genetic_algorithm

Bindings for protocols::genetic_algorithm namespace

class pyrosetta.rosetta.protocols.genetic_algorithm.DiscreteRandomizer

Bases: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(self: pyrosetta.rosetta.protocols.genetic_algorithm.DiscreteRandomizer) → None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

add_choice(self: pyrosetta.rosetta.protocols.genetic_algorithm.DiscreteRandomizer, choice: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) → None

C++: protocols::genetic_algorithm::DiscreteRandomizer::add_choice(const class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> &) –> void

assign(self: pyrosetta.rosetta.protocols.genetic_algorithm.DiscreteRandomizer, : pyrosetta.rosetta.protocols.genetic_algorithm.DiscreteRandomizer) → pyrosetta.rosetta.protocols.genetic_algorithm.DiscreteRandomizer

C++: protocols::genetic_algorithm::DiscreteRandomizer::operator=(const class protocols::genetic_algorithm::DiscreteRandomizer &) –> class protocols::genetic_algorithm::DiscreteRandomizer &

choices(self: pyrosetta.rosetta.protocols.genetic_algorithm.DiscreteRandomizer) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t

C++: protocols::genetic_algorithm::DiscreteRandomizer::choices() const –> const class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > > &

crossover(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer, entity1: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, entity2: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → None

C++: protocols::genetic_algorithm::EntityRandomizer::crossover(class protocols::genetic_algorithm::Entity &, class protocols::genetic_algorithm::Entity &) –> void

entity_length(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer) → int

C++: protocols::genetic_algorithm::EntityRandomizer::entity_length() const –> unsigned long

entity_template(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer) → pyrosetta.rosetta.protocols.genetic_algorithm.Entity

C++: protocols::genetic_algorithm::EntityRandomizer::entity_template() const –> class std::shared_ptr<const class protocols::genetic_algorithm::Entity>

library_size(self: pyrosetta.rosetta.protocols.genetic_algorithm.DiscreteRandomizer) → int

C++: protocols::genetic_algorithm::DiscreteRandomizer::library_size() const –> unsigned long

mutate(self: pyrosetta.rosetta.protocols.genetic_algorithm.DiscreteRandomizer, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → None

C++: protocols::genetic_algorithm::DiscreteRandomizer::mutate(class protocols::genetic_algorithm::Entity &) –> void

mutation_rate(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer) → float

C++: protocols::genetic_algorithm::EntityRandomizer::mutation_rate() const –> double

random_entity(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer) → pyrosetta.rosetta.protocols.genetic_algorithm.Entity

C++: protocols::genetic_algorithm::EntityRandomizer::random_entity() –> class std::shared_ptr<class protocols::genetic_algorithm::Entity>

set_choices(self: pyrosetta.rosetta.protocols.genetic_algorithm.DiscreteRandomizer, choices: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t) → None

C++: protocols::genetic_algorithm::DiscreteRandomizer::set_choices(const class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > > &) –> void

set_entity_template(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → None

C++: protocols::genetic_algorithm::EntityRandomizer::set_entity_template(class std::shared_ptr<const class protocols::genetic_algorithm::Entity>) –> void

set_mutation_rate(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer, rate: float) → None

C++: protocols::genetic_algorithm::EntityRandomizer::set_mutation_rate(double) –> void

class pyrosetta.rosetta.protocols.genetic_algorithm.Entity

Bases: pybind11_builtins.pybind11_object

Entity: a vector of EntityElements used to describe the state for a system under optimization.

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, other: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → bool

C++: protocols::genetic_algorithm::Entity::operator==(const class protocols::genetic_algorithm::Entity &) const –> bool

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) -> None
2. __init__(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, arg0: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) -> None
3. __init__(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, line: str) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → str

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, : pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → pyrosetta.rosetta.protocols.genetic_algorithm.Entity

C++: protocols::genetic_algorithm::Entity::operator=(const class protocols::genetic_algorithm::Entity &) –> class protocols::genetic_algorithm::Entity &

clone(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → pyrosetta.rosetta.protocols.genetic_algorithm.Entity

C++: protocols::genetic_algorithm::Entity::clone() const –> class std::shared_ptr<class protocols::genetic_algorithm::Entity>

fitness(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → float

C++: protocols::genetic_algorithm::Entity::fitness() const –> double

fitness_valid(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → bool

C++: protocols::genetic_algorithm::Entity::fitness_valid() const –> bool

read_checkpoint(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, is: pyrosetta.rosetta.std.istream) → bool

C++: protocols::genetic_algorithm::Entity::read_checkpoint(class std::basic_istream<char> &) –> bool

set_entity_element(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, index: int, element: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) → None

C++: protocols::genetic_algorithm::Entity::set_entity_element(unsigned long, class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>) –> void

set_fitness(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, val: float) → None

C++: protocols::genetic_algorithm::Entity::set_fitness(double) –> void

set_traits(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, traits: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t) → None

C++: protocols::genetic_algorithm::Entity::set_traits(const class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > > &) –> void

set_traits_size(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, size: int) → None

