ligand_options¶

Bindings for protocols::ligand_docking::ligand_options namespace

class pyrosetta.rosetta.protocols.ligand_docking.ligand_options.Interface¶

Bases: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo

For each residue is it in the interface, a mobile region or a non-mobile region?

__bool__(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo) → bool¶: Check whether the list is nonempty

__delattr__¶: Implement delattr(self, name).

__dir__() → list¶: default dir() implementation

__eq__¶: Return self==value.

__format__()¶: default object formatter

__ge__¶: Return self>=value.

__getattribute__¶: Return getattr(self, name).

__getitem__(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo, arg0: int) → protocols::ligand_docking::ligand_options::InterfaceInfo¶

__gt__¶: Return self>value.

__hash__¶: Return hash(self).

__init__(self: pyrosetta.rosetta.protocols.ligand_docking.ligand_options.Interface, num: int, info: pyrosetta.rosetta.protocols.ligand_docking.ligand_options.InterfaceInfo) → None¶

__init_subclass__()¶

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__iter__(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo) → iterator¶

__le__¶: Return self<=value.

__len__(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo) → int¶

__lt__¶: Return self<value.

__ne__¶: Return self!=value.

__new__()¶: Create and return a new object. See help(type) for accurate signature.

__reduce__()¶: helper for pickle

__reduce_ex__()¶: helper for pickle

__repr__¶: Return repr(self).

__setattr__¶: Implement setattr(self, name, value).

__setitem__(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo, arg0: int, arg1: protocols::ligand_docking::ligand_options::InterfaceInfo) → None¶

__sizeof__() → int¶: size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.protocols.ligand_docking.ligand_options.Interface) → str¶

__subclasshook__()¶

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

append(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo, arg0: protocols::ligand_docking::ligand_options::InterfaceInfo) → None¶: adds an element to the end

assign(self: pyrosetta.rosetta.protocols.ligand_docking.ligand_options.Interface, : pyrosetta.rosetta.protocols.ligand_docking.ligand_options.Interface) → pyrosetta.rosetta.protocols.ligand_docking.ligand_options.Interface¶: C++: protocols::ligand_docking::ligand_options::Interface::operator=(const class protocols::ligand_docking::ligand_options::Interface &) –> class protocols::ligand_docking::ligand_options::Interface &

back(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo) → protocols::ligand_docking::ligand_options::InterfaceInfo¶: access the last element

capacity(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo) → int¶: returns the number of elements that can be held in currently allocated storage

clear(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo) → None¶: clears the contents

enforce_minimum_length(self: pyrosetta.rosetta.protocols.ligand_docking.ligand_options.Interface, chain_begin: int, chain_end: int, window: int) → None¶: C++: protocols::ligand_docking::ligand_options::Interface::enforce_minimum_length(const unsigned long, const unsigned long, const unsigned long) –> void

erase(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo, arg0: int) → None¶: erases element at index

find_first_interface_residue(self: pyrosetta.rosetta.protocols.ligand_docking.ligand_options.Interface, chain_begin: int, chain_end: int) → int¶: C++: protocols::ligand_docking::ligand_options::Interface::find_first_interface_residue(unsigned long, const unsigned long) const –> unsigned long

find_start_of_next_interface_region(self: pyrosetta.rosetta.protocols.ligand_docking.ligand_options.Interface, start_from: int, chain_end: int) → int¶: C++: protocols::ligand_docking::ligand_options::Interface::find_start_of_next_interface_region(unsigned long, const unsigned long) const –> unsigned long

find_stop_of_this_interface_region(self: pyrosetta.rosetta.protocols.ligand_docking.ligand_options.Interface, start_from: int, chain_end: int) → int¶: C++: protocols::ligand_docking::ligand_options::Interface::find_stop_of_this_interface_region(unsigned long, const unsigned long) const –> unsigned long

front(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo) → protocols::ligand_docking::ligand_options::InterfaceInfo¶: access the first element

get_interface_residues(self: pyrosetta.rosetta.protocols.ligand_docking.ligand_options.Interface) → pyrosetta.rosetta.utility.vector1_unsigned_long¶: C++: protocols::ligand_docking::ligand_options::Interface::get_interface_residues() const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

get_near_interface_residues(self: pyrosetta.rosetta.protocols.ligand_docking.ligand_options.Interface) → pyrosetta.rosetta.utility.vector1_unsigned_long¶: C++: protocols::ligand_docking::ligand_options::Interface::get_near_interface_residues() const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

get_python_string(self: pyrosetta.rosetta.protocols.ligand_docking.ligand_options.Interface) → str¶: C++: protocols::ligand_docking::ligand_options::Interface::get_python_string() const –> std::string

l(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo) → int¶: lower index

max_size(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo) → int¶: returns the maximum possible number of elements

pop(*args, **kwargs)¶

Overloaded function.

pop(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo) -> protocols::ligand_docking::ligand_options::InterfaceInfo

remove and return last item

pop(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo, arg0: int) -> protocols::ligand_docking::ligand_options::InterfaceInfo

remove and return item at index

reserve(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo, arg0: int) → None¶: reserves storage

resize(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo, arg0: int) → None¶: changes the number of elements stored

shrink_to_fit(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo) → None¶: reduces memory usage by freeing unused memory

u(self: pyrosetta.rosetta.utility.vector1_protocols_ligand_docking_ligand_options_InterfaceInfo) → int¶: upper index

class pyrosetta.rosetta.protocols.ligand_docking.ligand_options.InterfaceInfo¶

Bases: pybind11_builtins.pybind11_object

info for each residue- is it part of the interface and if so, what ligands is it near

__delattr__¶: Implement delattr(self, name).

__dir__() → list¶: default dir() implementation

__eq__¶: Return self==value.

__format__()¶: default object formatter

__ge__¶: Return self>=value.

__getattribute__¶: Return getattr(self, name).

__gt__¶: Return self>value.

__hash__¶: Return hash(self).

__init__(*args, **kwargs)¶