sic_dock

Bindings for protocols::sic_dock namespace

class pyrosetta.rosetta.protocols.sic_dock.JointScore

Bases: pyrosetta.rosetta.protocols.sic_dock.RigidScore

/// composite scores

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

  1. __init__(self: pyrosetta.rosetta.protocols.sic_dock.JointScore) -> None
  2. __init__(self: pyrosetta.rosetta.protocols.sic_dock.JointScore, scores: pyrosetta.rosetta.utility.vector1_std_shared_ptr_const_protocols_sic_dock_RigidScore_t, weights: pyrosetta.rosetta.utility.vector1_double) -> None
__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

add_score(self: pyrosetta.rosetta.protocols.sic_dock.JointScore, score: pyrosetta.rosetta.protocols.sic_dock.RigidScore, weight: float) → None

C++: protocols::sic_dock::JointScore::add_score(class std::shared_ptr<const class protocols::sic_dock::RigidScore>, double) –> void

assign(self: pyrosetta.rosetta.protocols.sic_dock.JointScore, : pyrosetta.rosetta.protocols.sic_dock.JointScore) → pyrosetta.rosetta.protocols.sic_dock.JointScore

C++: protocols::sic_dock::JointScore::operator=(const class protocols::sic_dock::JointScore &) –> class protocols::sic_dock::JointScore &

score(self: pyrosetta.rosetta.protocols.sic_dock.JointScore, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) → float

C++: protocols::sic_dock::JointScore::score(const struct numeric::Xforms &, const struct numeric::Xforms &) const –> double

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.sic_dock.JointScore, out: pyrosetta.rosetta.std.ostream) -> None
  2. show(self: pyrosetta.rosetta.protocols.sic_dock.JointScore, out: pyrosetta.rosetta.std.ostream, width: int) -> None

C++: protocols::sic_dock::JointScore::show(class std::basic_ostream<char> &, int) const –> void

  1. show(self: pyrosetta.rosetta.protocols.sic_dock.JointScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) -> None
  2. show(self: pyrosetta.rosetta.protocols.sic_dock.JointScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms, width: int) -> None

C++: protocols::sic_dock::JointScore::show(class std::basic_ostream<char> &, const struct numeric::Xforms &, const struct numeric::Xforms &, int) const –> void

type(self: pyrosetta.rosetta.protocols.sic_dock.JointScore) → str

C++: protocols::sic_dock::JointScore::type() const –> std::string

pyrosetta.rosetta.protocols.sic_dock.KMGT(x: float, w: int, d: int) → str

C++: protocols::sic_dock::KMGT(const double &, const int &, const int &) –> std::string

pyrosetta.rosetta.protocols.sic_dock.alignaxis(*args, **kwargs)

Overloaded function.

  1. alignaxis(pose: pyrosetta.rosetta.core.pose.Pose, newaxis: pyrosetta.rosetta.numeric.xyzVector_double_t, oldaxis: pyrosetta.rosetta.numeric.xyzVector_double_t) -> None
  2. alignaxis(pose: pyrosetta.rosetta.core.pose.Pose, newaxis: pyrosetta.rosetta.numeric.xyzVector_double_t, oldaxis: pyrosetta.rosetta.numeric.xyzVector_double_t, cen: pyrosetta.rosetta.numeric.xyzVector_double_t) -> None

C++: protocols::sic_dock::alignaxis(class core::pose::Pose &, class numeric::xyzVector<double>, class numeric::xyzVector<double>, class numeric::xyzVector<double>) –> void

pyrosetta.rosetta.protocols.sic_dock.alignaxis_xform(*args, **kwargs)

Overloaded function.

