neighbor

Bindings for protocols::neighbor namespace

class pyrosetta.rosetta.protocols.neighbor.Neighborhood

Bases: pybind11_builtins.pybind11_object

A class to determine the neighborhood of a set of residues within a pose

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__

Initialize self. See help(type(self)) for accurate signature.

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.protocols.neighbor.Neighborhood, : pyrosetta.rosetta.protocols.neighbor.Neighborhood) → pyrosetta.rosetta.protocols.neighbor.Neighborhood

C++: protocols::neighbor::Neighborhood::operator=(const class protocols::neighbor::Neighborhood &) –> class protocols::neighbor::Neighborhood &

get(self: pyrosetta.rosetta.protocols.neighbor.Neighborhood) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::neighbor::Neighborhood::get() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

pyrosetta.rosetta.protocols.neighbor.in_ngbat_sphere(r1: pyrosetta.rosetta.core.conformation.Residue, r2: pyrosetta.rosetta.core.conformation.Residue, ps: pyrosetta.rosetta.core.pose.Pose) → bool

C++: protocols::neighbor::in_ngbat_sphere(const class core::conformation::Residue &, const class core::conformation::Residue &, const class core::pose::Pose &) –> bool

pyrosetta.rosetta.protocols.neighbor.in_nrg_graph(r1: pyrosetta.rosetta.core.conformation.Residue, r2: pyrosetta.rosetta.core.conformation.Residue, ps: pyrosetta.rosetta.core.pose.Pose) → bool

C++: protocols::neighbor::in_nrg_graph(const class core::conformation::Residue &, const class core::conformation::Residue &, const class core::pose::Pose &) –> bool