make_rot_lib¶

Bindings for protocols::make_rot_lib namespace

class pyrosetta.rosetta.protocols.make_rot_lib.MakeRotLibJobInputter¶

Bases: pyrosetta.rosetta.protocols.jd2.JobInputter

JobInputter that creats jobs based on MakeRotLib option files.

__delattr__¶: Implement delattr(self, name).

__dir__() → list¶: default dir() implementation

__eq__¶: Return self==value.

__format__()¶: default object formatter

__ge__¶: Return self>=value.

__getattribute__¶: Return getattr(self, name).

__gt__¶: Return self>value.

__hash__¶: Return hash(self).

__init__(*args, **kwargs)¶

Overloaded function.

__init__(self: pyrosetta.rosetta.protocols.make_rot_lib.MakeRotLibJobInputter) -> None
__init__(self: pyrosetta.rosetta.protocols.make_rot_lib.MakeRotLibJobInputter, arg0: pyrosetta.rosetta.protocols.make_rot_lib.MakeRotLibJobInputter) -> None

__init_subclass__()¶

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__¶: Return self<=value.

__lt__¶: Return self<value.

__ne__¶: Return self!=value.

__new__()¶: Create and return a new object. See help(type) for accurate signature.

__reduce__()¶: helper for pickle

__reduce_ex__()¶: helper for pickle

__repr__¶: Return repr(self).

__setattr__¶: Implement setattr(self, name, value).

__sizeof__() → int¶: size of object in memory, in bytes

__str__¶: Return str(self).

__subclasshook__()¶

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.protocols.make_rot_lib.MakeRotLibJobInputter, : pyrosetta.rosetta.protocols.make_rot_lib.MakeRotLibJobInputter) → pyrosetta.rosetta.protocols.make_rot_lib.MakeRotLibJobInputter¶: C++: protocols::make_rot_lib::MakeRotLibJobInputter::operator=(const class protocols::make_rot_lib::MakeRotLibJobInputter &) –> class protocols::make_rot_lib::MakeRotLibJobInputter &

fill_jobs(self: pyrosetta.rosetta.protocols.make_rot_lib.MakeRotLibJobInputter, jobs: pyrosetta.rosetta.protocols.jd2.JobsContainer) → None¶

Determines what jobs exist from the make_rot_lib options file

C++: protocols::make_rot_lib::MakeRotLibJobInputter::fill_jobs(class protocols::jd2::JobsContainer &) –> void

get_self_ptr(self: pyrosetta.rosetta.protocols.jd2.JobInputter) → pyrosetta.rosetta.protocols.jd2.JobInputter¶

Get self owning pointers.

C++: protocols::jd2::JobInputter::get_self_ptr() –> class std::shared_ptr<class protocols::jd2::JobInputter>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.jd2.JobInputter) → pyrosetta.rosetta.std.weak_ptr_protocols_jd2_JobInputter_t¶

Get self weak pointers.

C++: protocols::jd2::JobInputter::get_self_weak_ptr() –> class std::weak_ptr<class protocols::jd2::JobInputter>

input_source(self: pyrosetta.rosetta.protocols.make_rot_lib.MakeRotLibJobInputter) → pyrosetta.rosetta.protocols.jd2.JobInputterInputSource.Enum¶

Return the type of input source that the MakeRotLibJobInputter is currently using.

C++: protocols::make_rot_lib::MakeRotLibJobInputter::input_source() const –> enum protocols::jd2::JobInputterInputSource::Enum

job_inputter_input_source_to_string(source: pyrosetta.rosetta.protocols.jd2.JobInputterInputSource.Enum) → str¶

call this with input_source() to get the input source of a: particular job inputter

C++: protocols::jd2::JobInputter::job_inputter_input_source_to_string(enum protocols::jd2::JobInputterInputSource::Enum) –> std::string

pose_from_job(self: pyrosetta.rosetta.protocols.make_rot_lib.MakeRotLibJobInputter, pose: pyrosetta.rosetta.core.pose.Pose, job: pyrosetta.rosetta.protocols.jd2.Job) → None¶

this function is responsible for filling the pose reference with the pose indicated by the job

C++: protocols::make_rot_lib::MakeRotLibJobInputter::pose_from_job(class core::pose::Pose &, class std::shared_ptr<class protocols::jd2::Job>) –> void

update_jobs_list(self: pyrosetta.rosetta.protocols.jd2.JobInputter, jobs: protocols::jd2::JobsContainer) → None¶

This function is only called by certain JobInputters to update the jobs list after it has already been created.

An example case would be the LargeNstructJobInputter, which uses this function to load additional jobs after the first N have started to come back.

C++: protocols::jd2::JobInputter::update_jobs_list(class std::shared_ptr<class protocols::jd2::JobsContainer>) –> void

updates_jobs_list(self: pyrosetta.rosetta.protocols.jd2.JobInputter) → bool¶

Does this type of JobInputter update the jobs list?

False by default. Override this function in derived classes to make it true.

C++: protocols::jd2::JobInputter::updates_jobs_list() const –> bool

class pyrosetta.rosetta.protocols.make_rot_lib.MakeRotLibOptionsData¶

Bases: pybind11_builtins.pybind11_object

Stores all options contained in a MakeRotLib option file

__delattr__¶: Implement delattr(self, name).

__dir__() → list¶: default dir() implementation

__eq__¶: Return self==value.

__format__()¶: default object formatter

__ge__¶: Return self>=value.

__getattribute__¶: Return getattr(self, name).

__gt__¶: Return self>value.

__hash__¶: Return hash(self).