  1. alignaxis_xform(newaxis: pyrosetta.rosetta.numeric.xyzVector_double_t, oldaxis: pyrosetta.rosetta.numeric.xyzVector_double_t) -> pyrosetta.rosetta.numeric.xyzTransform_double_t
  2. alignaxis_xform(newaxis: pyrosetta.rosetta.numeric.xyzVector_double_t, oldaxis: pyrosetta.rosetta.numeric.xyzVector_double_t, cen: pyrosetta.rosetta.numeric.xyzVector_double_t) -> pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::sic_dock::alignaxis_xform(class numeric::xyzVector<double>, class numeric::xyzVector<double>, class numeric::xyzVector<double>) –> class numeric::xyzTransform<double>

pyrosetta.rosetta.protocols.sic_dock.auto_trim_floppy_termini(*args, **kwargs)

Overloaded function.

  1. auto_trim_floppy_termini(pose: pyrosetta.rosetta.core.pose.Pose) -> None
  2. auto_trim_floppy_termini(pose: pyrosetta.rosetta.core.pose.Pose, ttrim_cut: float) -> None
  3. auto_trim_floppy_termini(pose: pyrosetta.rosetta.core.pose.Pose, ttrim_cut: float, nfold: int) -> None

C++: protocols::sic_dock::auto_trim_floppy_termini(class core::pose::Pose &, const double, const unsigned long) –> void

pyrosetta.rosetta.protocols.sic_dock.cb_weight(*args, **kwargs)

Overloaded function.

  1. cb_weight(pose: pyrosetta.rosetta.core.pose.Pose, ires: int) -> float
  2. cb_weight(pose: pyrosetta.rosetta.core.pose.Pose, ires: int, distance_threshold: float) -> float

C++: protocols::sic_dock::cb_weight(const class core::pose::Pose &, unsigned long, double) –> double

pyrosetta.rosetta.protocols.sic_dock.cb_weight_map_from_pose(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.core.id.AtomID_Map_double_t

C++: protocols::sic_dock::cb_weight_map_from_pose(const class core::pose::Pose &) –> class core::id::AtomID_Map<double>

pyrosetta.rosetta.protocols.sic_dock.cb_weights_from_map(pose: pyrosetta.rosetta.core.pose.Pose, map: pyrosetta.rosetta.core.id.AtomID_Map_double_t) → pyrosetta.rosetta.utility.vector1_double

C++: protocols::sic_dock::cb_weights_from_map(const class core::pose::Pose &, const class core::id::AtomID_Map<double> &) –> class utility::vector1<double, class std::allocator<double> >

pyrosetta.rosetta.protocols.sic_dock.cb_weights_from_pose(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_double

C++: protocols::sic_dock::cb_weights_from_pose(const class core::pose::Pose &) –> class utility::vector1<double, class std::allocator<double> >

pyrosetta.rosetta.protocols.sic_dock.center_of_geom(*args, **kwargs)

Overloaded function.

  1. center_of_geom(pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.numeric.xyzVector_double_t
  2. center_of_geom(pose: pyrosetta.rosetta.core.pose.Pose, str: int) -> pyrosetta.rosetta.numeric.xyzVector_double_t
  3. center_of_geom(pose: pyrosetta.rosetta.core.pose.Pose, str: int, end: int) -> pyrosetta.rosetta.numeric.xyzVector_double_t

C++: protocols::sic_dock::center_of_geom(const class core::pose::Pose &, unsigned long, unsigned long) –> class numeric::xyzVector<double>

pyrosetta.rosetta.protocols.sic_dock.count_CBs(pose: pyrosetta.rosetta.core.pose.Pose) → int

C++: protocols::sic_dock::count_CBs(const class core::pose::Pose &) –> unsigned long

pyrosetta.rosetta.protocols.sic_dock.count_linkers(*args, **kwargs)

Overloaded function.

  1. count_linkers(lower: pyrosetta.rosetta.numeric.xyzTransform_double_t, upper: pyrosetta.rosetta.numeric.xyzTransform_double_t, loop_hash_library: pyrosetta.rosetta.protocols.loophash.LoopHashLibrary, loopsizes: pyrosetta.rosetta.utility.vector1_unsigned_long) -> int
  2. count_linkers(lower: pyrosetta.rosetta.numeric.xyzTransform_double_t, upper: pyrosetta.rosetta.numeric.xyzTransform_double_t, loop_hash_library: pyrosetta.rosetta.protocols.loophash.LoopHashLibrary, loopsizes: pyrosetta.rosetta.utility.vector1_unsigned_long, radius: int) -> int

C++: protocols::sic_dock::count_linkers(const class numeric::xyzTransform<double> &, const class numeric::xyzTransform<double> &, class std::shared_ptr<class protocols::loophash::LoopHashLibrary>, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, unsigned long) –> unsigned long

pyrosetta.rosetta.protocols.sic_dock.dump_loophash_linkers(*args, **kwargs)

Overloaded function.

