Index – X

x (pyrosetta.rosetta.basic.gpu.float4 property) (pyrosetta.rosetta.basic.sampling.orientations.Quaternion property) (pyrosetta.rosetta.core.io.AtomInformation property) (pyrosetta.rosetta.core.pose.rna.Atom_Bin property) (pyrosetta.rosetta.core.scoring.atomic_depth.point3d property) (pyrosetta.rosetta.core.scoring.lkball.DerivativeFinder property) (pyrosetta.rosetta.core.scoring.lkball.DerivativeFinderWadj property) (pyrosetta.rosetta.core.scoring.packstat.Circle property) (pyrosetta.rosetta.core.scoring.packstat.Event property) (pyrosetta.rosetta.core.scoring.packstat.Point property) (pyrosetta.rosetta.core.scoring.packstat.SimplePDB_Atom property) (pyrosetta.rosetta.core.scoring.PQR property) (pyrosetta.rosetta.core.scoring.sc.Atom property) (pyrosetta.rosetta.numeric.interpolation.spline.Point property) (pyrosetta.rosetta.numeric.xyzVector_double_t property) (pyrosetta.rosetta.numeric.xyzVector_float_t property) (pyrosetta.rosetta.numeric.xyzVector_int_t property) (pyrosetta.rosetta.numeric.xyzVector_unsigned_long_t property) X (pyrosetta.rosetta.protocols.comparative_modeling.features.TorsionBin attribute) x (pyrosetta.rosetta.protocols.pockets.CCluster.Cxyz property) (pyrosetta.rosetta.protocols.pockets.PCluster.Cxyz property) (pyrosetta.rosetta.protocols.sic_dock.Rose property) (pyrosetta.rosetta.protocols.simple_filters.Quat property) X (pyrosetta.rosetta.protocols.sparta.PDB_Entry property) x (pyrosetta.rosetta.RDGeom.Point3D property) x() (in module pyrosetta.rosetta.numeric.crick_equations) X() (in module pyrosetta.rosetta.ObjexxFCL.format) x() (pyrosetta.rosetta.core.fragment.BBTorsionAndAnglesSRFD method) (pyrosetta.rosetta.core.fragment.BBTorsionSRFD method) (pyrosetta.rosetta.core.fragment.IndependentBBTorsionSRFD method) (pyrosetta.rosetta.core.fragment.picking_old.vall.VallResidue method) (pyrosetta.rosetta.core.kinematics.tree.Atom method) (pyrosetta.rosetta.core.kinematics.tree.Atom_ method) (pyrosetta.rosetta.core.kinematics.tree.BondedAtom method) (pyrosetta.rosetta.core.kinematics.tree.JumpAtom method) (pyrosetta.rosetta.core.scoring.packing.Ball method) (pyrosetta.rosetta.core.sequence.Cell method) (pyrosetta.rosetta.numeric.geometry.hashing.Ball method) (pyrosetta.rosetta.numeric.interpolation.spline.SimpleInterpolator method) (pyrosetta.rosetta.numeric.Py_xyzTransform_double method) (pyrosetta.rosetta.numeric.Quaternion_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_float_t method) (pyrosetta.rosetta.numeric.xyzTriple_unsigned_long_t method) (pyrosetta.rosetta.protocols.frag_picker.VallResidue method) X() (pyrosetta.rosetta.protocols.frags.RMSVallData method) x0() (pyrosetta.rosetta.core.scoring.func.CircularHarmonicFunc method) (pyrosetta.rosetta.core.scoring.func.FlatHarmonicFunc method) (pyrosetta.rosetta.core.scoring.func.HarmonicFunc method) (pyrosetta.rosetta.core.scoring.func.MinMultiHarmonicFunc method) (pyrosetta.rosetta.core.scoring.func.SigmoidFunc method) (pyrosetta.rosetta.core.scoring.func.SquareWell2Func method) (pyrosetta.rosetta.core.scoring.func.SquareWellFunc method) (pyrosetta.rosetta.core.scoring.func.TopOutFunc method) X11Colors (class in pyrosetta.rosetta.protocols.moves) x_ (pyrosetta.rosetta.core.scoring.electron_density.poseCoord property) (pyrosetta.rosetta.numeric.geometry.hashing.Ball property) (pyrosetta.rosetta.numeric.urs_Quat property) X_ANGLE_DOF (pyrosetta.rosetta.core.conformation.symmetry.dof_type attribute) X_BUNDLE() (in module pyrosetta.rosetta.numeric.crick_equations) X_DOF (pyrosetta.rosetta.core.conformation.symmetry.dof_type attribute) x_max (pyrosetta.rosetta.protocols.hotspot_hashing.CartesianSearchPattern property) (pyrosetta.rosetta.protocols.hotspot_hashing.RotationSearchPattern property) x_min (pyrosetta.rosetta.protocols.hotspot_hashing.CartesianSearchPattern property) (pyrosetta.rosetta.protocols.hotspot_hashing.RotationSearchPattern property) x_range() (pyrosetta.rosetta.core.scoring.func.SquareWell2Func method) X_RAY_DIFFRACTION (pyrosetta.rosetta.core.io.rcsb.ExperimentalTechnique attribute) x_sampling (pyrosetta.rosetta.protocols.hotspot_hashing.CartesianSearchPattern property) (pyrosetta.rosetta.protocols.hotspot_hashing.RotationSearchPattern property) x_squared() (pyrosetta.rosetta.numeric.Quaternion_double_t method) x_values() (pyrosetta.rosetta.protocols.stepwise.sampler.rigid_body.RigidBodyStepWiseSamplerValueRange method) xalloc() (pyrosetta.rosetta.std.ios_base static method) xaxis() (pyrosetta.rosetta.numeric.HomogeneousTransform_Double