o2prime — PyRosetta 4.0 documentation

RotamerDump
aa_composition
abinitio
analysis
anchored_design
antibody
antibody_legacy
backbone_moves
backrub
branch_angle
canonical_sampling
carbohydrates
cartesian
checkpoint
cluster
comparative_modeling
constraint_generator
constraints_additional
contact_map
coupled_moves
cryst
cyclic_peptide
cyclic_peptide_predict
ddG
ddg
denovo_design
design_opt
dna
docking
domain_assembly
electron_density
environment
enzdes
enzymatic_movers
evaluation
evolution
features
fibril
filters
fldsgn
flexpack
flexpep_docking
floppy_tail
flxbb
fold_from_loops
forge
frag_picker
frags
generalized_kinematic_closure
genetic_algorithm
geometry
grafting
hbnet
helical_bundle
helix_capper
hotspot_hashing
hybridization
hydrate
idealize
indel
indexed_structure_store
init
interface
jd2
jobdist
jumping
kinematic_closure
kinmatch
ligand_docking
loop_build
loop_grower
loop_modeler
loop_modeling
loophash
loops
magnesium
make_rot_lib
match
matdes
md
mean_field
medal
membrane
metal_interface
motif_grafting
motifs
moves
mpi_refinement
multistate_design
ncbb
neighbor
noesy_assign
nonlocal
normalmode
optimize_weights
pack_daemon
parser
pb_potential
peptide_deriver
pmut_scan
pockets
pose_length_moves
pose_reporters
pose_selectors
protein_interface_design
qsar
rbsegment_relax
recces
relax
residue_optimization
residue_selectors
rigid
rna
rosetta_scripts
rotamer_recovery
rpc
sasa_scores
scoring
seeded_abinitio
sewing
sic_dock
simple_filters
simple_moves
sparta
ss_prediction
star
stepwise
- legacy
- modeler
  - align
  - movemap
  - options
  - packer
  - polar_hydrogens
  - precomputed
  - protein
  - rna
    - bulge
    - checker
    - o2prime
    - phosphate
    - rigid_body
    - sugar
  - working_parameters
- monte_carlo
- options
- sampler
- screener
- setup
struct_fragment
surface_docking
symmetric_docking
toolbox
topology_broker
trajectory
ub_e2c
unfolded_state_energy_calculator
viewer
vip
wum

std

utility

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o2prime¶