Module _core_pose_
Classes
CrystInfo
CrystInfoAP
CrystInfoCAP
MiniPose
MiniPoseAP
MiniPoseCAP
PDBInfo
PDBInfoAP
PDBInfoCAP
PDBPoseMap
PDBPoseMapAP
PDBPoseMapCAP
Pose
PoseAP
PoseCAP
PoseCoordPickMode
PosePyObserver
Py_basic_datacache_DataCache_CacheableObserver
RemarkInfo
RemarkInfoAP
RemarkInfoCAP
Remarks
RemarksAP
RemarksCAP
SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase_T_core_chemical_ChemicalManager_TAP
SingletonBase_T_core_chemical_ChemicalManager_TCAP
UnrecognizedAtomRecord
UnrecognizedAtomRecordAP
UnrecognizedAtomRecordCAP
xyzStripeHashPose
xyzStripeHashPoseAP
xyzStripeHashPoseCAP
Functions
QQQ_PosePyObserverTesterFunction
addVirtualResAsRoot
add_comment
add_lower_terminus_type_to_pose_residue
add_score_line_string
add_upper_terminus_type_to_pose_residue
add_variant_type_to_pose_residue
add_variant_type_to_residue
annotated_to_oneletter_sequence
append_pose_to_pose
append_subpose_to_pose
atom_id_to_named_atom_id
canonical_atom_count
canonical_residue_count
center_of_mass
clearPoseExtraScore
clearPoseExtraScores
compare_atom_coordinates
compare_binary_protein_silent_struct
conf2pdb_chain
convert_from_std_map
correctly_add_cutpoint_variants
create_subpose
delete_comment
dump_comment_pdb
energy_from_pose
extract_tag_from_pose
getPoseExtraScore
get_all_comments
get_all_score_line_strings
get_center_of_mass
get_chain_from_chain_id
get_chain_from_jump_id
get_chain_id_from_chain
get_chain_id_from_jump_id
get_chain_ids_from_chain
get_chain_ids_from_chains
get_chain_residues
get_comment
get_hash_excluding_chain
get_hash_from_chain
get_jump_id_from_chain
get_jump_id_from_chain_id
get_jump_ids_from_chain
get_jump_ids_from_chain_ids
get_resnum
get_resnum_list
get_resnum_list_ordered
get_score_line_string
get_sequence_len
get_sha1_hash_excluding_chain
hasPoseExtraScore
has_chain
initialize_atomid_map
initialize_atomid_map_AtomID
initialize_disulfide_bonds
is_ideal_pose
is_ideal_position
is_lower_terminus
is_position_conserved_residue
is_upper_terminus
jumps_from_pose
make_atom_map
make_pose_from_saccharide_sequence
make_pose_from_sequence
mass
named_atom_id_to_atom_id
named_stub_id_to_stub_id
noncanonical_atom_count
noncanonical_chi_count
noncanonical_residue_count
nres_protein
num_atoms
num_chi_angles
num_hbond_acceptors
num_hbond_donors
num_heavy_atoms
parse_resnum
parse_sequence
partition_pose_by_jump
pdbslice
pose_from_saccharide_sequence
pose_max_nbr_radius
pose_residue_is_terminal
read_comment_pdb
read_psipred_ss2_file
remove_ligand_canonical_residues
remove_lower_terminus_type_from_pose_residue
remove_nonprotein_residues
remove_upper_terminus_type_from_pose_residue
remove_variant_type_from_pose_residue
remove_variant_type_from_residue
remove_virtual_residues
renumber_pdbinfo_based_on_conf_chains
replace_pose_residue_copying_existing_coordinates
residue_center_of_mass
residue_types_from_saccharide_sequence
residue_types_from_sequence
return_nearest_residue
sequence_map_from_pdbinfo
setPoseExtraScore
set_ss_from_phipsi
setup_dof_mask_from_move_map
setup_dof_to_torsion_map
sort_pose_by_score
stub_id_to_named_stub_id
swap_transform
tag_from_pose
tag_into_pose
total_energy_from_pose
transfer_jumps
transfer_phi_psi
Variables
PoseCoordPickMode_ALL
PoseCoordPickMode_BB
PoseCoordPickMode_BNP
PoseCoordPickMode_CA
PoseCoordPickMode_CB
PoseCoordPickMode_CB_else_CA
PoseCoordPickMode_CBorCA
PoseCoordPickMode_HVY
PoseCoordPickMode_HVY_IF_NP
PoseCoordPickMode_NBR
PoseCoordPickMode_NUL
PoseCoordPickMode_N_CA_C
PoseCoordPickMode_N_CA_C_CB
PoseCoordPickMode_N_C_O
__package__
[
hide private
]