method) (pyrosetta.rosetta.numeric.HomogeneousTransform_double_t method) XC_AliceBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_AntiqueWhite (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_aquamarine (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_azure (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_beige (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_bisque (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_black (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_BlanchedAlmond (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_blue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_blue1 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_blue2 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_blue3 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_blue4 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_BlueViolet (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_brown (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_burlywood (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_CadetBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_chartreuse (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_chocolate (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_coral (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_CornflowerBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_cornsilk (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_cyan (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkCyan (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkGoldenrod (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkGray (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkGreen (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkGrey (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkKhaki (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkMagenta (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkOliveGreen (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkOrange (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkOrchid (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkRed (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkSalmon (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkSeaGreen (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkSlateBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkSlateGray (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkSlateGrey (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkTurquoise (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DarkViolet (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DebianRed (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DeepPink (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DeepSkyBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DimGray (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DimGrey (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_DodgerBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_firebrick (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_first_color (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_FloralWhite (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_ForestGreen (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_gainsboro (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_GhostWhite (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_gold (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_goldenrod (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_gray (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_gray0 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_gray10 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_gray100 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_gray20 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_gray30 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_gray40 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_gray50 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_gray60 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_gray70 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_gray80 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_gray90 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_green (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_green1 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_green2 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_green3 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_green4 