  1. dump_loophash_linkers(lower: pyrosetta.rosetta.numeric.xyzTransform_double_t, upper: pyrosetta.rosetta.numeric.xyzTransform_double_t, loop_hash_library: pyrosetta.rosetta.protocols.loophash.LoopHashLibrary, loopsizes: pyrosetta.rosetta.utility.vector1_unsigned_long) -> int
  2. dump_loophash_linkers(lower: pyrosetta.rosetta.numeric.xyzTransform_double_t, upper: pyrosetta.rosetta.numeric.xyzTransform_double_t, loop_hash_library: pyrosetta.rosetta.protocols.loophash.LoopHashLibrary, loopsizes: pyrosetta.rosetta.utility.vector1_unsigned_long, radius: int) -> int
  3. dump_loophash_linkers(lower: pyrosetta.rosetta.numeric.xyzTransform_double_t, upper: pyrosetta.rosetta.numeric.xyzTransform_double_t, loop_hash_library: pyrosetta.rosetta.protocols.loophash.LoopHashLibrary, loopsizes: pyrosetta.rosetta.utility.vector1_unsigned_long, radius: int, outtag: str) -> int

C++: protocols::sic_dock::dump_loophash_linkers(const class numeric::xyzTransform<double> &, const class numeric::xyzTransform<double> &, class std::shared_ptr<class protocols::loophash::LoopHashLibrary>, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, unsigned long, const class std::basic_string<char> &) –> unsigned long

pyrosetta.rosetta.protocols.sic_dock.dump_points_pdb(*args, **kwargs)

Overloaded function.

  1. dump_points_pdb(p: pyrosetta.rosetta.utility.vector1_numeric_xyzVector_double_t, fn: str) -> None

C++: protocols::sic_dock::dump_points_pdb(const class utility::vector1<class numeric::xyzVector<double>, class std::allocator<class numeric::xyzVector<double> > > &, class std::basic_string<char>) –> void

  1. dump_points_pdb(p: pyrosetta.rosetta.utility.vector1_numeric_xyzVector_double_t, t: pyrosetta.rosetta.numeric.xyzVector_double_t, fn: str) -> None

C++: protocols::sic_dock::dump_points_pdb(const class utility::vector1<class numeric::xyzVector<double>, class std::allocator<class numeric::xyzVector<double> > > &, class numeric::xyzVector<double>, class std::basic_string<char>) –> void

pyrosetta.rosetta.protocols.sic_dock.flood_fill3D(i: int, j: int, k: int, grid: ObjexxFCL::FArray3D<double>, t: float) → int

C++: protocols::sic_dock::flood_fill3D(int, int, int, class ObjexxFCL::FArray3D<double> &, double) –> int

pyrosetta.rosetta.protocols.sic_dock.get_CB_Vecs_from_map(pose: pyrosetta.rosetta.core.pose.Pose, map: pyrosetta.rosetta.core.id.AtomID_Map_double_t) → pyrosetta.rosetta.utility.vector1_numeric_xyzVector_double_t

C++: protocols::sic_dock::get_CB_Vecs_from_map(const class core::pose::Pose &, const class core::id::AtomID_Map<double> &) –> class utility::vector1<class numeric::xyzVector<double>, class std::allocator<class numeric::xyzVector<double> > >

pyrosetta.rosetta.protocols.sic_dock.get_CB_Vecs_from_pose(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_numeric_xyzVector_double_t

