bin_transitions¶
Bindings for protocols::simple_moves::bin_transitions namespace
-
class
pyrosetta.rosetta.protocols.simple_moves.bin_transitions.
InitializeByBins
¶ Bases:
pyrosetta.rosetta.protocols.moves.Mover
A mover to set mainchain torsions by bin transition probabilities
-
__delattr__
¶ Implement delattr(self, name).
-
__dir__
() → list¶ default dir() implementation
-
__eq__
¶ Return self==value.
-
__format__
()¶ default object formatter
-
__ge__
¶ Return self>=value.
-
__getattribute__
¶ Return getattr(self, name).
-
__gt__
¶ Return self>value.
-
__hash__
¶ Return hash(self).
-
__init__
(*args, **kwargs)¶ Overloaded function.
- __init__(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.InitializeByBins) -> None
- __init__(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.InitializeByBins, arg0: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.InitializeByBins) -> None
-
__init_subclass__
()¶ This method is called when a class is subclassed.
The default implementation does nothing. It may be overridden to extend subclasses.
-
__le__
¶ Return self<=value.
-
__lt__
¶ Return self<value.
-
__ne__
¶ Return self!=value.
-
__new__
()¶ Create and return a new object. See help(type) for accurate signature.
-
__reduce__
()¶ helper for pickle
-
__reduce_ex__
()¶ helper for pickle
-
__repr__
¶ Return repr(self).
-
__setattr__
¶ Implement setattr(self, name, value).
-
__sizeof__
() → int¶ size of object in memory, in bytes
-
__str__
¶ Return str(self).
-
__subclasshook__
()¶ Abstract classes can override this to customize issubclass().
This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).
-
apply
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.InitializeByBins, pose: pyrosetta.rosetta.core.pose.Pose) → None¶ Apply the mover to a pose.
C++: protocols::simple_moves::bin_transitions::InitializeByBins::apply(class core::pose::Pose &) –> void
-
assign
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.InitializeByBins, : pyrosetta.rosetta.protocols.simple_moves.bin_transitions.InitializeByBins) → pyrosetta.rosetta.protocols.simple_moves.bin_transitions.InitializeByBins¶ C++: protocols::simple_moves::bin_transitions::InitializeByBins::operator=(const class protocols::simple_moves::bin_transitions::InitializeByBins &) –> class protocols::simple_moves::bin_transitions::InitializeByBins &
-
clear_info
(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶ Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
clear_info is called by jd2 before calling applyC++: protocols::moves::Mover::clear_info() –> void
-
clone
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.InitializeByBins) → pyrosetta.rosetta.protocols.moves.Mover¶ Clone – i.e. create a new object copying this one and return an owning pointer to the copy.
C++: protocols::simple_moves::bin_transitions::InitializeByBins::clone() const –> class std::shared_ptr<class protocols::moves::Mover>
-
create
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶ C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>
-
fresh_instance
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.InitializeByBins) → pyrosetta.rosetta.protocols.moves.Mover¶ Get a new instance of this mover (NOT copying).
C++: protocols::simple_moves::bin_transitions::InitializeByBins::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>
-
get_additional_output
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶ fpd
Mechanism by which a mover may return multiple output poses from a single input pose.C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>
-
get_current_job
(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶ C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>
-
get_current_tag
(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶ - A tag is a unique identifier used to identify structures produced
- by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.
C++: protocols::moves::Mover::get_current_tag() const –> std::string
-
get_input_pose
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶ C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>
-
get_last_move_status
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶ returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.
C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus
-
get_name
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.InitializeByBins) → str¶ C++: protocols::simple_moves::bin_transitions::InitializeByBins::get_name() const –> std::string
-
get_native_pose
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶ C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>
-
get_self_ptr
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶ C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>
-
get_self_weak_ptr
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶ C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>
-
get_type
(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶ C++: protocols::moves::Mover::get_type() const –> std::string
-
info
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t¶ non-const accessor
C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &
-
last_proposal_density_ratio
(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶ C++: protocols::moves::Mover::last_proposal_density_ratio() –> double
-
mover_name
() → str¶ C++: protocols::simple_moves::bin_transitions::InitializeByBins::mover_name() –> std::string
-
name
() → str¶ C++: protocols::moves::Mover::name() –> std::string
-
provide_xml_schema
(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶ C++: protocols::simple_moves::bin_transitions::InitializeByBins::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
-
register_options
() → None¶ Overload this static method if you access options within the mover.
These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.C++: protocols::moves::Mover::register_options() –> void
-
reinitialize_for_each_job
(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶ - Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on
- each use.
C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool
-
reinitialize_for_new_input
(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶ - Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input
- pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).
