protocols

• RotamerDump
• aa_composition
• abinitio
• analysis
• anchored_design
• antibody
• antibody_legacy
• backbone_moves
• backrub
• branch_angle
• canonical_sampling
• carbohydrates
• cartesian
• checkpoint
• cluster
• comparative_modeling
• constraint_generator
• constraints_additional
• contact_map
• coupled_moves
• cryst
• cyclic_peptide
• cyclic_peptide_predict
• ddG
• ddg
• denovo_design
• design_opt
• dna
• docking
• domain_assembly
• electron_density
• environment
• enzdes
• enzymatic_movers
• evaluation
• evolution
• features
• fibril
• filters
• fldsgn
• flexpack
• flexpep_docking
• floppy_tail
• flxbb
• fold_from_loops
• forge
• frag_picker
• frags
• generalized_kinematic_closure
• genetic_algorithm
• geometry
• grafting
• hbnet
• helical_bundle
• helix_capper
• hotspot_hashing
• hybridization
• hydrate
• idealize
• indel
• indexed_structure_store
• init
• interface
• jd2
• jobdist
• jumping
• kinematic_closure
• kinmatch
• ligand_docking
• loop_build
• loop_grower
• loop_modeler
• loop_modeling
• loophash
• loops
• magnesium
• make_rot_lib
• match
• matdes
• md
• mean_field
• medal
• membrane
• metal_interface
• motif_grafting
• motifs
• moves
• mpi_refinement
• multistate_design
• ncbb
• neighbor
• noesy_assign
• nonlocal
• normalmode
• optimize_weights
• pack_daemon
• parser
• pb_potential
• peptide_deriver
• pmut_scan
• pockets
• pose_length_moves
• pose_reporters
• pose_selectors
• protein_interface_design
• qsar
• rbsegment_relax
• recces
• relax
• residue_optimization
• residue_selectors
• rigid
• rna
• rosetta_scripts
• rotamer_recovery
• rpc
• sasa_scores
• scoring
• seeded_abinitio
• sewing
• sic_dock
• simple_filters
• simple_moves
• sparta
• ss_prediction
• star
• stepwise
• struct_fragment
• surface_docking
• symmetric_docking
• toolbox
• topology_broker
• trajectory
• ub_e2c
• unfolded_state_energy_calculator
• viewer
• vip
• wum

Bindings for ::protocols namespace

class pyrosetta.rosetta.protocols.LoopRebuild

Bases: pyrosetta.rosetta.protocols.moves.Mover

The loop-rebuild protocol

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.protocols.LoopRebuild, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction, Loops_in: pyrosetta.rosetta.protocols.loops.Loops) -> None
2. __init__(self: pyrosetta.rosetta.protocols.LoopRebuild, arg0: pyrosetta.rosetta.protocols.LoopRebuild) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.protocols.LoopRebuild, pose: pyrosetta.rosetta.core.pose.Pose) → None

Apply the loop-rebuild protocol to the input pose

C++: protocols::LoopRebuild::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.LoopRebuild, : pyrosetta.rosetta.protocols.LoopRebuild) → pyrosetta.rosetta.protocols.LoopRebuild

C++: protocols::LoopRebuild::operator=(const class protocols::LoopRebuild &) –> class protocols::LoopRebuild &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.LoopRebuild) → pyrosetta.rosetta.protocols.moves.Mover

Clone this object

C++: protocols::LoopRebuild::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

desired_loops(self: pyrosetta.rosetta.protocols.LoopRebuild) → int

C++: protocols::LoopRebuild::desired_loops() –> unsigned long

extended_loop(self: pyrosetta.rosetta.protocols.LoopRebuild) → bool

Are we extending the loops before running loop-rebuild?

C++: protocols::LoopRebuild::extended_loop() –> bool

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_abort_on_failed_loop(self: pyrosetta.rosetta.protocols.LoopRebuild) → bool

C++: protocols::LoopRebuild::get_abort_on_failed_loop() –> bool

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_allowed_failure_before_extend(self: pyrosetta.rosetta.protocols.LoopRebuild) → int

C++: protocols::LoopRebuild::get_allowed_failure_before_extend() –> int

get_allowed_failure_before_stop(self: pyrosetta.rosetta.protocols.LoopRebuild) → int

C++: protocols::LoopRebuild::get_allowed_failure_before_stop() –> int

get_ccd_closure_exist(self: pyrosetta.rosetta.protocols.LoopRebuild) → bool

C++: protocols::LoopRebuild::get_ccd_closure_exist() –> bool

get_chain_break_tolerance(self: pyrosetta.rosetta.protocols.LoopRebuild) → float

Gets the chainbreak tolerence, the largest the chainbreak score may be to accept a loop conformation

C++: protocols::LoopRebuild::get_chain_break_tolerance() –> double

get_combine_if_fail_exist(self: pyrosetta.rosetta.protocols.LoopRebuild) → bool

C++: protocols::LoopRebuild::get_combine_if_fail_exist() –> bool

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str

A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_desired_loops_exist(self: pyrosetta.rosetta.protocols.LoopRebuild) → bool

C++: protocols::LoopRebuild::get_desired_loops_exist() –> bool

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_loop_combine_rate(self: pyrosetta.rosetta.protocols.LoopRebuild) → float

C++: protocols::LoopRebuild::get_loop_combine_rate() –> double

get_mc(self: pyrosetta.rosetta.protocols.LoopRebuild, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.protocols.moves.MonteCarlo

