AllowPdbIdFilterBestTotalScoreSelectorBoundedCollector_CompareTotalScoreBoundedCollector_protocols_frag_picker_CompareTotalScore_tCS2ndShiftCSTalosIOCandidatesCollectorCompareByScoreCombinationCompareQueryPositionCompareScoreComponentCompareTotalScoreCompositeFragmentSelectorContactContactCountsContactTypeCustomScoreSelectorDenyPdbIdFilterDiversifyCrmsdByClusteringDiversifyCrmsdSelectorDiversifyDihedralsSelectorFragmentCandidateFragmentComparatorBaseFragmentPickerFragmentScoreFilterFragmentScoreFilterCreatorFragmentSelectingRuleGrabAllCollectorJCouplingIOLAMBEGO_IOLazySortedVector1_std_pair_std_shared_ptr_protocols_frag_picker_FragmentCandidate_std_shared_ptr_protocols_frag_picker_scores_FragmentScoreMap_protocols_frag_picker_CompareByScoreCombination_tLazySortedVector1_std_pair_std_shared_ptr_protocols_frag_picker_FragmentCandidate_std_shared_ptr_protocols_frag_picker_scores_FragmentScoreMap_protocols_frag_picker_CompareTotalScore_tPdbIdChunkFilterPhiPsiTalosIOQuotaDebugSidechainContactDistCutoffTorsionBinIOVallChunkVallChunkFilterVallProviderVallResiduecontact_name()contact_type()convert_binary_checkpoint()run_command()sa_faraggi_max()LoopRebuildLoopRefineRBSegmentRelaxImplRBSegmentRelax_main()ddG_main()RNAAtomType_xmlNodeadd_all_rosetta_options()add_rosetta_options_0()add_rosetta_options_1()add_rosetta_options_10()add_rosetta_options_11()add_rosetta_options_12()add_rosetta_options_13()add_rosetta_options_14()add_rosetta_options_15()add_rosetta_options_2()add_rosetta_options_3()add_rosetta_options_4()add_rosetta_options_5()add_rosetta_options_6()add_rosetta_options_7()add_rosetta_options_8()add_rosetta_options_9()tm