C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool
-
reset_status
(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶ resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
C++: protocols::moves::Mover::reset_status() –> void
-
set_binfile_and_load
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.InitializeByBins, name: str) → None¶ Set the bin transition probability file.
Also, loads the object.C++: protocols::simple_moves::bin_transitions::InitializeByBins::set_binfile_and_load(const class std::basic_string<char> &) –> void
-
set_current_job
(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶ ////////////////////////////end Job Distributor interface////////////////////////////////////////
C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void
-
set_current_tag
(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶ C++: protocols::moves::Mover::set_current_tag(const class std::basic_string<char> &) –> void
-
set_input_pose
(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶ setter for poses contained for rms
C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void
-
set_native_pose
(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶ setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe
C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void
-
set_residue_range
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.InitializeByBins, start: int, end: int) → None¶ - Set the residue ranges. If set to (0,0), the
- start and end of the pose are used as the range bounds.
C++: protocols::simple_moves::bin_transitions::InitializeByBins::set_residue_range(const unsigned long, const unsigned long) –> void
-
set_type
(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶ C++: protocols::moves::Mover::set_type(const class std::basic_string<char> &) –> void
-
show
(*args, **kwargs)¶ Overloaded function.
- show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
- show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None
Outputs details about the Mover, including current settings.
C++: protocols::moves::Mover::show(class std::basic_ostream<char> &) const –> void
-
test_move
(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶ - : Unit test support function. Apply one move to a given pose.
- Allows extra test specific functions to be called before applying
C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void
-
type
(*args, **kwargs)¶ Overloaded function.
- type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str
C++: protocols::moves::Mover::type() const –> const std::string &
- type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None
C++: protocols::moves::Mover::type(const class std::basic_string<char> &) –> void
-
-
class
pyrosetta.rosetta.protocols.simple_moves.bin_transitions.
PerturbByBins
¶ Bases:
pyrosetta.rosetta.protocols.moves.Mover
A mover to set mainchain torsions by bin transition probabilities
-
__delattr__
¶ Implement delattr(self, name).
-
__dir__
() → list¶ default dir() implementation
-
__eq__
¶ Return self==value.
-
__format__
()¶ default object formatter
-
__ge__
¶ Return self>=value.
-
__getattribute__
¶ Return getattr(self, name).
-
__gt__
¶ Return self>value.
-
__hash__
¶ Return hash(self).
-
__init__
(*args, **kwargs)¶ Overloaded function.
- __init__(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins) -> None
- __init__(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins, arg0: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins) -> None
-
__init_subclass__
()¶ This method is called when a class is subclassed.
The default implementation does nothing. It may be overridden to extend subclasses.
-
__le__
¶ Return self<=value.
-
__lt__
¶ Return self<value.
-
__ne__
¶ Return self!=value.
-
__new__
()¶ Create and return a new object. See help(type) for accurate signature.
-
__reduce__
()¶ helper for pickle
-
__reduce_ex__
()¶ helper for pickle
-
__repr__
¶ Return repr(self).
-
__setattr__
¶ Implement setattr(self, name, value).
-
__sizeof__
() → int¶ size of object in memory, in bytes
-
__str__
¶ Return str(self).
-
__subclasshook__
()¶ Abstract classes can override this to customize issubclass().
This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).
-
apply
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins, pose: pyrosetta.rosetta.core.pose.Pose) → None¶ Apply the mover to a pose.
C++: protocols::simple_moves::bin_transitions::PerturbByBins::apply(class core::pose::Pose &) –> void
-
assign
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins, : pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins) → pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins¶ C++: protocols::simple_moves::bin_transitions::PerturbByBins::operator=(const class protocols::simple_moves::bin_transitions::PerturbByBins &) –> class protocols::simple_moves::bin_transitions::PerturbByBins &
-
clear_info
(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶ Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
clear_info is called by jd2 before calling applyC++: protocols::moves::Mover::clear_info() –> void
-
clone
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins) → pyrosetta.rosetta.protocols.moves.Mover¶ Clone – i.e. create a new object copying this one and return an owning pointer to the copy.
C++: protocols::simple_moves::bin_transitions::PerturbByBins::clone() const –> class std::shared_ptr<class protocols::moves::Mover>
-
create
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶ C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>
-
fresh_instance
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins) → pyrosetta.rosetta.protocols.moves.Mover¶ Get a new instance of this mover (NOT copying).
C++: protocols::simple_moves::bin_transitions::PerturbByBins::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>
-
get_additional_output
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶ fpd
Mechanism by which a mover may return multiple output poses from a single input pose.C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>
-
get_current_job
(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶ C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>
-
get_current_tag
(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶ - A tag is a unique identifier used to identify structures produced
- by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.