C++: protocols::sic_dock::get_CB_Vecs_from_pose(const class core::pose::Pose &) –> class utility::vector1<class numeric::xyzVector<double>, class std::allocator<class numeric::xyzVector<double> > >

pyrosetta.rosetta.protocols.sic_dock.get_leap_6dof(lower: pyrosetta.rosetta.numeric.xyzTransform_double_t, upper: pyrosetta.rosetta.numeric.xyzTransform_double_t) → pyrosetta.rosetta.utility.fixedsizearray1_double_6_t

C++: protocols::sic_dock::get_leap_6dof(const class numeric::xyzTransform<double> &, const class numeric::xyzTransform<double> &) –> class utility::fixedsizearray1<double, 6>

pyrosetta.rosetta.protocols.sic_dock.get_leap_lower_stub(pose: pyrosetta.rosetta.core.pose.Pose, ir: int) → pyrosetta.rosetta.protocols.sic_dock.Vec3

C++: protocols::sic_dock::get_leap_lower_stub(const class core::pose::Pose &, unsigned long) –> struct protocols::sic_dock::Vec3

pyrosetta.rosetta.protocols.sic_dock.get_leap_upper_stub(pose: pyrosetta.rosetta.core.pose.Pose, ir: int) → pyrosetta.rosetta.protocols.sic_dock.Vec3

C++: protocols::sic_dock::get_leap_upper_stub(const class core::pose::Pose &, unsigned long) –> struct protocols::sic_dock::Vec3

pyrosetta.rosetta.protocols.sic_dock.get_rg(p: pyrosetta.rosetta.core.pose.Pose) → float

C++: protocols::sic_dock::get_rg(const class core::pose::Pose &) –> double

pyrosetta.rosetta.protocols.sic_dock.get_termini_from_pose(*args, **kwargs)

Overloaded function.

  1. get_termini_from_pose(pose: pyrosetta.rosetta.core.pose.Pose, ir: int, lowers: pyrosetta.rosetta.utility.vector1_std_pair_unsigned_long_protocols_sic_dock_Vec3_t, uppers: pyrosetta.rosetta.utility.vector1_std_pair_unsigned_long_protocols_sic_dock_Vec3_t) -> None

C++: protocols::sic_dock::get_termini_from_pose(const class core::pose::Pose &, unsigned long, class utility::vector1<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3>, class std::allocator<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3> > > &, class utility::vector1<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3>, class std::allocator<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3> > > &) –> void

  1. get_termini_from_pose(pose: pyrosetta.rosetta.core.pose.Pose, lowers: pyrosetta.rosetta.utility.vector1_std_pair_unsigned_long_protocols_sic_dock_Vec3_t, uppers: pyrosetta.rosetta.utility.vector1_std_pair_unsigned_long_protocols_sic_dock_Vec3_t) -> None

C++: protocols::sic_dock::get_termini_from_pose(const class core::pose::Pose &, class utility::vector1<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3>, class std::allocator<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3> > > &, class utility::vector1<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3>, class std::allocator<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3> > > &) –> void

pyrosetta.rosetta.protocols.sic_dock.get_xform_stats(sir: pyrosetta.rosetta.numeric.xyzTransform_double_t, sjr: pyrosetta.rosetta.numeric.xyzTransform_double_t, dx: float, dy: float, dz: float, ex: float, ey: float, ez: float) → None

C++: protocols::sic_dock::get_xform_stats(const class numeric::xyzTransform<double> &, const class numeric::xyzTransform<double> &, double &, double &, double &, double &, double &, double &) –> void

pyrosetta.rosetta.protocols.sic_dock.getxform(move_resi: pyrosetta.rosetta.core.conformation.Residue, fixd_resi: pyrosetta.rosetta.core.conformation.Residue) → pyrosetta.rosetta.core.kinematics.Stub

C++: protocols::sic_dock::getxform(const class core::conformation::Residue &, const class core::conformation::Residue &) –> class core::kinematics::Stub

pyrosetta.rosetta.protocols.sic_dock.invstub(a: pyrosetta.rosetta.numeric.xyzTransform_double_t) → pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::sic_dock::invstub(const class numeric::xyzTransform<double> &) –> class numeric::xyzTransform<double>

pyrosetta.rosetta.protocols.sic_dock.linker_count2score(count: int) → float

C++: protocols::sic_dock::linker_count2score(unsigned long) –> double

pyrosetta.rosetta.protocols.sic_dock.make_Cx(*args, **kwargs)

Overloaded function.