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_GreenYellow (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_honeydew (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_HotPink (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_IndianRed (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_ivory (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_khaki (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_last_color (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_lavender (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LavenderBlush (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LawnGreen (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LemonChiffon (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightCoral (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightCyan (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightGoldenrod (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightGoldenrodYellow (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightGray (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightGreen (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightGrey (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightPink (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightSalmon (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightSeaGreen (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightSkyBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightSlateBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightSlateGray (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightSlateGrey (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightSteelBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LightYellow (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_LimeGreen (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_linen (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_magenta (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_maroon (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_MediumAquamarine (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_MediumBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_MediumOrchid (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_MediumPurple (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_MediumSeaGreen (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_MediumSlateBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_MediumSpringGreen (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_MediumTurquoise (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_MediumVioletRed (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_MidnightBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_MintCream (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_MistyRose (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_moccasin (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_NavajoWhite (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_navy (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_NavyBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_OldLace (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_OliveDrab (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_orange (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_OrangeRed (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_orchid (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_PaleGoldenrod (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_PaleGreen (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_PaleTurquoise (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_PaleVioletRed (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_PapayaWhip (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_PeachPuff (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_peru (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_pink (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_plum (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_PowderBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_purple (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_red (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_red1 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_red2 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_red3 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_red4 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_RosyBrown (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_RoyalBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_SaddleBrown (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_salmon (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_SandyBrown (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_SeaGreen (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_seashell (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_sienna (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_SkyBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_SlateBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_SlateGray (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_SlateGrey (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_snow (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_snow1 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_snow2 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_snow3 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_snow4 (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_SpringGreen (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_SteelBlue (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_tan (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_thistle (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_tomato (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_turquoise (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_violet (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_VioletRed (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_wheat (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_white (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_WhiteSmoke (pyrosetta.rosetta.protocols.moves.X11Colors attribute)

XC_yellow (pyrosetta.rosetta.protocols.moves.X11Colors attribute) XC_YellowGreen (pyrosetta.rosetta.protocols.moves.X11Colors attribute) xd() (pyrosetta.rosetta.core.energy_methods.GoapEnergy method) xdim() (pyrosetta.rosetta.core.pose.xyzStripeHashPose method) (pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHash method) (pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_double_t method) (pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_float method) (pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_float_t method) (pyrosetta.rosetta.protocols.sic_dock.xyzStripeHashPoseWithMeta method) Xdim_ (pyrosetta.rosetta.core.scoring.packstat.Octree2D property) xdir (pyrosetta.rosetta.core.scoring.rna.chemical_shift.atomitem attribute) Xe (pyrosetta.rosetta.core.chemical.element.Elements attribute) xFactor (pyrosetta.rosetta.protocols.cluster.calibur.Clustering property) xform() (pyrosetta.rosetta.core.scoring.mhc_epitope_energy.MHCEpitopeEnergySetup method) (pyrosetta.rosetta.core.scoring.motif.ResPairMotif method) (pyrosetta.rosetta.numeric.Py_xyzTransform_double method) (pyrosetta.rosetta.numeric.xyzTransform_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_float_t method) xform_magnitude() (pyrosetta.rosetta.numeric.HomogeneousTransform_Double method) (pyrosetta.rosetta.numeric.HomogeneousTransform_double_t method) xform_pose() (in module pyrosetta.rosetta.core.fragment) (in module pyrosetta.rosetta.core.scoring.motif) (in module pyrosetta.rosetta.protocols.sic_dock) xform_pose_rev() (in module pyrosetta.rosetta.protocols.sic_dock) XformHash32 (class in pyrosetta.rosetta.numeric) XformHash64 (class in pyrosetta.rosetta.numeric) Xforms (class in pyrosetta.rosetta.numeric) XformScore (class in pyrosetta.rosetta.core.scoring.motif) XformSummary (class in pyrosetta.rosetta.core.scoring.motif) XfoxmScore (class in pyrosetta.rosetta.protocols.sic_dock) Xfrag (class in pyrosetta.rosetta.core.scoring.motif) XfragSet (class in pyrosetta.rosetta.core.scoring.motif) Xfres (class in pyrosetta.rosetta.core.scoring.motif) xhi (pyrosetta.rosetta.core.scoring.etable.ExtraQuadraticRepulsion property) XI_ATOM (pyrosetta.rosetta.core.chemical.GreekDistance attribute) xlab() (pyrosetta.rosetta.core.sequence.DP_Matrix method) xlo (pyrosetta.rosetta.core.scoring.etable.ExtraQuadraticRepulsion property) xm() (pyrosetta.rosetta.numeric.model_quality.RmsData method) xmax() (pyrosetta.rosetta.core.scoring.hbonds.Polynomial_1d method) (pyrosetta.rosetta.numeric.Polynomial_1d method) (pyrosetta.rosetta.protocols.magnesium.SampleGrid method) xmin() (pyrosetta.rosetta.core.scoring.hbonds.Polynomial_1d method) (pyrosetta.rosetta.numeric.Polynomial_1d method) (pyrosetta.rosetta.protocols.magnesium.SampleGrid method) xml_element_name() (pyrosetta.rosetta.protocols.parser.FragmentReader static method) xml_schema_attributes() (pyrosetta.rosetta.core.pack.task.operation.ProhibitResidueProperties