components¶
Bindings for protocols::forge::components namespace
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class
pyrosetta.rosetta.protocols.forge.components.
VarLengthBuild
¶ Bases:
pyrosetta.rosetta.protocols.moves.Mover
- Component that performs a protocol for user-specified variable length
- remodeling of protein backbone segments.
- This bootstrap implementation performs centroid level loop building
- using 9,3,1-mer fragments and running a LoopMover with the Remodel ‘remodel_cen’ score function. The default loop mover is the forge RemodelLoopMover. It does not yet handle extensions or continuous replacements. This class is under heavy development, expect many changes to both API and internals.
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__delattr__
¶ Implement delattr(self, name).
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__dir__
() → list¶ default dir() implementation
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__eq__
¶ Return self==value.
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__format__
()¶ default object formatter
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__ge__
¶ Return self>=value.
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__getattribute__
¶ Return getattr(self, name).
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__gt__
¶ Return self>value.
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__hash__
¶ Return hash(self).
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__init__
(*args, **kwargs)¶ Overloaded function.
- __init__(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) -> None
- __init__(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, manager: pyrosetta.rosetta.protocols.forge.build.BuildManager) -> None
- __init__(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, manager: pyrosetta.rosetta.protocols.forge.build.BuildManager, remodel_data: pyrosetta.rosetta.protocols.forge.remodel.RemodelData) -> None
- __init__(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, arg0: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) -> None
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__init_subclass__
()¶ This method is called when a class is subclassed.
The default implementation does nothing. It may be overridden to extend subclasses.
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__le__
¶ Return self<=value.
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__lt__
¶ Return self<value.
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__ne__
¶ Return self!=value.
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__new__
()¶ Create and return a new object. See help(type) for accurate signature.
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__reduce__
()¶ helper for pickle
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__reduce_ex__
()¶ helper for pickle
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__repr__
¶ Return repr(self).
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__setattr__
¶ Implement setattr(self, name, value).
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__sizeof__
() → int¶ size of object in memory, in bytes
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__str__
¶ Return str(self).
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__subclasshook__
()¶ Abstract classes can override this to customize issubclass().
This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).
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add_rcg
(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, rcg: protocols::forge::remodel::RemodelConstraintGenerator) → None¶ C++: protocols::forge::components::VarLengthBuild::add_rcg(class std::shared_ptr<class protocols::forge::remodel::RemodelConstraintGenerator>) –> void
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add_setup_mover
(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, mover_in: pyrosetta.rosetta.protocols.moves.Mover) → None¶ C++: protocols::forge::components::VarLengthBuild::add_setup_mover(class std::shared_ptr<class protocols::moves::Mover>) –> void
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add_user_provided_mover
(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, mover_in: pyrosetta.rosetta.protocols.moves.Mover) → None¶ C++: protocols::forge::components::VarLengthBuild::add_user_provided_mover(class std::shared_ptr<class protocols::moves::Mover>) –> void
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apply
(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, pose: pyrosetta.rosetta.core.pose.Pose) → None¶ run protocol on given Pose
- if procedure successful, return Pose with modifications and a
- sealed fold tree, otherwise return Pose with modifications and the in-progress cut fold tree
- Before invoking this function it’s best to make sure
- the secondary structure in the Pose is marked via the method that you would prefer, e.g. by Dssp (protocols::jumping::Dssp), by the old Rosetta++ binning method (core::pose::set_ss_from_phipsi) or by external method such as reading in a file.
C++: protocols::forge::components::VarLengthBuild::apply(class core::pose::Pose &) –> void
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assign
(self: pyrosetta.rosetta.protocols.moves.Mover, other: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶ C++: protocols::moves::Mover::operator=(const class protocols::moves::Mover &) –> class protocols::moves::Mover &
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cache_fragments
(*args, **kwargs)¶ Overloaded function.
- cache_fragments(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) -> bool
cache fragments after picking? (default true)
- If true, will cache fragments and reuse them upon each
- apply() call instead of repicking every time.
C++: protocols::forge::components::VarLengthBuild::cache_fragments() const –> bool
- cache_fragments(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, flag: bool) -> None
cache fragments after picking?
- If true, will cache fragments and reuse them upon each
- apply() call instead of repicking every time.
C++: protocols::forge::components::VarLengthBuild::cache_fragments(const bool) –> void
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clear_fragments
(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) → None¶ clear any currently cached fragments
C++: protocols::forge::components::VarLengthBuild::clear_fragments() –> void
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clear_info
(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶ Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
clear_info is called by jd2 before calling applyC++: protocols::moves::Mover::clear_info() –> void
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clear_rcgs
(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) → None¶ C++: protocols::forge::components::VarLengthBuild::clear_rcgs() –> void
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clear_setup_movers
(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) → None¶ C++: protocols::forge::components::VarLengthBuild::clear_setup_movers() –> void
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clear_user_provided_movers
(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) → None¶ C++: protocols::forge::components::VarLengthBuild::clear_user_provided_movers() –> void
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clone
(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) → pyrosetta.rosetta.protocols.moves.Mover¶ clone this object
C++: protocols::forge::components::VarLengthBuild::clone() const –> class std::shared_ptr<class protocols::moves::Mover>
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create
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶ C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>
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fresh_instance
(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) → pyrosetta.rosetta.protocols.moves.Mover¶ create a new instance of this type of object
C++: protocols::forge::components::VarLengthBuild::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>
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get_additional_output
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶ fpd
Mechanism by which a mover may return multiple output poses from a single input pose.C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>
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get_current_job
(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶ C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>
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get_current_tag
(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶ - A tag is a unique identifier used to identify structures produced
- by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.
