Module _protocols_stepwise_modeler_
Classes
SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase_T_core_chemical_ChemicalManager_TAP
SingletonBase_T_core_chemical_ChemicalManager_TCAP
StepWiseConnectionSampler
StepWiseConnectionSamplerAP
StepWiseConnectionSamplerCAP
StepWiseMinimizer
StepWiseMinimizerAP
StepWiseMinimizerCAP
StepWiseModeler
StepWiseModelerAP
StepWiseModelerCAP
__CPP_StepWiseConnectionSampler__
__CPP_StepWiseMinimizer__
__CPP_StepWiseModeler__
Functions
add_to_pose_list
check_for_input_domain
check_jump_to_next_residue_in_chain
check_jump_to_previous_residue_in_chain
check_scorefxn_has_constraint_terms_if_pose_has_constraints
constraint_set_slice
definite_terminal_root
figure_out_moving_chain_break_res
figure_out_moving_chain_breaks
figure_out_moving_cutpoints_closed
figure_out_moving_cutpoints_closed_from_moving_res
figure_out_moving_partition_res
figure_out_moving_partition_res_for_jump
figure_out_moving_partition_res_for_suite
figure_out_reference_res_for_suite
figure_out_root_and_moving_partition_res
figure_out_root_partition_res
find_downstream_connection_res
find_jump_number_at_suite
fix_protein_jump_atom
fix_up_jump_atoms
fix_up_jump_atoms_and_residue_type_variants
fix_up_residue_type_variants
fix_up_residue_type_variants_at_strand_beginning
fix_up_residue_type_variants_at_strand_end
get_all_residues
get_all_working_moving_res
get_cutpoint_closed
get_domain_boundary_res
get_domain_boundary_suites
get_file_name
get_minimize_scorefxn
get_moving_res_including_domain_boundaries
get_partition_definition
get_partition_definition_by_jump
get_unique_connection_res
initialize_o2prime_pack_scorefxn
initialize_pack_scorefxn
initialize_sample_scorefxn
is_cutpoint_closed
is_protein
look_for_unique_jump_to_moving_res
make_cut_at_moving_suite
make_variants_match
map_constraints_from_original_pose
merge_in_other_pose
merge_in_other_pose_by_bond
merge_in_other_pose_by_jump
merge_two_poses
merge_two_poses_using_full_model_info
merge_vectors
output_boolean
output_movemap
remove_silent_file_if_it_exists
reroot
reroot_based_on_full_model_info
revise_root_and_moving_res
revise_root_and_moving_res_list
slice
slice_out_pose
split_pose
switch_focus_among_poses_randomly
switch_focus_to_other_pose
virtualize_side_chains
Variables
__package__
[
hide private
]