modeler

Bindings for protocols::stepwise::modeler namespace

pyrosetta.rosetta.protocols.stepwise.modeler.add_to_pose_list(pose_list: pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t, pose: pyrosetta.rosetta.core.pose.Pose, pose_tag: str) → None

C++: protocols::stepwise::modeler::add_to_pose_list(class utility::vector1<class std::shared_ptr<class core::pose::Pose>, class std::allocator<class std::shared_ptr<class core::pose::Pose> > > &, const class core::pose::Pose &, const class std::basic_string<char> &) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.check_for_input_domain(*args, **kwargs)

Overloaded function.

  1. check_for_input_domain(pose: pyrosetta.rosetta.core.pose.Pose, partition_res: pyrosetta.rosetta.utility.vector1_unsigned_long) -> bool

C++: protocols::stepwise::modeler::check_for_input_domain(const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> bool

  1. check_for_input_domain(pose: pyrosetta.rosetta.core.pose.Pose) -> bool

C++: protocols::stepwise::modeler::check_for_input_domain(const class core::pose::Pose &) –> bool

pyrosetta.rosetta.protocols.stepwise.modeler.check_jump_to_next_residue_in_chain(*args, **kwargs)

Overloaded function.

  1. check_jump_to_next_residue_in_chain(pose: pyrosetta.rosetta.core.pose.Pose, i: int, current_element: pyrosetta.rosetta.utility.vector1_unsigned_long) -> int

C++: protocols::stepwise::modeler::check_jump_to_next_residue_in_chain(const class core::pose::Pose &, const unsigned long, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> unsigned long

  1. check_jump_to_next_residue_in_chain(pose: pyrosetta.rosetta.core.pose.Pose, i: int, current_element: pyrosetta.rosetta.utility.vector1_unsigned_long, full_model_info: pyrosetta.rosetta.core.pose.full_model_info.FullModelInfo) -> int

C++: protocols::stepwise::modeler::check_jump_to_next_residue_in_chain(const class core::pose::Pose &, const unsigned long, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class core::pose::full_model_info::FullModelInfo &) –> unsigned long

  1. check_jump_to_next_residue_in_chain(pose: pyrosetta.rosetta.core.pose.Pose, i: int, current_element: pyrosetta.rosetta.utility.vector1_unsigned_long, res_list: pyrosetta.rosetta.utility.vector1_unsigned_long, chains_in_full_model: pyrosetta.rosetta.utility.vector1_unsigned_long) -> int

C++: protocols::stepwise::modeler::check_jump_to_next_residue_in_chain(const class core::pose::Pose &, const unsigned long, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> unsigned long

pyrosetta.rosetta.protocols.stepwise.modeler.check_jump_to_previous_residue_in_chain(*args, **kwargs)

Overloaded function.

  1. check_jump_to_previous_residue_in_chain(pose: pyrosetta.rosetta.core.pose.Pose, i: int, current_element: pyrosetta.rosetta.utility.vector1_unsigned_long) -> int

C++: protocols::stepwise::modeler::check_jump_to_previous_residue_in_chain(const class core::pose::Pose &, const unsigned long, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> unsigned long

  1. check_jump_to_previous_residue_in_chain(pose: pyrosetta.rosetta.core.pose.Pose, i: int, current_element: pyrosetta.rosetta.utility.vector1_unsigned_long, full_model_info: pyrosetta.rosetta.core.pose.full_model_info.FullModelInfo) -> int

C++: protocols::stepwise::modeler::check_jump_to_previous_residue_in_chain(const class core::pose::Pose &, const unsigned long, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class core::pose::full_model_info::FullModelInfo &) –> unsigned long

  1. check_jump_to_previous_residue_in_chain(pose: pyrosetta.rosetta.core.pose.Pose, i: int, current_element: pyrosetta.rosetta.utility.vector1_unsigned_long, res_list: pyrosetta.rosetta.utility.vector1_unsigned_long, chains_in_full_model: pyrosetta.rosetta.utility.vector1_unsigned_long) -> int