C++: protocols::genetic_algorithm::Entity::set_traits_size(unsigned long) –> void

show(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, os: pyrosetta.rosetta.std.ostream) → None

C++: protocols::genetic_algorithm::Entity::show(class std::basic_ostream<char> &) const –> void

to_string(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → str

C++: protocols::genetic_algorithm::Entity::to_string() const –> std::string

traits(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t

C++: protocols::genetic_algorithm::Entity::traits() const –> const class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > > &

traits_string(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → str

C++: protocols::genetic_algorithm::Entity::traits_string() const –> std::string

write_checkpoint(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, os: pyrosetta.rosetta.std.ostream) → None

C++: protocols::genetic_algorithm::Entity::write_checkpoint(class std::basic_ostream<char> &) const –> void

class pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement

Bases: pybind11_builtins.pybind11_object

Entity element

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement, rhs: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) → bool

C++: protocols::genetic_algorithm::EntityElement::operator==(const class protocols::genetic_algorithm::EntityElement &) const –> bool

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) -> None
2. __init__(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement, index: int) -> None
3. __init__(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement, word: str) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement, rhs: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) → pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement

C++: protocols::genetic_algorithm::EntityElement::operator=(const class protocols::genetic_algorithm::EntityElement &) –> class protocols::genetic_algorithm::EntityElement &

clone(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) → pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement

C++: protocols::genetic_algorithm::EntityElement::clone() –> class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>

fresh_instance(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) → pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement

C++: protocols::genetic_algorithm::EntityElement::fresh_instance() –> class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>

hash(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) → int

C++: protocols::genetic_algorithm::EntityElement::hash() const –> unsigned long

index(*args, **kwargs)

Overloaded function.

1. index(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) -> int

C++: protocols::genetic_algorithm::EntityElement::index() const –> unsigned long

2. index(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement, index: int) -> None

C++: protocols::genetic_algorithm::EntityElement::index(unsigned long) –> void

name(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) → str

C++: protocols::genetic_algorithm::EntityElement::name() const –> std::string

to_string(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) → str

C++: protocols::genetic_algorithm::EntityElement::to_string() const –> std::string

class pyrosetta.rosetta.protocols.genetic_algorithm.EntityElementCreator

Bases: pybind11_builtins.pybind11_object

Entity element creator

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElementCreator) → None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElementCreator, : pyrosetta.rosetta.protocols.genetic_algorithm.EntityElementCreator) → pyrosetta.rosetta.protocols.genetic_algorithm.EntityElementCreator

C++: protocols::genetic_algorithm::EntityElementCreator::operator=(const class protocols::genetic_algorithm::EntityElementCreator &) –> class protocols::genetic_algorithm::EntityElementCreator &

new_entity(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElementCreator, word: str) → pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement

C++: protocols::genetic_algorithm::EntityElementCreator::new_entity(const class std::basic_string<char> &) –> class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>

widget_name(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElementCreator) → str

C++: protocols::genetic_algorithm::EntityElementCreator::widget_name() const –> std::string

class pyrosetta.rosetta.protocols.genetic_algorithm.EntityElementFactory

Bases: pyrosetta.rosetta.utility.factory.WidgetFactory_protocols_genetic_algorithm_EntityElementCreator_t, pyrosetta.rosetta.utility.SingletonBase_protocols_genetic_algorithm_EntityElementFactory_t

The %EntityElementFactory is responsible for instantiating entity elements from strings.

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__

Initialize self. See help(type(self)) for accurate signature.

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.utility.factory.WidgetFactory_protocols_genetic_algorithm_EntityElementCreator_t, : pyrosetta.rosetta.utility.factory.WidgetFactory_protocols_genetic_algorithm_EntityElementCreator_t) → pyrosetta.rosetta.utility.factory.WidgetFactory_protocols_genetic_algorithm_EntityElementCreator_t

C++: utility::factory::WidgetFactory<protocols::genetic_algorithm::EntityElementCreator>::operator=(const class utility::factory::WidgetFactory<class protocols::genetic_algorithm::EntityElementCreator> &) –> class utility::factory::WidgetFactory<class protocols::genetic_algorithm::EntityElementCreator> &

element_from_string(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElementFactory, : str) → pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement

C++: protocols::genetic_algorithm::EntityElementFactory::element_from_string(const class std::basic_string<char> &) –> class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>

factory_name(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElementFactory) → str

C++: protocols::genetic_algorithm::EntityElementFactory::factory_name() const –> std::string

factory_register(self: pyrosetta.rosetta.utility.factory.WidgetFactory_protocols_genetic_algorithm_EntityElementCreator_t, creator: protocols::genetic_algorithm::EntityElementCreator) → None

C++: utility::factory::WidgetFactory<protocols::genetic_algorithm::EntityElementCreator>::factory_register(class std::shared_ptr<class protocols::genetic_algorithm::EntityElementCreator>) –> void

get_instance() → protocols::genetic_algorithm::EntityElementFactory

C++: utility::SingletonBase<protocols::genetic_algorithm::EntityElementFactory>::get_instance() –> class protocols::genetic_algorithm::EntityElementFactory *

class pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer

Bases: pybind11_builtins.pybind11_object

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer) → None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer, : pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer) → pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer

