFeaturesCAP

StructureFeaturesCreator

StructureFeaturesCreatorAP

StructureFeaturesCreatorCAP

StructureScoresFeatures

StructureScoresFeaturesAP

StructureScoresFeaturesCAP

StructureScoresFeaturesCreator

StructureScoresFeaturesCreatorAP

StructureScoresFeaturesCreatorCAP

TaskOperationFeatures

TaskOperationFeaturesAP

TaskOperationFeaturesCAP

TaskOperationFeaturesCreator

TaskOperationFeaturesCreatorAP

TaskOperationFeaturesCreatorCAP

TopCountOfAllInputs

TopCountOfAllInputsAP

TopCountOfAllInputsCAP

TopCountOfEachInput

TopCountOfEachInputAP

TopCountOfEachInputCAP

TopPercentOfAllInputs

TopPercentOfAllInputsAP

TopPercentOfAllInputsCAP

TopPercentOfEachInput

TopPercentOfEachInputAP

TopPercentOfEachInputCAP

TotalScoreFeatures

TotalScoreFeaturesAP

TotalScoreFeaturesCAP

TotalScoreFeaturesCreator

TotalScoreFeaturesCreatorAP

TotalScoreFeaturesCreatorCAP

TrajectoryMapFeatures

TrajectoryMapFeaturesAP

TrajectoryMapFeaturesCAP

TrajectoryMapFeaturesCreator

TrajectoryMapFeaturesCreatorAP

TrajectoryMapFeaturesCreatorCAP

TrajectoryReportToDB

TrajectoryReportToDBAP

TrajectoryReportToDBCAP

TrajectoryReportToDBCreator

TrajectoryReportToDBCreatorAP

TrajectoryReportToDBCreatorCAP

UnrecognizedAtomFeatures

UnrecognizedAtomFeaturesAP

UnrecognizedAtomFeaturesCAP

UnrecognizedAtomFeaturesCreator

UnrecognizedAtomFeaturesCreatorAP

UnrecognizedAtomFeaturesCreatorCAP

WaterFeaturesAP

WaterFeaturesCAP

WaterFeaturesCreator

WaterFeaturesCreatorAP

WaterFeaturesCreatorCAP

__CPP_AtomAtomPairFeaturesCreator__

__CPP_AtomAtomPairFeatures__

__CPP_AtomInResidueAtomInResiduePairFeaturesCreator__

__CPP_AtomInResidueAtomInResiduePairFeatures__

__CPP_AtomTypesFeaturesCreator__

__CPP_AtomTypesFeatures__

__CPP_BatchFeatures__

__CPP_BetaTurnDetectionFeaturesCreator__

__CPP_BetaTurnDetectionFeatures__

__CPP_BetaTurnDetection__

__CPP_ChargeChargeFeaturesCreator__

__CPP_ChargeChargeFeatures__

__CPP_DatabaseFilter__

__CPP_DatabaseJobInputterCreator__

__CPP_DatabaseJobInputter__

__CPP_DatabaseJobOutputterCreator__

__CPP_DatabaseJobOutputter__

__CPP_DdGFeaturesCreator__

__CPP_DdGFeatures__

__CPP_FeaturesReporterCreator__

__CPP_FeaturesReporter__

__CPP_GeometricSolvationFeaturesCreator__

__CPP_GeometricSolvationFeatures__

__CPP_HBondFeaturesCreator__

__CPP_HBondFeatures__

__CPP_HBondParameterFeaturesCreator__

__CPP_HBondParameterFeatures__

__CPP_HelixCapFeaturesCreator__

__CPP_HelixCapFeatures__

__CPP_InterfaceFeaturesCreator__

__CPP_InterfaceFeatures__

__CPP_JobDataFeaturesCreator__

__CPP_JobDataFeatures__

__CPP_LoopAnchorFeaturesCreator__

__CPP_LoopAnchorFeatures__

__CPP_OrbitalsFeaturesCreator__

__CPP_OrbitalsFeatures__

__CPP_PairFeaturesCreator__

__CPP_PairFeatures__

__CPP_PdbDataFeaturesCreator__

__CPP_PdbDataFeatures__

__CPP_PoseCommentsFeaturesCreator__

__CPP_PoseCommentsFeatures__

__CPP_PoseConformationFeaturesCreator__

__CPP_PoseConformationFeatures__

__CPP_ProteinBackboneAtomAtomPairFeaturesCreator__

__CPP_ProteinBackboneAtomAtomPairFeatures__

__CPP_ProteinBackboneTorsionAngleFeaturesCreator__

__CPP_ProteinBackboneTorsionAngleFeatures__

__CPP_ProteinBondGeometryFeaturesCreator__

