recces

• options
• params
• sampler
• scratch

Bindings for protocols::recces namespace

pyrosetta.rosetta.protocols.recces.data_dim(*args, **kwargs)

Overloaded function.

1. data_dim(score_types: pyrosetta.rosetta.utility.vector1_core_scoring_ScoreType) -> int

C++: protocols::recces::data_dim(const class utility::vector1<enum core::scoring::ScoreType, class std::allocator<enum core::scoring::ScoreType> > &) –> unsigned long

2. data_dim() -> int

C++: protocols::recces::data_dim() –> unsigned long

pyrosetta.rosetta.protocols.recces.fill_data(data: pyrosetta.rosetta.utility.vector1_float, count: int, scores: pyrosetta.rosetta.utility.vector1_float) → None

C++: protocols::recces::fill_data(class utility::vector1<float, class std::allocator<float> > &, const unsigned long, const class utility::vector1<float, class std::allocator<float> > &) –> void

pyrosetta.rosetta.protocols.recces.gaussian_stdev(n_rsd: float, temp: float, is_bp: bool) → float

C++: protocols::recces::gaussian_stdev(const double, const double, const bool) –> double

pyrosetta.rosetta.protocols.recces.get_scoretypes() → pyrosetta.rosetta.utility.vector1_core_scoring_ScoreType

C++: protocols::recces::get_scoretypes() –> const class utility::vector1<enum core::scoring::ScoreType, class std::allocator<enum core::scoring::ScoreType> > &

pyrosetta.rosetta.protocols.recces.get_torsions(torsion_ids: pyrosetta.rosetta.utility.vector1_core_id_TorsionID, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_double

used to output torsions from pose – useful for clustering states, etc.

C++: protocols::recces::get_torsions(const class utility::vector1<class core::id::TorsionID, class std::allocator<class core::id::TorsionID> > &, const class core::pose::Pose &) –> class utility::vector1<double, class std::allocator<double> >

pyrosetta.rosetta.protocols.recces.pose_setup_from_file(options: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::recces::pose_setup_from_file(const class protocols::recces::options::RECCES_Options &) –> class std::shared_ptr<class core::pose::Pose>

pyrosetta.rosetta.protocols.recces.pose_setup_turner(seq1: str, seq2: str) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::recces::pose_setup_turner(const class std::basic_string<char> &, const class std::basic_string<char> &) –> class std::shared_ptr<class core::pose::Pose>

pyrosetta.rosetta.protocols.recces.print_base_centroid_atoms_for_rb_entropy(rsd: pyrosetta.rosetta.core.conformation.Residue, filename_xyz: str) → None

C++: protocols::recces::print_base_centroid_atoms_for_rb_entropy(const class core::conformation::Residue &, class std::basic_string<char>) –> void

pyrosetta.rosetta.protocols.recces.recces_pose_setup(options: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::recces::recces_pose_setup(const class protocols::recces::options::RECCES_Options &) –> class std::shared_ptr<class core::pose::Pose>

pyrosetta.rosetta.protocols.recces.set_gaussian_stdevs_recces_turner(sampler: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, temperature: float, pose: pyrosetta.rosetta.core.pose.Pose, rna_secstruct: pyrosetta.rosetta.core.pose.rna.RNA_SecStruct, params: pyrosetta.rosetta.protocols.recces.params.RECCES_Parameters) → None

C++: protocols::recces::set_gaussian_stdevs_recces_turner(class std::shared_ptr<class protocols::recces::sampler::MC_Comb>, const double &, const class core::pose::Pose &, const class core::pose::rna::RNA_SecStruct &, const class protocols::recces::params::RECCES_Parameters &) –> void

pyrosetta.rosetta.protocols.recces.set_gaussian_stdevs_thermal_sampler(sampler: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, temperature: float, pose: pyrosetta.rosetta.core.pose.Pose, options: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → None

C++: protocols::recces::set_gaussian_stdevs_thermal_sampler(class std::shared_ptr<class protocols::recces::sampler::MC_Sampler>, const double &, const class core::pose::Pose &, const class protocols::recces::options::RECCES_Options &) –> void

pyrosetta.rosetta.protocols.recces.set_sampler_gaussian_stdev(sampler: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, temperature: float, pose: pyrosetta.rosetta.core.pose.Pose, options: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, params: pyrosetta.rosetta.protocols.recces.params.RECCES_Parameters) → None

C++: protocols::recces::set_sampler_gaussian_stdev(class std::shared_ptr<class protocols::recces::sampler::MC_Comb>, const double &, const class core::pose::Pose &, const class protocols::recces::options::RECCES_Options &, const class protocols::recces::params::RECCES_Parameters &) –> void

pyrosetta.rosetta.protocols.recces.update_scores(*args, **kwargs)

Overloaded function.

1. update_scores(scores: pyrosetta.rosetta.utility.vector1_float, pose: pyrosetta.rosetta.core.pose.Pose, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) -> None

C++: protocols::recces::update_scores(class utility::vector1<float, class std::allocator<float> > &, class core::pose::Pose &, class std::shared_ptr<const class core::scoring::ScoreFunction>) –> void

2. update_scores(scores: pyrosetta.rosetta.utility.vector1_float, pose: pyrosetta.rosetta.core.pose.Pose, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction, scoretypes: pyrosetta.rosetta.utility.vector1_core_scoring_ScoreType) -> None

C++: protocols::recces::update_scores(class utility::vector1<float, class std::allocator<float> > &, class core::pose::Pose &, class std::shared_ptr<const class core::scoring::ScoreFunction>, const class utility::vector1<enum core::scoring::ScoreType, class std::allocator<enum core::scoring::ScoreType> > &) –> void