C++: protocols::stepwise::modeler::check_jump_to_previous_residue_in_chain(const class core::pose::Pose &, const unsigned long, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> unsigned long

pyrosetta.rosetta.protocols.stepwise.modeler.check_scorefxn_has_constraint_terms_if_pose_has_constraints(pose: pyrosetta.rosetta.core.pose.Pose, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) → None

C++: protocols::stepwise::modeler::check_scorefxn_has_constraint_terms_if_pose_has_constraints(const class core::pose::Pose &, class std::shared_ptr<class core::scoring::ScoreFunction> &) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.constraint_set_slice(cst_set: pyrosetta.rosetta.core.scoring.constraints.ConstraintSet, slice_res: pyrosetta.rosetta.utility.vector1_unsigned_long, pose: pyrosetta.rosetta.core.pose.Pose, full_pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.core.scoring.constraints.ConstraintSet

C++: protocols::stepwise::modeler::constraint_set_slice(class std::shared_ptr<class core::scoring::constraints::ConstraintSet> &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class core::pose::Pose &, const class core::pose::Pose &) –> class std::shared_ptr<class core::scoring::constraints::ConstraintSet>

pyrosetta.rosetta.protocols.stepwise.modeler.declare_chemical_bonds_at_cutpoints(*args, **kwargs)

Overloaded function.

  1. declare_chemical_bonds_at_cutpoints(pose: pyrosetta.rosetta.core.pose.Pose, source_pose: pyrosetta.rosetta.core.pose.Pose, working_res: pyrosetta.rosetta.utility.vector1_unsigned_long, source_working_res: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::stepwise::modeler::declare_chemical_bonds_at_cutpoints(class core::pose::Pose &, const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

  1. declare_chemical_bonds_at_cutpoints(pose: pyrosetta.rosetta.core.pose.Pose, source_pose: pyrosetta.rosetta.core.pose.Pose, working_res: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::stepwise::modeler::declare_chemical_bonds_at_cutpoints(class core::pose::Pose &, const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.figure_out_moving_chain_break_res(pose: pyrosetta.rosetta.core.pose.Pose, mm: pyrosetta.rosetta.core.kinematics.MoveMap) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::figure_out_moving_chain_break_res(const class core::pose::Pose &, const class core::kinematics::MoveMap &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.figure_out_moving_chain_breaks(pose: pyrosetta.rosetta.core.pose.Pose, moving_partition_res: pyrosetta.rosetta.utility.vector1_unsigned_long, cutpoints_closed: pyrosetta.rosetta.utility.vector1_unsigned_long, five_prime_chain_breaks: pyrosetta.rosetta.utility.vector1_unsigned_long, three_prime_chain_breaks: pyrosetta.rosetta.utility.vector1_unsigned_long, chain_break_gap_sizes: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: protocols::stepwise::modeler::figure_out_moving_chain_breaks(const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.figure_out_moving_cutpoints_closed(pose: pyrosetta.rosetta.core.pose.Pose, moving_partition_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::figure_out_moving_cutpoints_closed(const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.figure_out_moving_cutpoints_closed_from_moving_res(*args, **kwargs)

Overloaded function.

  1. figure_out_moving_cutpoints_closed_from_moving_res(pose: pyrosetta.rosetta.core.pose.Pose, moving_res: int) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::figure_out_moving_cutpoints_closed_from_moving_res(const class core::pose::Pose &, const unsigned long) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

  1. figure_out_moving_cutpoints_closed_from_moving_res(pose: pyrosetta.rosetta.core.pose.Pose, moving_res_list: pyrosetta.rosetta.utility.vector1_unsigned_long) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::figure_out_moving_cutpoints_closed_from_moving_res(const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.figure_out_moving_partition_res(*args, **kwargs)

Overloaded function.