__CPP_ProteinBondGeometryFeatures__

__CPP_ProteinRMSDFeaturesCreator__

__CPP_ProteinRMSDFeatures__

__CPP_ProteinRMSDNoSuperpositionFeaturesCreator__

__CPP_ProteinRMSDNoSuperpositionFeatures__

__CPP_ProteinResidueConformationFeaturesCreator__

__CPP_ProteinResidueConformationFeatures__

__CPP_ProteinSilentReport__

__CPP_ProtocolFeatures__

__CPP_RadiusOfGyrationFeaturesCreator__

__CPP_RadiusOfGyrationFeatures__

__CPP_ReportToDBCreator__

__CPP_ReportToDB__

__CPP_ResidueBurialFeaturesCreator__

__CPP_ResidueBurialFeatures__

__CPP_ResidueConformationFeaturesCreator__

__CPP_ResidueConformationFeatures__

__CPP_ResidueFeaturesCreator__

__CPP_ResidueFeatures__

__CPP_ResidueGridScoresFeaturesCreator__

__CPP_ResidueGridScoresFeatures__

__CPP_ResidueScoresFeaturesCreator__

__CPP_ResidueScoresFeatures__

__CPP_ResidueSecondaryStructureFeaturesCreator__

__CPP_ResidueSecondaryStructureFeatures__

__CPP_ResidueTotalScoresFeaturesCreator__

__CPP_ResidueTotalScoresFeatures__

__CPP_ResidueTypesFeaturesCreator__

__CPP_ResidueTypesFeatures__

__CPP_RotamerBoltzmannWeightFeaturesCreator__

__CPP_RotamerBoltzmannWeightFeatures__

__CPP_RotamerFeaturesCreator__

__CPP_RotamerFeatures__

__CPP_RotamerRecoveryFeaturesCreator__

__CPP_RotamerRecoveryFeatures__

__CPP_RuntimeFeaturesCreator__

__CPP_RuntimeFeatures__

__CPP_SaltBridgeFeaturesCreator__

__CPP_SaltBridgeFeatures__

__CPP_ScoreFunctionFeaturesCreator__

__CPP_ScoreFunctionFeatures__

__CPP_ScoreTypeFeaturesCreator__

__CPP_ScoreTypeFeatures__

__CPP_ScreeningFeaturesCreator__

__CPP_ScreeningFeatures__

__CPP_SecondaryStructureSegmentFeaturesCreator__

__CPP_SecondaryStructureSegmentFeatures__

__CPP_SmotifFeaturesCreator__

__CPP_SmotifFeatures__

__CPP_StructureFeaturesCreator__

__CPP_StructureFeatures__

__CPP_StructureScoresFeaturesCreator__

__CPP_StructureScoresFeatures__

__CPP_TaskOperationFeaturesCreator__

__CPP_TaskOperationFeatures__

__CPP_TopCountOfAllInputs__

__CPP_TopCountOfEachInput__

__CPP_TopPercentOfAllInputs__

__CPP_TopPercentOfEachInput__

__CPP_TotalScoreFeaturesCreator__

__CPP_TotalScoreFeatures__

__CPP_TrajectoryMapFeaturesCreator__

__CPP_TrajectoryMapFeatures__

__CPP_TrajectoryReportToDBCreator__

__CPP_TrajectoryReportToDB__

__CPP_UnrecognizedAtomFeaturesCreator__

__CPP_UnrecognizedAtomFeatures__

__CPP_WaterFeaturesCreator__

__CPP_WaterFeatures__

Functions

deserialize_db_listener_data

deserialize_xyz_coords

get_DB_filter_ptr

get_current_structure_count

get_protocol_and_batch_id

get_question_mark_string

get_score_for_struct_id_and_score_term_from_job_data

get_score_for_struct_id_and_score_term_from_score_data

get_score_type_id_from_score_term

get_struct_id_with_highest_score_from_job_data

get_struct_id_with_highest_score_from_score_data

get_struct_id_with_lowest_score_from_job_data

get_struct_id_with_lowest_score_from_score_data

get_struct_id_with_nth_lowest_score_from_job_data

get_struct_id_with_nth_lowest_score_from_score_data

serialize_residue_xyz_coords

set_protocol_and_batch_id

struct_ids_from_tag

write_batch_reports_table

write_features_reporters_table

Variables

A

B

E

L

number_of_ramachandran_hashes