static method) (pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypes static method) (pyrosetta.rosetta.core.pack.task.operation.ReadResfile static method) (pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents static method) (pyrosetta.rosetta.core.pack.task.operation.RestrictToResidueProperties static method) (pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypes static method) xml_schema_complex_type_generator() (pyrosetta.rosetta.protocols.enzymatic_movers.DNAMethyltransferaseMover static method) (pyrosetta.rosetta.protocols.enzymatic_movers.EnzymaticMover static method) (pyrosetta.rosetta.protocols.enzymatic_movers.GlycosyltransferaseMover static method) (pyrosetta.rosetta.protocols.enzymatic_movers.KinaseMover static method) (pyrosetta.rosetta.protocols.enzymatic_movers.NTerminalAcetyltransferaseMover static method) XMLErrorHandler (class in pyrosetta.rosetta.utility.tag) XmlObjects (class in pyrosetta.rosetta.protocols.rosetta_scripts) XMLSchemaAttribute (class in pyrosetta.rosetta.utility.tag) XMLSchemaCommonType (class in pyrosetta.rosetta.utility.tag) XMLSchemaComplexType (class in pyrosetta.rosetta.utility.tag) XMLSchemaComplexTypeGenerator (class in pyrosetta.rosetta.utility.tag) XMLSchemaDataType (class in pyrosetta.rosetta.utility.tag) XMLSchemaDefinition (class in pyrosetta.rosetta.utility.tag) XMLSchemaElement (class in pyrosetta.rosetta.utility.tag) XMLSchemaElementCategory (class in pyrosetta.rosetta.utility.tag) XMLSchemaMinOccursMaxOccurs (class in pyrosetta.rosetta.utility.tag) XMLSchemaModelGroup (class in pyrosetta.rosetta.utility.tag) XMLSchemaModelGroupType (class in pyrosetta.rosetta.utility.tag) XMLSchemaParticle (class in pyrosetta.rosetta.utility.tag) XMLSchemaRepeatableCTNode (class in pyrosetta.rosetta.utility.tag) XMLSchemaRestriction (class in pyrosetta.rosetta.utility.tag) XMLSchemaRestrictionType (class in pyrosetta.rosetta.utility.tag) XMLSchemaSimpleSubelementList (class in pyrosetta.rosetta.utility.tag) XMLSchemaSimpleSubelementList.ElementSummary (class in pyrosetta.rosetta.utility.tag) XMLSchemaSimpleSubelementList.ElementSummary.ElementType (class in pyrosetta.rosetta.utility.tag) XMLSchemaTopLevelElement (class in pyrosetta.rosetta.utility.tag) XMLSchemaType (class in pyrosetta.rosetta.utility.tag) XMLValidationOutput (class in pyrosetta.rosetta.utility.tag) XMLValidator (class in pyrosetta.rosetta.utility.tag) xn() (pyrosetta.rosetta.core.energy_methods.GoapEnergy method) xnum_points() (pyrosetta.rosetta.core.energy_methods.GridInfo method) XOR (pyrosetta.rosetta.protocols.calc_taskop_filters.Operation attribute) (pyrosetta.rosetta.protocols.filters.boolean_operations attribute) (pyrosetta.rosetta.protocols.task_operations.boolean_operations attribute) xorigin() (pyrosetta.rosetta.core.energy_methods.GridInfo method) xPercentile (pyrosetta.rosetta.protocols.cluster.calibur.Clustering property) xre() (pyrosetta.rosetta.numeric.model_quality.RmsData method) xrp() (pyrosetta.rosetta.numeric.model_quality.RmsData method) xs_boolean (pyrosetta.rosetta.utility.tag.XMLSchemaDataType attribute) xs_common (pyrosetta.rosetta.utility.tag.XMLSchemaDataType attribute) xs_custom (pyrosetta.rosetta.utility.tag.XMLSchemaDataType attribute) xs_date (pyrosetta.rosetta.utility.tag.XMLSchemaDataType attribute) xs_decimal (pyrosetta.rosetta.utility.tag.XMLSchemaDataType attribute) xs_element_is_abstract (pyrosetta.rosetta.utility.tag.XMLSchemaElementCategory attribute) xs_element_is_complex_type_w_definition (pyrosetta.rosetta.utility.tag.XMLSchemaElementCategory attribute) xs_element_is_element_reference (pyrosetta.rosetta.utility.tag.XMLSchemaElementCategory attribute) xs_element_is_type_reference (pyrosetta.rosetta.utility.tag.XMLSchemaElementCategory attribute) xs_integer (pyrosetta.rosetta.utility.tag.XMLSchemaDataType attribute) xs_model_group_name() (in module pyrosetta.rosetta.utility.tag) xs_string (pyrosetta.rosetta.utility.tag.XMLSchemaDataType attribute) xs_time (pyrosetta.rosetta.utility.tag.XMLSchemaDataType attribute) xsct_bool_cslist (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_bool_wsslist (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_canonical_res_char (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_chain_cslist (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_char (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_dssp_string (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_int_cslist (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_int_wsslist (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_minimizer_type (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_nnegative_int_cslist (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_nnegative_int_wsslist (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_non_negative_integer (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_none (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_packer_palette (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_pose_cached_task_operation (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_positive_integer (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_positive_integer_cslist (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_positive_integer_wsslist (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_real (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_real_cslist (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_real_cslist_w_ws (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_real_wsslist (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_refpose_enabled_residue_number (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_refpose_enabled_residue_number_cslist (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_residue_number (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_residue_number_cslist (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_rosetta_autobool (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_rosetta_bool (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_size_cs_pair (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_string_cslist (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_task_operation (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsct_task_operation_comma_separated_list (pyrosetta.rosetta.utility.tag.XMLSchemaCommonType attribute) xsd_architect_type_definition_w_attributes() (pyrosetta.rosetta.protocols.denovo_design.architects.DeNovoArchitectFactory static method) xsd_constraint_generator_type_definition_w_attributes() (pyrosetta.rosetta.protocols.constraint_generator.ConstraintGeneratorFactory static method) xsd_for_rosetta_scripts() (pyrosetta.rosetta.protocols.rosetta_scripts.RosettaScriptsParser static method) (pyrosetta.rosetta.protocols.rosetta_scripts.RosettaScriptsSchemaValidator static method) xsd_per_residue_probabilities_metric_type_definition_w_attributes() (in module pyrosetta.rosetta.core.simple_metrics) xsd_per_residue_real_metric_type_definition_w_attributes() (in module pyrosetta.rosetta.core.simple_metrics) xsd_per_residue_string_metric_type_definition_w_attributes() (in module pyrosetta.rosetta.core.simple_metrics) xsd_simple_metric_type_definition_w_attributes() (in module pyrosetta.rosetta.core.simple_metrics) xsd_simple_metric_type_definition_w_attributes_and_repeatable_subelements() (in module pyrosetta.rosetta.core.simple_metrics) xsd_type_definition_w_attributes() (in module pyrosetta.rosetta.basic.resource_manager.locator) (in module pyrosetta.rosetta.core.pack.palette) (in module pyrosetta.rosetta.core.select.jump_selector) (in module pyrosetta.rosetta.core.select.residue_selector) (in module pyrosetta.rosetta.protocols.chemistries) (in module pyrosetta.rosetta.protocols.features) (in module pyrosetta.rosetta.protocols.filters) (in module pyrosetta.rosetta.protocols.loops.loops_definers) (in module pyrosetta.rosetta.protocols.moves) (in module pyrosetta.rosetta.protocols.multistage_rosetta_scripts.cluster) (in module pyrosetta.rosetta.protocols.qsar.scoring_grid) (pyrosetta.rosetta.protocols.ligand_docking.rdf.RDFFunctionFactory static method) xsd_type_definition_w_attributes_and_optional_subselector() (in module pyrosetta.rosetta.core.select.jump_selector) (in module pyrosetta.rosetta.core.select.residue_selector) xsd_type_definition_w_attributes_and_optional_subselectors() (in module pyrosetta.rosetta.core.select.jump_selector) (in module pyrosetta.rosetta.core.select.residue_selector) xsd_type_definition_w_attributes_and_repeatable_subelements() (in module pyrosetta.rosetta.basic.resource_manager.locator) (in module pyrosetta.rosetta.core.pack.palette) (in module pyrosetta.rosetta.protocols.chemistries) (in module pyrosetta.rosetta.protocols.features) (in module pyrosetta.rosetta.protocols.filters) (in module pyrosetta.rosetta.protocols.moves) xsd_type_definition_w_attributes_and_single_subelement() (in module pyrosetta.rosetta.protocols.moves) xse() (pyrosetta.rosetta.numeric.model_quality.RmsData