  1. figure_out_moving_partition_res(pose: pyrosetta.rosetta.core.pose.Pose, moving_res: int) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::figure_out_moving_partition_res(const class core::pose::Pose &, const unsigned long) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

  1. figure_out_moving_partition_res(pose: pyrosetta.rosetta.core.pose.Pose, moving_res_list: pyrosetta.rosetta.utility.vector1_unsigned_long) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::figure_out_moving_partition_res(const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.figure_out_moving_partition_res_for_jump(pose: pyrosetta.rosetta.core.pose.Pose, jump_nr: int) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::figure_out_moving_partition_res_for_jump(const class core::pose::Pose &, const unsigned long) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.figure_out_moving_partition_res_for_suite(pose: pyrosetta.rosetta.core.pose.Pose, moving_res: int, reference_res: int) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::figure_out_moving_partition_res_for_suite(const class core::pose::Pose &, const unsigned long, const unsigned long) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.figure_out_reference_res_for_suite(pose: pyrosetta.rosetta.core.pose.Pose, moving_res: int) → int

C++: protocols::stepwise::modeler::figure_out_reference_res_for_suite(const class core::pose::Pose &, const unsigned long) –> unsigned long

pyrosetta.rosetta.protocols.stepwise.modeler.figure_out_root_and_moving_partition_res(pose: pyrosetta.rosetta.core.pose.Pose, moving_res: int, root_partition_res: pyrosetta.rosetta.utility.vector1_unsigned_long, moving_partition_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: protocols::stepwise::modeler::figure_out_root_and_moving_partition_res(const class core::pose::Pose &, const unsigned long, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.figure_out_root_partition_res(pose: pyrosetta.rosetta.core.pose.Pose, moving_res_list: pyrosetta.rosetta.utility.vector1_unsigned_long) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::figure_out_root_partition_res(const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.find_downstream_connection_res(pose: pyrosetta.rosetta.core.pose.Pose, moving_partition_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → int

C++: protocols::stepwise::modeler::find_downstream_connection_res(const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> unsigned long

pyrosetta.rosetta.protocols.stepwise.modeler.find_jump_number_at_suite(fold_tree: pyrosetta.rosetta.core.kinematics.FoldTree, moving_suite: int) → int

C++: protocols::stepwise::modeler::find_jump_number_at_suite(const class core::kinematics::FoldTree &, const unsigned long &) –> unsigned long

pyrosetta.rosetta.protocols.stepwise.modeler.fix_protein_jump_atom(pose: pyrosetta.rosetta.core.pose.Pose, res: int, atom_name: str) → None

C++: protocols::stepwise::modeler::fix_protein_jump_atom(class core::pose::Pose &, const unsigned long, const class std::basic_string<char> &) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.fix_up_jump_atoms(pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::stepwise::modeler::fix_up_jump_atoms(class core::pose::Pose &) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.fix_up_jump_atoms_and_residue_type_variants(pose_to_fix: pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::stepwise::modeler::fix_up_jump_atoms_and_residue_type_variants(class core::pose::Pose &) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.get_all_residues(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::get_all_residues(const class core::pose::Pose &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.get_all_working_moving_res(working_parameters: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::get_all_working_moving_res(class std::shared_ptr<const class protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters>) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.get_cutpoint_closed(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::get_cutpoint_closed(const class core::pose::Pose &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.get_domain_boundary_res(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::get_domain_boundary_res(const class core::pose::Pose &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.get_domain_boundary_suites(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::get_domain_boundary_suites(const class core::pose::Pose &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.get_minimize_scorefxn(pose: pyrosetta.rosetta.core.pose.Pose, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction, options: pyrosetta.rosetta.protocols.stepwise.modeler.options.StepWiseModelerOptions) → pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::stepwise::modeler::get_minimize_scorefxn(const class core::pose::Pose &, class std::shared_ptr<const class core::scoring::ScoreFunction>, class std::shared_ptr<const class protocols::stepwise::modeler::options::StepWiseModelerOptions>) –> class std::shared_ptr<class core::scoring::ScoreFunction>

pyrosetta.rosetta.protocols.stepwise.modeler.get_moving_res_including_domain_boundaries(pose: pyrosetta.rosetta.core.pose.Pose, moving_res_list: pyrosetta.rosetta.utility.vector1_unsigned_long) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::get_moving_res_including_domain_boundaries(const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.get_partition_definition(pose: pyrosetta.rosetta.core.pose.Pose, moving_suite: int) → pyrosetta.rosetta.utility.vector1_bool