  1. make_Cx(pose: pyrosetta.rosetta.core.pose.Pose, N: int) -> None
  2. make_Cx(pose: pyrosetta.rosetta.core.pose.Pose, N: int, axis: pyrosetta.rosetta.numeric.xyzVector_double_t) -> None

C++: protocols::sic_dock::make_Cx(class core::pose::Pose &, int, class numeric::xyzVector<double>) –> void

pyrosetta.rosetta.protocols.sic_dock.multstubs(a: pyrosetta.rosetta.numeric.xyzTransform_double_t, b: pyrosetta.rosetta.numeric.xyzTransform_double_t) → pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::sic_dock::multstubs(const class numeric::xyzTransform<double> &, const class numeric::xyzTransform<double> &) –> class numeric::xyzTransform<double>

pyrosetta.rosetta.protocols.sic_dock.neighbor_count(*args, **kwargs)

Overloaded function.

  1. neighbor_count(pose: pyrosetta.rosetta.core.pose.Pose, ires: int) -> int
  2. neighbor_count(pose: pyrosetta.rosetta.core.pose.Pose, ires: int, distance_threshold: float) -> int

C++: protocols::sic_dock::neighbor_count(const class core::pose::Pose &, int, double) –> int

pyrosetta.rosetta.protocols.sic_dock.pose1_has_most_CBs(pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose) → bool

C++: protocols::sic_dock::pose1_has_most_CBs(const class core::pose::Pose &, const class core::pose::Pose &) –> bool

pyrosetta.rosetta.protocols.sic_dock.pose_with_most_CBs(pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::sic_dock::pose_with_most_CBs(const class core::pose::Pose &, const class core::pose::Pose &) –> const class core::pose::Pose &

pyrosetta.rosetta.protocols.sic_dock.projperp(u: pyrosetta.rosetta.numeric.xyzVector_double_t, v: pyrosetta.rosetta.numeric.xyzVector_double_t) → pyrosetta.rosetta.numeric.xyzVector_double_t

C++: protocols::sic_dock::projperp(const class numeric::xyzVector<double> &, const class numeric::xyzVector<double> &) –> class numeric::xyzVector<double>

pyrosetta.rosetta.protocols.sic_dock.range(beg: int, end: int) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::sic_dock::range(unsigned long, unsigned long) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.sic_dock.read_biounit(*args, **kwargs)

Overloaded function.

  1. read_biounit(fname: str, pose: pyrosetta.rosetta.core.pose.Pose) -> bool
  2. read_biounit(fname: str, pose: pyrosetta.rosetta.core.pose.Pose, max_res: int) -> bool
  3. read_biounit(fname: str, pose: pyrosetta.rosetta.core.pose.Pose, max_res: int, debug: bool) -> bool

C++: protocols::sic_dock::read_biounit(const class std::basic_string<char> &, class core::pose::Pose &, int, bool) –> bool

  1. read_biounit(fname: str, pose: pyrosetta.rosetta.core.pose.Pose, bfactors: pyrosetta.rosetta.utility.vector1_double, occupancy: pyrosetta.rosetta.utility.vector1_double) -> bool
  2. read_biounit(fname: str, pose: pyrosetta.rosetta.core.pose.Pose, bfactors: pyrosetta.rosetta.utility.vector1_double, occupancy: pyrosetta.rosetta.utility.vector1_double, max_res: int) -> bool
  3. read_biounit(fname: str, pose: pyrosetta.rosetta.core.pose.Pose, bfactors: pyrosetta.rosetta.utility.vector1_double, occupancy: pyrosetta.rosetta.utility.vector1_double, max_res: int, debug: bool) -> bool

C++: protocols::sic_dock::read_biounit(const class std::basic_string<char> &, class core::pose::Pose &, class utility::vector1<double, class std::allocator<double> > &, class utility::vector1<double, class std::allocator<double> > &, int, bool) –> bool

pyrosetta.rosetta.protocols.sic_dock.residue_is_floppy(*args, **kwargs)

Overloaded function.