Get the protocol’s Monte Carlo object

C++: protocols::LoopRebuild::get_mc(class core::pose::Pose &) –> class std::shared_ptr<class protocols::moves::MonteCarlo>

get_name(self: pyrosetta.rosetta.protocols.LoopRebuild) → str

C++: protocols::LoopRebuild::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_random_loop_flag(self: pyrosetta.rosetta.protocols.LoopRebuild) → bool

C++: protocols::LoopRebuild::get_random_loop_flag() –> bool

get_rmsd_tolerance(self: pyrosetta.rosetta.protocols.LoopRebuild) → float

Gets the RMSd tolerence, the most a loop may move during reconstruction

C++: protocols::LoopRebuild::get_rmsd_tolerance() –> double

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_success(self: pyrosetta.rosetta.protocols.LoopRebuild) → bool

Were loops successfully built?

C++: protocols::LoopRebuild::get_success() –> bool

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

loop_model(self: pyrosetta.rosetta.protocols.LoopRebuild) → bool

C++: protocols::LoopRebuild::loop_model() –> bool

name() → str

C++: protocols::moves::Mover::name() –> std::string

register_options() → None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_abort_on_failed_loop(*args, **kwargs)

Overloaded function.

1. set_abort_on_failed_loop(self: pyrosetta.rosetta.protocols.LoopRebuild) -> None
2. set_abort_on_failed_loop(self: pyrosetta.rosetta.protocols.LoopRebuild, setting: bool) -> None

C++: protocols::LoopRebuild::set_abort_on_failed_loop(bool) –> void

set_allowed_failure_before_extend(self: pyrosetta.rosetta.protocols.LoopRebuild, setting: int) → None

C++: protocols::LoopRebuild::set_allowed_failure_before_extend(int) –> void

set_allowed_failure_before_stop(self: pyrosetta.rosetta.protocols.LoopRebuild, setting: int) → None

C++: protocols::LoopRebuild::set_allowed_failure_before_stop(int) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None

////////////////////////////end Job Distributor interface////////////////////////////////////////

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None

C++: protocols::moves::Mover::set_current_tag(const class std::basic_string<char> &) –> void

set_default_mc(self: pyrosetta.rosetta.protocols.LoopRebuild, pose: pyrosetta.rosetta.core.pose.Pose) → None

setting the mc object

C++: protocols::LoopRebuild::set_default_mc(class core::pose::Pose &) –> void

set_default_settings(self: pyrosetta.rosetta.protocols.LoopRebuild) → None

sets all the standard settings for LoopBuild

C++: protocols::LoopRebuild::set_default_settings() –> void

set_extended_loop(self: pyrosetta.rosetta.protocols.LoopRebuild, val: bool) → None

Specify whether the protocol should extend the loops before running loop-rebuild

C++: protocols::LoopRebuild::set_extended_loop(bool) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_random_loop_flag(*args, **kwargs)

Overloaded function.

1. set_random_loop_flag(self: pyrosetta.rosetta.protocols.LoopRebuild) -> None
2. set_random_loop_flag(self: pyrosetta.rosetta.protocols.LoopRebuild, setting: bool) -> None

C++: protocols::LoopRebuild::set_random_loop_flag(bool) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None

C++: protocols::moves::Mover::set_type(const class std::basic_string<char> &) –> void

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(class std::basic_ostream<char> &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

C++: protocols::moves::Mover::type() const –> const std::string &

2. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

C++: protocols::moves::Mover::type(const class std::basic_string<char> &) –> void

class pyrosetta.rosetta.protocols.LoopRefine

Bases: pyrosetta.rosetta.protocols.moves.Mover

class LoopRefine for fullatom loop refinement

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.protocols.LoopRefine, Loops_in: pyrosetta.rosetta.protocols.loops.Loops) -> None
2. __init__(self: pyrosetta.rosetta.protocols.LoopRefine, arg0: pyrosetta.rosetta.protocols.LoopRefine) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.protocols.LoopRefine, pose: pyrosetta.rosetta.core.pose.Pose) → None

Apply the loop-refine protocol to the input pose

C++: protocols::LoopRefine::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.LoopRefine, : pyrosetta.rosetta.protocols.LoopRefine) → pyrosetta.rosetta.protocols.LoopRefine

C++: protocols::LoopRefine::operator=(const class protocols::LoopRefine &) –> class protocols::LoopRefine &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

Return a clone of the Mover object.

C++: protocols::moves::Mover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str

A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.LoopRefine) → str

C++: protocols::LoopRefine::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

name() → str

C++: protocols::moves::Mover::name() –> std::string

register_options() → None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None

////////////////////////////end Job Distributor interface////////////////////////////////////////

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None

C++: protocols::moves::Mover::set_current_tag(const class std::basic_string<char> &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None

C++: protocols::moves::Mover::set_type(const class std::basic_string<char> &) –> void

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(class std::basic_ostream<char> &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

C++: protocols::moves::Mover::type() const –> const std::string &

2. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

C++: protocols::moves::Mover::type(const class std::basic_string<char> &) –> void

pyrosetta.rosetta.protocols.RBSegmentRelax_main() → int

C++: protocols::RBSegmentRelax_main() –> int

pyrosetta.rosetta.protocols.ddG_main() → int

C++: protocols::ddG_main() –> int