C++: protocols::stepwise::modeler::get_partition_definition(const class core::pose::Pose &, const unsigned long &) –> class utility::vector1<bool, class std::allocator<bool> >

pyrosetta.rosetta.protocols.stepwise.modeler.get_partition_definition_by_jump(pose: pyrosetta.rosetta.core.pose.Pose, jump_nr: int) → pyrosetta.rosetta.utility.vector1_bool

C++: protocols::stepwise::modeler::get_partition_definition_by_jump(const class core::pose::Pose &, const unsigned long &) –> class utility::vector1<bool, class std::allocator<bool> >

pyrosetta.rosetta.protocols.stepwise.modeler.get_unique_connection_res(pose: pyrosetta.rosetta.core.pose.Pose, moving_partition_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → int

C++: protocols::stepwise::modeler::get_unique_connection_res(const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> unsigned long

pyrosetta.rosetta.protocols.stepwise.modeler.initialize_o2prime_pack_scorefxn(scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) → pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::stepwise::modeler::initialize_o2prime_pack_scorefxn(const class std::shared_ptr<const class core::scoring::ScoreFunction> &) –> class std::shared_ptr<const class core::scoring::ScoreFunction>

pyrosetta.rosetta.protocols.stepwise.modeler.initialize_pack_scorefxn(sample_scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::stepwise::modeler::initialize_pack_scorefxn(class std::shared_ptr<const class core::scoring::ScoreFunction>, const class core::pose::Pose &) –> class std::shared_ptr<const class core::scoring::ScoreFunction>

pyrosetta.rosetta.protocols.stepwise.modeler.initialize_sample_scorefxn(scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction, pose: pyrosetta.rosetta.core.pose.Pose, options: pyrosetta.rosetta.protocols.stepwise.modeler.options.StepWiseModelerOptions) → pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::stepwise::modeler::initialize_sample_scorefxn(class std::shared_ptr<const class core::scoring::ScoreFunction>, const class core::pose::Pose &, class std::shared_ptr<const class protocols::stepwise::modeler::options::StepWiseModelerOptions>) –> class std::shared_ptr<const class core::scoring::ScoreFunction>

pyrosetta.rosetta.protocols.stepwise.modeler.is_cutpoint_closed(pose: pyrosetta.rosetta.core.pose.Pose, seq_num: int) → bool

C++: protocols::stepwise::modeler::is_cutpoint_closed(const class core::pose::Pose &, const unsigned long) –> bool

pyrosetta.rosetta.protocols.stepwise.modeler.is_protein(pose: pyrosetta.rosetta.core.pose.Pose, moving_res_list: pyrosetta.rosetta.utility.vector1_unsigned_long) → bool

C++: protocols::stepwise::modeler::is_protein(const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> bool

pyrosetta.rosetta.protocols.stepwise.modeler.look_for_unique_jump_to_moving_res(fold_tree: pyrosetta.rosetta.core.kinematics.FoldTree, i: int) → int

C++: protocols::stepwise::modeler::look_for_unique_jump_to_moving_res(const class core::kinematics::FoldTree &, const unsigned long &) –> unsigned long

pyrosetta.rosetta.protocols.stepwise.modeler.make_cut_at_moving_suite(*args, **kwargs)

Overloaded function.