  1. residue_is_floppy(pose: pyrosetta.rosetta.core.pose.Pose, ir: int) -> bool
  2. residue_is_floppy(pose: pyrosetta.rosetta.core.pose.Pose, ir: int, ttrim_cut: float) -> bool
  3. residue_is_floppy(pose: pyrosetta.rosetta.core.pose.Pose, ir: int, ttrim_cut: float, nfold: int) -> bool

C++: protocols::sic_dock::residue_is_floppy(const class core::pose::Pose &, const unsigned long, const double, const unsigned long) –> bool

pyrosetta.rosetta.protocols.sic_dock.rot_pose(*args, **kwargs)

Overloaded function.

  1. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, rot: pyrosetta.rosetta.numeric.xyzMatrix_double_t) -> None
  2. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, rot: pyrosetta.rosetta.numeric.xyzMatrix_double_t, start: int) -> None
  3. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, rot: pyrosetta.rosetta.numeric.xyzMatrix_double_t, start: int, end: int) -> None

C++: protocols::sic_dock::rot_pose(class core::pose::Pose &, const class numeric::xyzMatrix<double> &, unsigned long, unsigned long) –> void

  1. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, rot: pyrosetta.rosetta.numeric.xyzMatrix_double_t, cen: pyrosetta.rosetta.numeric.xyzVector_double_t) -> None
  2. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, rot: pyrosetta.rosetta.numeric.xyzMatrix_double_t, cen: pyrosetta.rosetta.numeric.xyzVector_double_t, start: int) -> None
  3. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, rot: pyrosetta.rosetta.numeric.xyzMatrix_double_t, cen: pyrosetta.rosetta.numeric.xyzVector_double_t, start: int, end: int) -> None

C++: protocols::sic_dock::rot_pose(class core::pose::Pose &, const class numeric::xyzMatrix<double> &, const class numeric::xyzVector<double> &, unsigned long, unsigned long) –> void

  1. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, axis: pyrosetta.rosetta.numeric.xyzVector_double_t, ang: float) -> None
  2. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, axis: pyrosetta.rosetta.numeric.xyzVector_double_t, ang: float, start: int) -> None
  3. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, axis: pyrosetta.rosetta.numeric.xyzVector_double_t, ang: float, start: int, end: int) -> None

C++: protocols::sic_dock::rot_pose(class core::pose::Pose &, const class numeric::xyzVector<double> &, const double &, unsigned long, unsigned long) –> void

  1. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, axis: pyrosetta.rosetta.numeric.xyzVector_double_t, ang: float, cen: pyrosetta.rosetta.numeric.xyzVector_double_t) -> None
  2. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, axis: pyrosetta.rosetta.numeric.xyzVector_double_t, ang: float, cen: pyrosetta.rosetta.numeric.xyzVector_double_t, start: int) -> None
  3. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, axis: pyrosetta.rosetta.numeric.xyzVector_double_t, ang: float, cen: pyrosetta.rosetta.numeric.xyzVector_double_t, start: int, end: int) -> None

C++: protocols::sic_dock::rot_pose(class core::pose::Pose &, const class numeric::xyzVector<double> &, const double &, const class numeric::xyzVector<double> &, unsigned long, unsigned long) –> void

pyrosetta.rosetta.protocols.sic_dock.slide_into_contact_and_score(sic: pyrosetta.rosetta.protocols.sic_dock.SICFast, sfxn: pyrosetta.rosetta.protocols.sic_dock.RigidScore, xa: pyrosetta.rosetta.numeric.xyzTransform_double_t, xb: pyrosetta.rosetta.numeric.xyzTransform_double_t, ori: pyrosetta.rosetta.numeric.xyzVector_double_t, score: float) → float

