pcs

Bindings for protocols::scoring::methods::pcs namespace

class pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_data_input

Bases: pybind11_builtins.pybind11_object

PCS_data_input contain all the input information for the PCS. This includes all the information from the .npc files

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_data_input) -> None
2. __init__(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_data_input, arg0: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_data_input) -> None
3. __init__(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_data_input, filenames: pyrosetta.rosetta.utility.vector1_std_string, weight: pyrosetta.rosetta.utility.vector1_double) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_data_input) → str

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_data_input, other: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_data_input) → pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_data_input

C++: protocols::scoring::methods::pcs::PCS_data_input::operator=(const class protocols::scoring::methods::pcs::PCS_data_input &) –> class protocols::scoring::methods::pcs::PCS_data_input &

get_PCS_data_input_reference(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_data_input) → pyrosetta.rosetta.std.map_std_string_protocols_scoring_methods_pcs_PCS_file_data

C++: protocols::scoring::methods::pcs::PCS_data_input::get_PCS_data_input_reference() –> class std::map<std::string, class protocols::scoring::methods::pcs::PCS_file_data, struct std::less<std::string >, class std::allocator<struct std::pair<const std::string, class protocols::scoring::methods::pcs::PCS_file_data> > > &

class pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_file_data

Bases: pybind11_builtins.pybind11_object

PCS_file_data contain all the information of a .npc file one per lanthanide.

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_file_data, arg0: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_file_data) -> None
2. __init__(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_file_data, filename: str, my_weight: float) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_file_data) → str

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_file_data, other: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_file_data) → pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_file_data

C++: protocols::scoring::methods::pcs::PCS_file_data::operator=(const class protocols::scoring::methods::pcs::PCS_file_data &) –> class protocols::scoring::methods::pcs::PCS_file_data &

get_PCS_data_line_all_reference(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_file_data) → pyrosetta.rosetta.utility.vector1_protocols_scoring_methods_pcs_PCS_line_data

C++: protocols::scoring::methods::pcs::PCS_file_data::get_PCS_data_line_all_reference() –> class utility::vector1<class protocols::scoring::methods::pcs::PCS_line_data, class std::allocator<class protocols::scoring::methods::pcs::PCS_line_data> > &

get_filename(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_file_data) → str

C++: protocols::scoring::methods::pcs::PCS_file_data::get_filename() const –> std::string

get_weight(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_file_data) → float

C++: protocols::scoring::methods::pcs::PCS_file_data::get_weight() const –> double

class pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_line_data

Bases: pybind11_builtins.pybind11_object

PCS_line_data class: hold a line of the input file information (.npc format) One PCS_line_data per line in the input file

PCS_experimental(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_line_data) → float

C++: protocols::scoring::methods::pcs::PCS_line_data::PCS_experimental() const –> double

PCS_tolerance(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_line_data) → float

C++: protocols::scoring::methods::pcs::PCS_line_data::PCS_tolerance() const –> double

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_line_data) -> None
2. __init__(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_line_data, arg0: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_line_data) -> None
3. __init__(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_line_data, residue_num: int, atom_name: str, PCS_experimental: float, PCS_tolerance: float) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_line_data) → str

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_line_data, other: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_line_data) → pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_line_data

C++: protocols::scoring::methods::pcs::PCS_line_data::operator=(const class protocols::scoring::methods::pcs::PCS_line_data &) –> class protocols::scoring::methods::pcs::PCS_line_data &

atom_name(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_line_data) → str

C++: protocols::scoring::methods::pcs::PCS_line_data::atom_name() const –> std::string

residue_num(self: pyrosetta.rosetta.protocols.scoring.methods.pcs.PCS_line_data) → int

C++: protocols::scoring::methods::pcs::PCS_line_data::residue_num() const –> unsigned long

pyrosetta.rosetta.protocols.scoring.methods.pcs.fill_A_line(A_line: pyrosetta.rosetta.utility.vector1_double, xM: float, yM: float, zM: float, x: float, y: float, z: float) → None

C++: protocols::scoring::methods::pcs::fill_A_line(class utility::vector1<double, class std::allocator<double> > &, const double, const double, const double, const double, const double, const double) –> void