fragments¶

Bindings for protocols::rna::denovo::fragments namespace

class pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments¶

Bases: pyrosetta.rosetta.protocols.rna.denovo.fragments.RNA_Fragments

__delattr__¶: Implement delattr(self, name).

__dir__() → list¶: default dir() implementation

__eq__¶: Return self==value.

__format__()¶: default object formatter

__ge__¶: Return self>=value.

__getattribute__¶: Return getattr(self, name).

__gt__¶: Return self>value.

__hash__¶: Return hash(self).

__init__(*args, **kwargs)¶

Overloaded function.

__init__(self: pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments, filename: str) -> None
__init__(self: pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments, arg0: pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments) -> None

__init_subclass__()¶

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__¶: Return self<=value.

__lt__¶: Return self<value.

__ne__¶: Return self!=value.

__new__()¶: Create and return a new object. See help(type) for accurate signature.

__reduce__()¶: helper for pickle

__reduce_ex__()¶: helper for pickle

__repr__¶: Return repr(self).

__setattr__¶: Implement setattr(self, name, value).

__sizeof__() → int¶: size of object in memory, in bytes

__str__¶: Return str(self).

__subclasshook__()¶

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply_random_fragment(self: pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments, pose: pyrosetta.rosetta.core.pose.Pose, position: int, size: int, type: int, homology_exclusion: pyrosetta.rosetta.protocols.rna.denovo.fragments.RNA_FragmentHomologyExclusion, atom_level_domain_map: pyrosetta.rosetta.protocols.toolbox.AtomLevelDomainMap) → None¶: C++: protocols::rna::denovo::fragments::FullAtomRNA_Fragments::apply_random_fragment(class core::pose::Pose &, const unsigned long, const unsigned long, const unsigned long, const class std::shared_ptr<const class protocols::rna::denovo::fragments::RNA_FragmentHomologyExclusion> &, class std::shared_ptr<const class protocols::toolbox::AtomLevelDomainMap>) const –> void

assign(self: pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments, : pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments) → pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments¶: C++: protocols::rna::denovo::fragments::FullAtomRNA_Fragments::operator=(const class protocols::rna::denovo::fragments::FullAtomRNA_Fragments &) –> class protocols::rna::denovo::fragments::FullAtomRNA_Fragments &

get_fragment_library_pointer(*args, **kwargs)¶

Overloaded function.

get_fragment_library_pointer(self: pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments, RNA_string: str, RNA_secstruct_string: str, homology_exclusion: pyrosetta.rosetta.protocols.rna.denovo.fragments.RNA_FragmentHomologyExclusion) -> protocols::rna::denovo::fragments::FragmentLibrary
get_fragment_library_pointer(self: pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments, RNA_string: str, RNA_secstruct_string: str, homology_exclusion: pyrosetta.rosetta.protocols.rna.denovo.fragments.RNA_FragmentHomologyExclusion, restriction: pyrosetta.rosetta.utility.vector1_protocols_rna_denovo_fragments_SYN_ANTI_RESTRICTION) -> protocols::rna::denovo::fragments::FragmentLibrary
get_fragment_library_pointer(self: pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments, RNA_string: str, RNA_secstruct_string: str, homology_exclusion: pyrosetta.rosetta.protocols.rna.denovo.fragments.RNA_FragmentHomologyExclusion, restriction: pyrosetta.rosetta.utility.vector1_protocols_rna_denovo_fragments_SYN_ANTI_RESTRICTION, type: int) -> protocols::rna::denovo::fragments::FragmentLibrary

C++: protocols::rna::denovo::fragments::FullAtomRNA_Fragments::get_fragment_library_pointer(const class std::basic_string<char> &, const class std::basic_string<char> &, const class std::shared_ptr<const class protocols::rna::denovo::fragments::RNA_FragmentHomologyExclusion> &, const class utility::vector1<enum protocols::rna::denovo::fragments::SYN_ANTI_RESTRICTION, class std::allocator<enum protocols::rna::denovo::fragments::SYN_ANTI_RESTRICTION> > &, const unsigned long) const –> class std::shared_ptr<class protocols::rna::denovo::fragments::FragmentLibrary>

insert_fragment(self: pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments, pose: pyrosetta.rosetta.core.pose.Pose, position: int, torsion_set: protocols::rna::denovo::fragments::TorsionSet, atom_level_domain_map: pyrosetta.rosetta.protocols.toolbox.AtomLevelDomainMap) → None¶: C++: protocols::rna::denovo::fragments::FullAtomRNA_Fragments::insert_fragment(class core::pose::Pose &, const unsigned long, const class protocols::rna::denovo::fragments::TorsionSet &, class std::shared_ptr<const class protocols::toolbox::AtomLevelDomainMap>) const –> void

is_fullatom(self: pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments) → bool¶: C++: protocols::rna::denovo::fragments::FullAtomRNA_Fragments::is_fullatom() –> bool

name(self: pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments, i: int) → str¶: C++: protocols::rna::denovo::fragments::FullAtomRNA_Fragments::name(const unsigned long &) const –> std::string

non_main_chain_sugar_coords(self: pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments, i: int, j: int, k: int) → float¶: C++: protocols::rna::denovo::fragments::FullAtomRNA_Fragments::non_main_chain_sugar_coords(const unsigned long &, const unsigned long &, const unsigned long &) const –> double

non_main_chain_sugar_coords_defined(self: pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments) → bool¶: C++: protocols::rna::denovo::fragments::FullAtomRNA_Fragments::non_main_chain_sugar_coords_defined() const –> bool

secstruct(self: pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments, i: int) → str¶: C++: protocols::rna::denovo::fragments::FullAtomRNA_Fragments::secstruct(const unsigned long &) const –> char

torsions(self: pyrosetta.rosetta.protocols.rna.denovo.fragments.FullAtomRNA_Fragments, i: int, j: int) → float¶: C++: protocols::rna::denovo::fragments::FullAtomRNA_Fragments::torsions(const unsigned long &, const unsigned long &) const –> double