C++: protocols::genetic_algorithm::EntityRandomizer::operator=(const class protocols::genetic_algorithm::EntityRandomizer &) –> class protocols::genetic_algorithm::EntityRandomizer &

crossover(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer, entity1: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, entity2: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → None

C++: protocols::genetic_algorithm::EntityRandomizer::crossover(class protocols::genetic_algorithm::Entity &, class protocols::genetic_algorithm::Entity &) –> void

entity_length(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer) → int

C++: protocols::genetic_algorithm::EntityRandomizer::entity_length() const –> unsigned long

entity_template(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer) → pyrosetta.rosetta.protocols.genetic_algorithm.Entity

C++: protocols::genetic_algorithm::EntityRandomizer::entity_template() const –> class std::shared_ptr<const class protocols::genetic_algorithm::Entity>

library_size(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer) → int

C++: protocols::genetic_algorithm::EntityRandomizer::library_size() const –> unsigned long

mutate(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → None

C++: protocols::genetic_algorithm::EntityRandomizer::mutate(class protocols::genetic_algorithm::Entity &) –> void

mutation_rate(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer) → float

C++: protocols::genetic_algorithm::EntityRandomizer::mutation_rate() const –> double

random_entity(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer) → pyrosetta.rosetta.protocols.genetic_algorithm.Entity

C++: protocols::genetic_algorithm::EntityRandomizer::random_entity() –> class std::shared_ptr<class protocols::genetic_algorithm::Entity>

set_entity_template(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → None

C++: protocols::genetic_algorithm::EntityRandomizer::set_entity_template(class std::shared_ptr<const class protocols::genetic_algorithm::Entity>) –> void

set_mutation_rate(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer, rate: float) → None

C++: protocols::genetic_algorithm::EntityRandomizer::set_mutation_rate(double) –> void

class pyrosetta.rosetta.protocols.genetic_algorithm.PositionSpecificRandomizer

Bases: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer

different set of choices at each position in Entity’s traits

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(self: pyrosetta.rosetta.protocols.genetic_algorithm.PositionSpecificRandomizer) → None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

append_choices(self: pyrosetta.rosetta.protocols.genetic_algorithm.PositionSpecificRandomizer, choices: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t) → None

C++: protocols::genetic_algorithm::PositionSpecificRandomizer::append_choices(const class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > > &) –> void

assign(self: pyrosetta.rosetta.protocols.genetic_algorithm.PositionSpecificRandomizer, : pyrosetta.rosetta.protocols.genetic_algorithm.PositionSpecificRandomizer) → pyrosetta.rosetta.protocols.genetic_algorithm.PositionSpecificRandomizer

C++: protocols::genetic_algorithm::PositionSpecificRandomizer::operator=(const class protocols::genetic_algorithm::PositionSpecificRandomizer &) –> class protocols::genetic_algorithm::PositionSpecificRandomizer &

choices(self: pyrosetta.rosetta.protocols.genetic_algorithm.PositionSpecificRandomizer) → pyrosetta.rosetta.utility.vector1_utility_vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_std_allocator_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t

C++: protocols::genetic_algorithm::PositionSpecificRandomizer::choices() const –> const class utility::vector1<class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > >, class std::allocator<class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > > > > &

crossover(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer, entity1: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, entity2: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → None

C++: protocols::genetic_algorithm::EntityRandomizer::crossover(class protocols::genetic_algorithm::Entity &, class protocols::genetic_algorithm::Entity &) –> void

entity_length(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer) → int

C++: protocols::genetic_algorithm::EntityRandomizer::entity_length() const –> unsigned long

entity_template(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer) → pyrosetta.rosetta.protocols.genetic_algorithm.Entity

C++: protocols::genetic_algorithm::EntityRandomizer::entity_template() const –> class std::shared_ptr<const class protocols::genetic_algorithm::Entity>

library_size(self: pyrosetta.rosetta.protocols.genetic_algorithm.PositionSpecificRandomizer) → int

C++: protocols::genetic_algorithm::PositionSpecificRandomizer::library_size() const –> unsigned long

mutate(self: pyrosetta.rosetta.protocols.genetic_algorithm.PositionSpecificRandomizer, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → None

C++: protocols::genetic_algorithm::PositionSpecificRandomizer::mutate(class protocols::genetic_algorithm::Entity &) –> void

mutation_rate(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer) → float

C++: protocols::genetic_algorithm::EntityRandomizer::mutation_rate() const –> double

random_entity(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer) → pyrosetta.rosetta.protocols.genetic_algorithm.Entity

C++: protocols::genetic_algorithm::EntityRandomizer::random_entity() –> class std::shared_ptr<class protocols::genetic_algorithm::Entity>

set_entity_template(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) → None

C++: protocols::genetic_algorithm::EntityRandomizer::set_entity_template(class std::shared_ptr<const class protocols::genetic_algorithm::Entity>) –> void

set_mutation_rate(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityRandomizer, rate: float) → None

C++: protocols::genetic_algorithm::EntityRandomizer::set_mutation_rate(double) –> void