C++: protocols::moves::Mover::get_current_tag() const –> std::string
-
get_input_pose
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶ C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>
-
get_last_move_status
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶ returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.
C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus
-
get_name
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins) → str¶ C++: protocols::simple_moves::bin_transitions::PerturbByBins::get_name() const –> std::string
-
get_native_pose
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶ C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>
-
get_self_ptr
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶ C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>
-
get_self_weak_ptr
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶ C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>
-
get_type
(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶ C++: protocols::moves::Mover::get_type() const –> std::string
-
info
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t¶ non-const accessor
C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &
-
last_proposal_density_ratio
(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶ C++: protocols::moves::Mover::last_proposal_density_ratio() –> double
-
mover_name
() → str¶ C++: protocols::simple_moves::bin_transitions::PerturbByBins::mover_name() –> std::string
-
must_switch_bins
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins) → bool¶ - Can the residue that is being perturbed stay within its own bin (in which case new mainchain
- torsions are drawn from within the bin), or must it jump to a different bin?
C++: protocols::simple_moves::bin_transitions::PerturbByBins::must_switch_bins() const –> bool
-
name
() → str¶ C++: protocols::moves::Mover::name() –> std::string
-
provide_xml_schema
(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶ C++: protocols::simple_moves::bin_transitions::PerturbByBins::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
-
register_options
() → None¶ Overload this static method if you access options within the mover.
These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.C++: protocols::moves::Mover::register_options() –> void
-
reinitialize_for_each_job
(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶ - Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on
- each use.
C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool
-
reinitialize_for_new_input
(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶ - Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input
- pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).
C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool
-
repeats
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins) → int¶ Return the number of iterations at apply time.
A value of 1 means that a single residue in the range will randomly be selected and flipped to another bin (with probabilities based on its neighbours and the bin transition probabilities. Higher values mean that this operation will be repeated. If set to 0, defaults to 1.C++: protocols::simple_moves::bin_transitions::PerturbByBins::repeats() const –> unsigned long
-
reset_status
(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶ resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
C++: protocols::moves::Mover::reset_status() –> void
-
set_binfile_and_load
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins, name: str) → None¶ Set the bin transition probability file.
Also, loads the object.C++: protocols::simple_moves::bin_transitions::PerturbByBins::set_binfile_and_load(const class std::basic_string<char> &) –> void
-
set_current_job
(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶ ////////////////////////////end Job Distributor interface////////////////////////////////////////
C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void
-
set_current_tag
(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶ C++: protocols::moves::Mover::set_current_tag(const class std::basic_string<char> &) –> void
-
set_input_pose
(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶ setter for poses contained for rms
C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void
-
set_must_switch_bins
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins, val: bool) → None¶ - Sets whether the residue that is being perturbed can stay within its own bin (in which case new mainchain
- torsions are drawn from within the bin), or whether it must jump to a different bin. True means it must jump.
C++: protocols::simple_moves::bin_transitions::PerturbByBins::set_must_switch_bins(const bool) –> void
-
set_native_pose
(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶ setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe
C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void
-
set_repeats
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins, repeats_in: int) → None¶ Set the number of repeats.
A value of 1 means that a single residue in the range will randomly be selected and flipped to another bin (with probabilities based on its neighbours and the bin transition probabilities. Higher values mean that this operation will be repeated. If set to 0, defaults to 1.C++: protocols::simple_moves::bin_transitions::PerturbByBins::set_repeats(const unsigned long) –> void
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set_residue_range
(self: pyrosetta.rosetta.protocols.simple_moves.bin_transitions.PerturbByBins, start: int, end: int) → None¶ - Set the residue ranges. If set to (0,0), the
- start and end of the pose are used as the range bounds.
C++: protocols::simple_moves::bin_transitions::PerturbByBins::set_residue_range(const unsigned long, const unsigned long) –> void
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set_type
(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶ C++: protocols::moves::Mover::set_type(const class std::basic_string<char> &) –> void
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show
(*args, **kwargs)¶ Overloaded function.
- show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
- show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None
Outputs details about the Mover, including current settings.
C++: protocols::moves::Mover::show(class std::basic_ostream<char> &) const –> void
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test_move
(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶ - : Unit test support function. Apply one move to a given pose.
- Allows extra test specific functions to be called before applying
C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void
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type
(*args, **kwargs)¶ Overloaded function.
- type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str
C++: protocols::moves::Mover::type() const –> const std::string &
- type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None
C++: protocols::moves::Mover::type(const class std::basic_string<char> &) –> void
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