  1. make_cut_at_moving_suite(pose: pyrosetta.rosetta.core.pose.Pose, moving_suite: int) -> int

C++: protocols::stepwise::modeler::make_cut_at_moving_suite(class core::pose::Pose &, const unsigned long &) –> unsigned long

  1. make_cut_at_moving_suite(fold_tree: pyrosetta.rosetta.core.kinematics.FoldTree, moving_suite: int) -> int

C++: protocols::stepwise::modeler::make_cut_at_moving_suite(class core::kinematics::FoldTree &, const unsigned long &) –> unsigned long

pyrosetta.rosetta.protocols.stepwise.modeler.make_variants_match(pose: pyrosetta.rosetta.core.pose.Pose, reference_pose: pyrosetta.rosetta.core.pose.Pose, n: int, variant_type: pyrosetta.rosetta.core.chemical.VariantType) → None

C++: protocols::stepwise::modeler::make_variants_match(class core::pose::Pose &, const class core::pose::Pose &, const unsigned long, const enum core::chemical::VariantType) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.merge_in_other_pose(pose: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, lower_merge_res: int, upper_merge_res: int, connect_residues_by_bond: bool) → None

C++: protocols::stepwise::modeler::merge_in_other_pose(class core::pose::Pose &, const class core::pose::Pose &, const unsigned long, const unsigned long, const bool) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.merge_in_other_pose_by_bond(pose: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, merge_res: int) → None

C++: protocols::stepwise::modeler::merge_in_other_pose_by_bond(class core::pose::Pose &, const class core::pose::Pose &, const unsigned long) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.merge_in_other_pose_by_jump(pose: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, lower_merge_res: int, upper_merge_res: int) → None

C++: protocols::stepwise::modeler::merge_in_other_pose_by_jump(class core::pose::Pose &, const class core::pose::Pose &, const unsigned long, const unsigned long) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.merge_two_poses(*args, **kwargs)

Overloaded function.

  1. merge_two_poses(pose: pyrosetta.rosetta.core.pose.Pose, pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, working_res1: pyrosetta.rosetta.utility.vector1_unsigned_long, working_res2: pyrosetta.rosetta.utility.vector1_unsigned_long, lower_merge_res: int, upper_merge_res: int, connect_residues_by_bond: bool) -> pyrosetta.rosetta.utility.vector1_unsigned_long
  2. merge_two_poses(pose: pyrosetta.rosetta.core.pose.Pose, pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, working_res1: pyrosetta.rosetta.utility.vector1_unsigned_long, working_res2: pyrosetta.rosetta.utility.vector1_unsigned_long, lower_merge_res: int, upper_merge_res: int, connect_residues_by_bond: bool, fix_first_pose: bool) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::merge_two_poses(class core::pose::Pose &, const class core::pose::Pose &, const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const unsigned long, const unsigned long, const bool, const bool) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.merge_two_poses_using_full_model_info(pose: pyrosetta.rosetta.core.pose.Pose, pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, lower_merge_res: int, upper_merge_res: int, connect_residues_by_bond: bool) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::merge_two_poses_using_full_model_info(class core::pose::Pose &, const class core::pose::Pose &, const class core::pose::Pose &, const unsigned long, const unsigned long, const bool) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.merge_vectors(vec1: pyrosetta.rosetta.utility.vector1_unsigned_long, vec2: pyrosetta.rosetta.utility.vector1_unsigned_long) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::merge_vectors(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.stepwise.modeler.output_boolean(*args, **kwargs)

Overloaded function.

  1. output_boolean(tag: str, boolean: bool) -> None
  2. output_boolean(tag: str, boolean: bool, outstream: pyrosetta.rosetta.std.ostream) -> None

C++: protocols::stepwise::modeler::output_boolean(const class std::basic_string<char> &, bool, class std::basic_ostream<char> &) –> void

  1. output_boolean(boolean: bool) -> None
  2. output_boolean(boolean: bool, outstream: pyrosetta.rosetta.std.ostream) -> None

C++: protocols::stepwise::modeler::output_boolean(bool, class std::basic_ostream<char> &) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.output_movemap(*args, **kwargs)

Overloaded function.

