Module _protocols_farna_
Classes
BasePairStep
BasePairStepAP
BasePairStepCAP
BasePairStepLibrary
BasePairStepLibraryAP
BasePairStepLibraryCAP
BasePairStepSequence
BasePairStepSequenceAP
BasePairStepSequenceCAP
BasePairType
BasePairTypeAP
BasePairTypeCAP
ChunkSet
ChunkSetAP
ChunkSetCAP
FragmentLibrary
FragmentLibraryAP
FragmentLibraryCAP
FullAtomRNA_Fragments
FullAtomRNA_FragmentsAP
FullAtomRNA_FragmentsCAP
MultipleDomainMover
MultipleDomainMoverAP
MultipleDomainMoverCAP
RNA_ChunkLibrary
RNA_ChunkLibraryAP
RNA_ChunkLibraryCAP
RNA_DeNovoProtocol
RNA_DeNovoProtocolAP
RNA_DeNovoProtocolCAP
RNA_FragmentMover
RNA_FragmentMoverAP
RNA_FragmentMoverCAP
RNA_Fragments
RNA_FragmentsAP
RNA_FragmentsCAP
RNA_JumpLibrary
RNA_JumpLibraryAP
RNA_JumpLibraryCAP
RNA_LoopCloser
RNA_LoopCloserAP
RNA_LoopCloserCAP
RNA_Minimizer
RNA_MinimizerAP
RNA_MinimizerCAP
RNA_Pairing
RNA_PairingAP
RNA_PairingCAP
RNA_PairingTemplate
RNA_PairingTemplateAP
RNA_PairingTemplateCAP
RNA_Relaxer
RNA_RelaxerAP
RNA_RelaxerCAP
RNA_SecStructInfo
RNA_SecStructInfoAP
RNA_SecStructInfoCAP
RNA_StructureParameters
RNA_StructureParametersAP
RNA_StructureParametersCAP
TorsionSet
TorsionSetAP
TorsionSetCAP
_RNA_MatchType_
__CPP_FullAtomRNA_Fragments__
__CPP_MultipleDomainMover__
__CPP_RNA_DeNovoProtocol__
__CPP_RNA_FragmentMover__
__CPP_RNA_Fragments__
__CPP_RNA_LoopCloser__
__CPP_RNA_Minimizer__
__CPP_RNA_Relaxer__
__CPP_RNA_SecStructInfo__
Functions
assert_phosphate_nomenclature_matches_mini
check_base_pair
compare_RNA_char
compare_RNA_secstruct
convert_based_on_match_type
create_rna_vall_torsions
ensure_phosphate_nomenclature_matches_mini
export_packer_results
figure_out_base_pair_partner
figure_out_secstruct
get_base_pairing_info
get_base_pairing_list
get_op2_op1_sign
get_rigid_body_jumps
get_rna_secstruct
get_sugar_centroid
involved_in_phosphate_torsion
is_num_in_list
let_rigid_body_jumps_move
make_coarse_pose
make_extended_coarse_pose
make_phosphate_nomenclature_matches_mini
moveable_jump
possible_root
print_hbonds
print_internal_coords
process_input_file
remove_cutpoint_closed
remove_cutpoints_closed
set_output_res_num
set_rna_secstruct
setup_base_pair_constraints
setup_coarse_chainbreak_constraints
translate_virtual_anchor_to_first_rigid_body
virtualize_bulges
Variables
MATCH_ALL
MATCH_EXACT
MATCH_YR
__package__
[
hide private
]