C++: protocols::sic_dock::slide_into_contact_and_score(const class protocols::sic_dock::SICFast &, const class protocols::sic_dock::RigidScore &, class numeric::xyzTransform<double> &, const class numeric::xyzTransform<double> &, const class numeric::xyzVector<double> &, double &) –> double

pyrosetta.rosetta.protocols.sic_dock.slide_into_contact_and_score_DEPRICATED(sic: pyrosetta.rosetta.protocols.sic_dock.SICFast, sfxn: pyrosetta.rosetta.protocols.sic_dock.RigidScore, xa: pyrosetta.rosetta.core.kinematics.Stub, xb: pyrosetta.rosetta.core.kinematics.Stub, ori: pyrosetta.rosetta.numeric.xyzVector_double_t, score: float) → float

C++: protocols::sic_dock::slide_into_contact_and_score_DEPRICATED(const class protocols::sic_dock::SICFast &, const class protocols::sic_dock::RigidScore &, class core::kinematics::Stub &, const class core::kinematics::Stub &, const class numeric::xyzVector<double> &, double &) –> double

pyrosetta.rosetta.protocols.sic_dock.trans_pose(*args, **kwargs)

Overloaded function.

  1. trans_pose(pose: pyrosetta.rosetta.core.pose.Pose, trans: pyrosetta.rosetta.numeric.xyzVector_double_t) -> None
  2. trans_pose(pose: pyrosetta.rosetta.core.pose.Pose, trans: pyrosetta.rosetta.numeric.xyzVector_double_t, start: int) -> None
  3. trans_pose(pose: pyrosetta.rosetta.core.pose.Pose, trans: pyrosetta.rosetta.numeric.xyzVector_double_t, start: int, end: int) -> None

C++: protocols::sic_dock::trans_pose(class core::pose::Pose &, const class numeric::xyzVector<double> &, unsigned long, unsigned long) –> void

pyrosetta.rosetta.protocols.sic_dock.vec3_to_stub(*args, **kwargs)

Overloaded function.

  1. vec3_to_stub(v3: pyrosetta.rosetta.protocols.sic_dock.Vec3) -> pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::sic_dock::vec3_to_stub(const struct protocols::sic_dock::Vec3 &) –> class numeric::xyzTransform<double>

  1. vec3_to_stub(xform: pyrosetta.rosetta.numeric.xyzTransform_double_t, v3: pyrosetta.rosetta.protocols.sic_dock.Vec3) -> pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::sic_dock::vec3_to_stub(const class numeric::xyzTransform<double> &, const struct protocols::sic_dock::Vec3 &) –> class numeric::xyzTransform<double>

pyrosetta.rosetta.protocols.sic_dock.xform_pose(*args, **kwargs)

Overloaded function.

  1. xform_pose(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.core.kinematics.Stub) -> None
  2. xform_pose(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.core.kinematics.Stub, sres: int) -> None
  3. xform_pose(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.core.kinematics.Stub, sres: int, eres: int) -> None

C++: protocols::sic_dock::xform_pose(class core::pose::Pose &, const class core::kinematics::Stub &, unsigned long, unsigned long) –> void

  1. xform_pose(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.numeric.xyzTransform_double_t) -> None
  2. xform_pose(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.numeric.xyzTransform_double_t, sres: int) -> None
  3. xform_pose(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.numeric.xyzTransform_double_t, sres: int, eres: int) -> None

C++: protocols::sic_dock::xform_pose(class core::pose::Pose &, const class numeric::xyzTransform<double> &, unsigned long, unsigned long) –> void

pyrosetta.rosetta.protocols.sic_dock.xform_pose_rev(*args, **kwargs)

Overloaded function.

  1. xform_pose_rev(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.core.kinematics.Stub) -> None

C++: protocols::sic_dock::xform_pose_rev(class core::pose::Pose &, const class core::kinematics::Stub &) –> void

  1. xform_pose_rev(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.numeric.xyzTransform_double_t) -> None

C++: protocols::sic_dock::xform_pose_rev(class core::pose::Pose &, const class numeric::xyzTransform<double> &) –> void