method) xsel() (pyrosetta.rosetta.core.io.rna.RDAT method) xsel_refine() (pyrosetta.rosetta.core.io.rna.RDAT method) xsmgt_all (pyrosetta.rosetta.utility.tag.XMLSchemaModelGroupType attribute) xsmgt_choice (pyrosetta.rosetta.utility.tag.XMLSchemaModelGroupType attribute) xsmgt_group (pyrosetta.rosetta.utility.tag.XMLSchemaModelGroupType attribute) xsmgt_sequence (pyrosetta.rosetta.utility.tag.XMLSchemaModelGroupType attribute) xsminmax_unbounded (pyrosetta.rosetta.utility.tag.XMLSchemaMinOccursMaxOccurs attribute) xsminmax_unspecified (pyrosetta.rosetta.utility.tag.XMLSchemaMinOccursMaxOccurs attribute) xsp() (pyrosetta.rosetta.numeric.model_quality.RmsData method) xsr_enumeration (pyrosetta.rosetta.utility.tag.XMLSchemaRestrictionType attribute) xsr_fractionDigits (pyrosetta.rosetta.utility.tag.XMLSchemaRestrictionType attribute) xsr_length (pyrosetta.rosetta.utility.tag.XMLSchemaRestrictionType attribute) xsr_maxExclusive (pyrosetta.rosetta.utility.tag.XMLSchemaRestrictionType attribute) xsr_maxInclusive (pyrosetta.rosetta.utility.tag.XMLSchemaRestrictionType attribute) xsr_maxLength (pyrosetta.rosetta.utility.tag.XMLSchemaRestrictionType attribute) xsr_minExclusive (pyrosetta.rosetta.utility.tag.XMLSchemaRestrictionType attribute) xsr_minInclusive (pyrosetta.rosetta.utility.tag.XMLSchemaRestrictionType attribute) xsr_minLength (pyrosetta.rosetta.utility.tag.XMLSchemaRestrictionType attribute) xsr_pattern (pyrosetta.rosetta.utility.tag.XMLSchemaRestrictionType attribute) xsr_totalDigits (pyrosetta.rosetta.utility.tag.XMLSchemaRestrictionType attribute) xsr_whitespace (pyrosetta.rosetta.utility.tag.XMLSchemaRestrictionType attribute) xstep() (pyrosetta.rosetta.core.energy_methods.GridInfo method) xtal_ml (pyrosetta.rosetta.core.scoring.ScoreType attribute) xtal_rfree (pyrosetta.rosetta.core.scoring.ScoreType attribute) xtal_rwork (pyrosetta.rosetta.core.scoring.ScoreType attribute) XtalMLEnergy (class in pyrosetta.rosetta.core.energy_methods) XtalMLEnergyCreator (class in pyrosetta.rosetta.core.energy_methods) xtol (pyrosetta.rosetta.numeric.nls.lm_control_struct property) xx (pyrosetta.rosetta.numeric.xyzMatrix_double_t property) (pyrosetta.rosetta.numeric.xyzMatrix_float_t property) xx() (pyrosetta.rosetta.numeric.HomogeneousTransform_Double method) (pyrosetta.rosetta.numeric.HomogeneousTransform_double_t method) (pyrosetta.rosetta.numeric.Py_xyzTransform_double method) (pyrosetta.rosetta.numeric.xyzTransform_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_float_t method) xx_init() (pyrosetta.rosetta.core.optimization.MinimizerOptions method) xy (pyrosetta.rosetta.numeric.xyzMatrix_double_t property) (pyrosetta.rosetta.numeric.xyzMatrix_float_t property) xy() (pyrosetta.rosetta.numeric.HomogeneousTransform_Double method) (pyrosetta.rosetta.numeric.HomogeneousTransform_double_t method) (pyrosetta.rosetta.numeric.Py_xyzTransform_double method) (pyrosetta.rosetta.numeric.xyzTransform_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_float_t method) xyz (pyrosetta.rosetta.core.pack.annealer.PointDwell property) (pyrosetta.rosetta.core.scoring.packstat.SimplePDB_Atom property) (pyrosetta.rosetta.core.scoring.packstat.Sphere property) (pyrosetta.rosetta.protocols.qsar.scoring_grid.ChargeAtom property) (pyrosetta.rosetta.protocols.simple_moves.AtomHashNode property) xyz() (in module pyrosetta.rosetta.numeric.crick_equations) (pyrosetta.rosetta.core.chemical.ICoorAtomID method) (pyrosetta.rosetta.core.chemical.MutableICoorRecord method) (pyrosetta.rosetta.core.conformation.Atom method) (pyrosetta.rosetta.core.conformation.AtomGraphVertexData method) (pyrosetta.rosetta.core.conformation.Conformation method) (pyrosetta.rosetta.core.conformation.orbitals.OrbitalXYZCoords method) (pyrosetta.rosetta.core.conformation.PointGraphVertexData method) (pyrosetta.rosetta.core.conformation.Residue method) (pyrosetta.rosetta.core.conformation.symmetry.MirrorSymmetricConformation method) (pyrosetta.rosetta.core.conformation.symmetry.SymmetricConformation method) (pyrosetta.rosetta.core.io.ResidueInformation method) (pyrosetta.rosetta.core.kinematics.AtomTree method) (pyrosetta.rosetta.core.kinematics.tree.Atom method) (pyrosetta.rosetta.core.kinematics.tree.Atom_ method) (pyrosetta.rosetta.core.kinematics.tree.BondedAtom method) (pyrosetta.rosetta.core.kinematics.tree.JumpAtom method) (pyrosetta.rosetta.core.pose.MiniPose method) (pyrosetta.rosetta.core.pose.Pose method) (pyrosetta.rosetta.core.pose.xyzStripeHashPose method) (pyrosetta.rosetta.core.scoring.elec.electrie.ElecAtom