Module _core_conformation_

Classes

AbstractRotamerTrie

AbstractRotamerTrieAP

AbstractRotamerTrieCAP

Atom

AtomAP

AtomCAP

AtomGraphEdgeData

AtomGraphEdgeDataAP

AtomGraphEdgeDataCAP

AtomGraphVertexData

AtomGraphVertexDataAP

AtomGraphVertexDataCAP

ConformationCAP

ConformationKinWriter

ConformationKinWriterAP

ConformationKinWriterCAP

DefaultCubeHash

DefaultCubeHashAP

DefaultCubeHashCAP

ExactResidueMatcher

ExactResidueMatcherAP

ExactResidueMatcherCAP

PointGraphEdgeData

PointGraphEdgeDataAP

PointGraphEdgeDataCAP

PointGraphPyCAP

PointGraphVertexData

PointGraphVertexDataAP

PointGraphVertexDataCAP

PseudoBondCollection

PseudoBondCollectionAP

PseudoBondCollectionCAP

Residue

ResidueFactoryAP

ResidueFactoryCAP

ResidueKinWriter

ResidueKinWriterAP

ResidueKinWriterCAP

ResidueMatcherAP

ResidueMatcherCAP

RotamerSetBaseAP

RotamerSetBaseCAP

SingletonBase_T_core_chemical_ChemicalManager_T

SingletonBase_T_core_chemical_ChemicalManager_TAP

SingletonBase_T_core_chemical_ChemicalManager_TCAP

Strategy

UltraLightResidue

UltraLightResidueAP

UltraLightResidueCAP

UpperEdgeGraph_T_core_conformation_PointGraphVertexData_core_conformation_PointGraphEdgeData_T

UpperEdgeGraph_T_core_conformation_PointGraphVertexData_core_conformation_PointGraphEdgeData_TAP

UpperEdgeGraph_T_core_conformation_PointGraphVertexData_core_conformation_PointGraphEdgeData_TCAP

WatsonCrickResidueMatcher

WatsonCrickResidueMatcherAP

WatsonCrickResidueMatcherCAP

__CPP_Conformation__

__CPP_ExactResidueMatcher__

__CPP_ResidueMatcher__

__CPP_RotamerSetBase__

__CPP_WatsonCrickResidueMatcher__

ppo_torsion_bin

Functions

add_lower_terminus_type_to_conformation_residue

add_upper_terminus_type_to_conformation_residue

add_variant_type_to_conformation_residue

annotated_atom_graph_from_conformation

atom_graph_from_conformation

atom_id_to_named_atom_id

build_chemical_edge

build_jump_edge

build_polymer_edge

build_residue_tree

change_cys_state

char_valid_as_torsion_bin

cis_omega_torsion_bin

copy_residue_coordinates_and_rebuild_missing_atoms

disulfide_bonds

form_disulfide_helper

get_anchor_and_root_atoms

get_anchor_atomno

get_chemical_root_and_anchor_atomnos

get_root_atomno

get_root_residue_root_atomno

get_torsion_bin

idealize_hydrogens

idealize_position

insert_ideal_bonds_at_polymer_junction

insert_ideal_mainchain_bonds

insert_residue_into_atom_tree

is_disulfide_bond

is_ideal_position

map_char_to_torsion_bin

map_string_to_torsion_bin_string

map_torsion_bin_to_char

named_atom_id_to_atom_id

orient_residue_for_ideal_bond

promote_sameresidue_child_of_jump_atom

remap_cis_omega_torsion_bins_to_trans

remove_lower_terminus_type_from_conformation_residue

remove_upper_terminus_type_from_conformation_residue

remove_variant_type_from_conformation_residue

replace_conformation_residue_copying_existing_coordinates

replace_residue_in_atom_tree

residue_point_graph_from_conformation

set_chi_according_to_coordinates

setup_corresponding_atoms

stub_id_to_named_stub_id

write_kinemage_header

Variables

NAIVE

OCTREE

n_ppo_torsion_bins