contact_map

Bindings for protocols::contact_map namespace

class pyrosetta.rosetta.protocols.contact_map.Contact

Bases: pybind11_builtins.pybind11_object

Simple class representing a contact between two atoms

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.protocols.contact_map.Contact) -> None

doc

2. __init__(self: pyrosetta.rosetta.protocols.contact_map.Contact, arg0: pyrosetta.rosetta.protocols.contact_map.ContactPartner) -> None

doc

3. __init__(self: pyrosetta.rosetta.protocols.contact_map.Contact, p1: pyrosetta.rosetta.protocols.contact_map.ContactPartner, p2: pyrosetta.rosetta.protocols.contact_map.ContactPartner) -> None
4. __init__(self: pyrosetta.rosetta.protocols.contact_map.Contact, arg0: pyrosetta.rosetta.protocols.contact_map.Contact) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

add_distance(*args, **kwargs)

Overloaded function.

1. add_distance(self: pyrosetta.rosetta.protocols.contact_map.Contact) -> None

Adds distance to the contact

C++: protocols::contact_map::Contact::add_distance() –> void

2. add_distance(self: pyrosetta.rosetta.protocols.contact_map.Contact, distance: float) -> None

Adds distance to the contact

C++: protocols::contact_map::Contact::add_distance(double) –> void

assign(self: pyrosetta.rosetta.protocols.contact_map.Contact, : pyrosetta.rosetta.protocols.contact_map.Contact) → pyrosetta.rosetta.protocols.contact_map.Contact

C++: protocols::contact_map::Contact::operator=(const class protocols::contact_map::Contact &) –> class protocols::contact_map::Contact &

long_string_rep(*args, **kwargs)

Overloaded function.

1. long_string_rep(self: pyrosetta.rosetta.protocols.contact_map.Contact) -> str
2. long_string_rep(self: pyrosetta.rosetta.protocols.contact_map.Contact, n_poses: int) -> str

Returns string representation of the Contact including partner names

C++: protocols::contact_map::Contact::long_string_rep(unsigned long) const –> std::string

partner1(self: pyrosetta.rosetta.protocols.contact_map.Contact) → pyrosetta.rosetta.protocols.contact_map.ContactPartner

Accessor functions for private class variables

C++: protocols::contact_map::Contact::partner1() –> class protocols::contact_map::ContactPartner *

partner2(self: pyrosetta.rosetta.protocols.contact_map.Contact) → pyrosetta.rosetta.protocols.contact_map.ContactPartner

C++: protocols::contact_map::Contact::partner2() –> class protocols::contact_map::ContactPartner *

reset_count(self: pyrosetta.rosetta.protocols.contact_map.Contact) → None

Resets count to 0

C++: protocols::contact_map::Contact::reset_count() –> void

string_rep(*args, **kwargs)

Overloaded function.

1. string_rep(self: pyrosetta.rosetta.protocols.contact_map.Contact) -> str

Returns string representation of the Contact

C++: protocols::contact_map::Contact::string_rep() const –> std::string

2. string_rep(self: pyrosetta.rosetta.protocols.contact_map.Contact, n_poses: int) -> str

Returns string representation of the Contact as percentage value

C++: protocols::contact_map::Contact::string_rep(unsigned long) const –> std::string

class pyrosetta.rosetta.protocols.contact_map.ContactPartner

Bases: pybind11_builtins.pybind11_object

Simple class that holds the information on an atom involved in a contact

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.protocols.contact_map.ContactPartner) -> None

doc

2. __init__(self: pyrosetta.rosetta.protocols.contact_map.ContactPartner, arg0: int) -> None

doc

3. __init__(self: pyrosetta.rosetta.protocols.contact_map.ContactPartner, arg0: int, arg1: str) -> None

doc

4. __init__(self: pyrosetta.rosetta.protocols.contact_map.ContactPartner, seqpos: int, resname: str, aname: str) -> None
5. __init__(self: pyrosetta.rosetta.protocols.contact_map.ContactPartner, arg0: pyrosetta.rosetta.protocols.contact_map.ContactPartner) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.protocols.contact_map.ContactPartner, : pyrosetta.rosetta.protocols.contact_map.ContactPartner) → pyrosetta.rosetta.protocols.contact_map.ContactPartner

C++: protocols::contact_map::ContactPartner::operator=(const class protocols::contact_map::ContactPartner &) –> class protocols::contact_map::ContactPartner &

atomname(self: pyrosetta.rosetta.protocols.contact_map.ContactPartner) → str

C++: protocols::contact_map::ContactPartner::atomname() const –> std::string

resname(self: pyrosetta.rosetta.protocols.contact_map.ContactPartner) → str

C++: protocols::contact_map::ContactPartner::resname() const –> std::string

seqpos(self: pyrosetta.rosetta.protocols.contact_map.ContactPartner) → int

Accessor functions for private class variables

C++: protocols::contact_map::ContactPartner::seqpos() const –> unsigned long

string_rep(self: pyrosetta.rosetta.protocols.contact_map.ContactPartner) → str

Returns string representation of the ContactPartner

C++: protocols::contact_map::ContactPartner::string_rep() const –> std::string