method) (pyrosetta.rosetta.core.scoring.etable.etrie.EtableAtom method) (pyrosetta.rosetta.core.scoring.facts.FACTSResidueInfo method) (pyrosetta.rosetta.core.scoring.func.FourPointsFunc method) (pyrosetta.rosetta.core.scoring.hbonds.graph.AtomInfo method) (pyrosetta.rosetta.core.scoring.hbonds.hbtrie.HBAtom method) (pyrosetta.rosetta.core.scoring.lkball.lkbtrie.LKBAtom method) (pyrosetta.rosetta.core.scoring.mm.mmtrie.MMEnergyTableAtom method) (pyrosetta.rosetta.core.scoring.packing.Ball method) (pyrosetta.rosetta.core.scoring.packstat.CavityBall method) (pyrosetta.rosetta.core.scoring.PDatom method) (pyrosetta.rosetta.core.scoring.PDinter method) (pyrosetta.rosetta.core.scoring.PDvertex method) (pyrosetta.rosetta.core.scoring.power_diagram.PDinter method) (pyrosetta.rosetta.core.scoring.power_diagram.PDsphere method) (pyrosetta.rosetta.core.scoring.power_diagram.PDvertex method) (pyrosetta.rosetta.core.scoring.power_diagram.SAnode method) (pyrosetta.rosetta.core.scoring.SAnode method) (pyrosetta.rosetta.core.scoring.vdwaals.VDWAtom method) (pyrosetta.rosetta.numeric.geometry.hashing.Ball method) (pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHash method) (pyrosetta.rosetta.protocols.environment.ProtectedConformation method) (pyrosetta.rosetta.protocols.md.CartesianMD method) (pyrosetta.rosetta.protocols.md.MDBase method) (pyrosetta.rosetta.protocols.normalmode.NormalMode method) xyz_ (pyrosetta.rosetta.core.scoring.facts.FACTSResidueInfo property) (pyrosetta.rosetta.core.scoring.packstat.CavityBall property) XYZ_BUNDLE() (in module pyrosetta.rosetta.numeric.crick_equations) xyz_file() (pyrosetta.rosetta.protocols.recces.options.RECCES_Options method) xyz_from_internal_coords() (in module pyrosetta.rosetta.protocols.backbone_moves.local_backbone_mover) XYZ_Func (class in pyrosetta.rosetta.core.scoring.func) xyz_gdtmm() (in module pyrosetta.rosetta.core.scoring) xyz_gdttm() (in module pyrosetta.rosetta.core.scoring) xyz_maxsub() (in module pyrosetta.rosetta.core.scoring) xyz_real() (pyrosetta.rosetta.numeric.geometry.hashing.Ball method) xyz_step() (pyrosetta.rosetta.protocols.magnesium.MgScanner method) (pyrosetta.rosetta.protocols.magnesium.SampleGrid method) xyz_target() (pyrosetta.rosetta.core.scoring.constraints.CoordinateConstraint method) (pyrosetta.rosetta.core.scoring.constraints.LocalCoordinateConstraint method) xyz_to_vec1() (in module pyrosetta.rosetta.protocols.backbone_moves.local_backbone_mover) XYZClaim (class in pyrosetta.rosetta.protocols.environment.claims) XYZEvent (class in pyrosetta.rosetta.core.conformation.signals) xyzhash_ (pyrosetta.rosetta.protocols.sic_dock.CBScore property) xyzMatrix_double_t (class in pyrosetta.rosetta.numeric) xyzMatrix_float_t (class in pyrosetta.rosetta.numeric) XYZs (class in pyrosetta.rosetta.core.scoring.constraints) xyzStripeHash (class in pyrosetta.rosetta.numeric.geometry.hashing) xyzStripeHash.const_iterator (class in pyrosetta.rosetta.numeric.geometry.hashing) xyzStripeHash.iter_base_numeric_geometry_hashing_xyzStripeHash_const_iterator_t (class in pyrosetta.rosetta.numeric.geometry.hashing) xyzStripeHashPose (class in pyrosetta.rosetta.core.pose) xyzStripeHashPose.const_iterator (class in pyrosetta.rosetta.core.pose) xyzStripeHashPose.iter_base_numeric_geometry_hashing_xyzStripeHash_const_iterator_t (class in pyrosetta.rosetta.core.pose) xyzStripeHashPoseWithMeta (class in pyrosetta.rosetta.protocols.sic_dock) xyzStripeHashWithMeta_double_t (class in pyrosetta.rosetta.numeric.geometry.hashing) xyzStripeHashWithMeta_float (class in pyrosetta.rosetta.numeric.geometry.hashing) xyzStripeHashWithMeta_float_t (class in pyrosetta.rosetta.numeric.geometry.hashing) xyzTransform_double_t (class in pyrosetta.rosetta.numeric) xyzTransform_float_t (class in pyrosetta.rosetta.numeric) xyzTriple_unsigned_long_t (class in pyrosetta.rosetta.numeric) xyzVector_double_t (class in pyrosetta.rosetta.numeric) xyzVector_float_t (class in pyrosetta.rosetta.numeric) xyzVector_int_t (class in pyrosetta.rosetta.numeric) xyzVector_unsigned_long_t (class in pyrosetta.rosetta.numeric) xz (pyrosetta.rosetta.numeric.xyzMatrix_double_t property) (pyrosetta.rosetta.numeric.xyzMatrix_float_t property) xz() (pyrosetta.rosetta.numeric.HomogeneousTransform_Double method) (pyrosetta.rosetta.numeric.HomogeneousTransform_double_t method) (pyrosetta.rosetta.numeric.Py_xyzTransform_double method) (pyrosetta.rosetta.numeric.xyzTransform_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_float_t method)