  1. output_movemap(mm: pyrosetta.rosetta.core.kinematics.MoveMap, pose: pyrosetta.rosetta.core.pose.Pose) -> None
  2. output_movemap(mm: pyrosetta.rosetta.core.kinematics.MoveMap, pose: pyrosetta.rosetta.core.pose.Pose, outstream: pyrosetta.rosetta.std.ostream) -> None

C++: protocols::stepwise::modeler::output_movemap(const class core::kinematics::MoveMap &, const class core::pose::Pose &, class std::basic_ostream<char> &) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.reroot_based_on_full_model_info(*args, **kwargs)

Overloaded function.

  1. reroot_based_on_full_model_info(pose: pyrosetta.rosetta.core.pose.Pose) -> None

C++: protocols::stepwise::modeler::reroot_based_on_full_model_info(class core::pose::Pose &) –> void

  1. reroot_based_on_full_model_info(pose: pyrosetta.rosetta.core.pose.Pose, root_partition_res: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::stepwise::modeler::reroot_based_on_full_model_info(class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.revise_root_and_moving_res(pose: pyrosetta.rosetta.core.pose.Pose, moving_res: int) → bool

C++: protocols::stepwise::modeler::revise_root_and_moving_res(class core::pose::Pose &, unsigned long &) –> bool

pyrosetta.rosetta.protocols.stepwise.modeler.revise_root_and_moving_res_list(pose: pyrosetta.rosetta.core.pose.Pose, moving_res_list: pyrosetta.rosetta.utility.vector1_unsigned_long) → bool

C++: protocols::stepwise::modeler::revise_root_and_moving_res_list(class core::pose::Pose &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> bool

pyrosetta.rosetta.protocols.stepwise.modeler.slice(sliced_out_pose: pyrosetta.rosetta.core.pose.Pose, pose: pyrosetta.rosetta.core.pose.Pose, slice_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: protocols::stepwise::modeler::slice(class core::pose::Pose &, const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.slice_out_pose(pose: pyrosetta.rosetta.core.pose.Pose, sliced_out_pose: pyrosetta.rosetta.core.pose.Pose, residues_to_delete: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: protocols::stepwise::modeler::slice_out_pose(class core::pose::Pose &, class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.split_pose(*args, **kwargs)

Overloaded function.

  1. split_pose(pose: pyrosetta.rosetta.core.pose.Pose, moving_res: int, reference_res: int) -> int

C++: protocols::stepwise::modeler::split_pose(class core::pose::Pose &, const unsigned long, const unsigned long) –> unsigned long

  1. split_pose(pose: pyrosetta.rosetta.core.pose.Pose, moving_res_list: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::stepwise::modeler::split_pose(class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.switch_focus_among_poses_randomly(*args, **kwargs)

Overloaded function.

  1. switch_focus_among_poses_randomly(pose: pyrosetta.rosetta.core.pose.Pose) -> bool
  2. switch_focus_among_poses_randomly(pose: pyrosetta.rosetta.core.pose.Pose, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) -> bool
  3. switch_focus_among_poses_randomly(pose: pyrosetta.rosetta.core.pose.Pose, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction, force_switch: bool) -> bool

C++: protocols::stepwise::modeler::switch_focus_among_poses_randomly(class core::pose::Pose &, class std::shared_ptr<const class core::scoring::ScoreFunction>, bool) –> bool

pyrosetta.rosetta.protocols.stepwise.modeler.switch_focus_to_other_pose(*args, **kwargs)

Overloaded function.

  1. switch_focus_to_other_pose(pose: pyrosetta.rosetta.core.pose.Pose, focus_pose_idx: int) -> None
  2. switch_focus_to_other_pose(pose: pyrosetta.rosetta.core.pose.Pose, focus_pose_idx: int, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) -> None

C++: protocols::stepwise::modeler::switch_focus_to_other_pose(class core::pose::Pose &, const unsigned long &, class std::shared_ptr<const class core::scoring::ScoreFunction>) –> void

pyrosetta.rosetta.protocols.stepwise.modeler.virtualize_side_chains(pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::stepwise::modeler::virtualize_side_chains(class core::pose::Pose &) –> void