C++: protocols::moves::Mover::get_current_tag() const –> std::string
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get_input_pose
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶ C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>
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get_last_move_status
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶ returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.
C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus
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get_name
(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) → str¶ C++: protocols::forge::components::VarLengthBuild::get_name() const –> std::string
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get_native_pose
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶ C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>
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get_self_ptr
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶ C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>
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get_self_weak_ptr
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶ C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>
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get_type
(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶ C++: protocols::moves::Mover::get_type() const –> std::string
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ignore_cmdline_enzdes_cstfile
(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, flag: bool) → None¶ C++: protocols::forge::components::VarLengthBuild::ignore_cmdline_enzdes_cstfile(const bool) –> void
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info
(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t¶ non-const accessor
C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &
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last_proposal_density_ratio
(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶ C++: protocols::moves::Mover::last_proposal_density_ratio() –> double
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loop_mover_fold_tree_constant
(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, flag: bool) → None¶ C++: protocols::forge::components::VarLengthBuild::loop_mover_fold_tree_constant(const bool) –> void
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loop_mover_str
(*args, **kwargs)¶ Overloaded function.
- loop_mover_str(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) -> str
- the string id of the loop mover to use
- (default “RemodelLoopMover”)
- “RemodelLoopMover” for the forge RemodelLoopMover, otherwise a
- string recognized by create_loop_mover() in the “LoopMoverFactory”.
C++: protocols::forge::components::VarLengthBuild::loop_mover_str() const –> const std::string &
- loop_mover_str(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, str: str) -> None
set the loop mover to use via string
- use “RemodelLoopMover” for the forge RemodelLoopMover,
- otherwise set it to a string recognized by create_loop_mover() in the “LoopMoverFactory”.
C++: protocols::forge::components::VarLengthBuild::loop_mover_str(const class std::basic_string<char> &) –> void
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manager
(*args, **kwargs)¶ Overloaded function.
- manager(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) -> pyrosetta.rosetta.protocols.forge.build.BuildManager
build manager
C++: protocols::forge::components::VarLengthBuild::manager() const –> const class protocols::forge::build::BuildManager &
- manager(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, manager: pyrosetta.rosetta.protocols.forge.build.BuildManager) -> None
set build manager; also clears any cached fragments
C++: protocols::forge::components::VarLengthBuild::manager(const class protocols::forge::build::BuildManager &) –> void
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max_linear_chainbreak
(*args, **kwargs)¶ Overloaded function.
- max_linear_chainbreak(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) -> float
- return the highest linear chainbreak score a chainbreak can have
- and still be considered closed
default 0.07
C++: protocols::forge::components::VarLengthBuild::max_linear_chainbreak() const –> double
- max_linear_chainbreak(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, tol: float) -> None
- set the highest linear chainbreak score a chainbreak can have
- and still be considered closed
C++: protocols::forge::components::VarLengthBuild::max_linear_chainbreak(const double) –> void
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name
() → str¶ C++: protocols::moves::Mover::name() –> std::string
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new_secondary_structure_override
(*args, **kwargs)¶ Overloaded function.
- new_secondary_structure_override(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) -> str
- full sequence string with length corresponding to the new
- modified pose used to pick secondary structure biased fragments.
- IMPORTANT: This is an override! If this string is filled,
- it will be used as the string to pick secondary structure biased fragments without modification. All secondary structure settings that might be taken from the original Pose or from the BuildInstructions will be ignored. The length of this string must be equal to the length of the NEW modified pose, otherwise the protocol will stop with error – you can use BuildManager::dummy_modify() to help figure things out.
C++: protocols::forge::components::VarLengthBuild::new_secondary_structure_override() const –> const std::string &
- new_secondary_structure_override(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, str: str) -> None
- full sequence string with length corresponding to the new
- modified pose used to pick secondary structure biased fragments.
- String with length equals to the new modified pose.
- See remarks for help on how to determine this. String is allowed to be empty, in which case it will clear the setting.
- IMPORTANT: This is an override! If this string is filled,
- it will be used as the string to pick secondary structure biased fragments without modification. All secondary structure settings that might be taken from the original Pose or from the BuildInstructions will be ignored. The length of this string must be equal to the length of the NEW modified pose, otherwise the protocol will stop with error – you can use BuildManager::dummy_modify() to help figure things out.
C++: protocols::forge::components::VarLengthBuild::new_secondary_structure_override(const class std::basic_string<char> &) –> void
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new_sequence_override
(*args, **kwargs)¶ Overloaded function.
- new_sequence_override(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) -> str
- full amino acid string with length corresponding to the new
- modified pose used to pick sequence biased fragments.
- IMPORTANT: This is an override! If this string is filled,
- it will be used as the string to pick sequence biased fragments without modification. All sequence settings that might be taken from the original Pose or from the BuildInstructions will be ignored. The length of this string must be equal to the length of the NEW modified pose, otherwise the protocol will stop with error – you can use BuildManager::dummy_modify() to help figure things out.
C++: protocols::forge::components::VarLengthBuild::new_sequence_override() const –> const std::string &
- new_sequence_override(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, str: str) -> None
- full amino acid string with length corresponding to the new
- modified pose used to pick sequence biased fragments.
- String with length equals to the new modified pose.
- See remarks for help on how to determine this. String is allowed to be empty, in which case it will clear the setting.
- IMPORTANT: This is an override! If this string is filled,
- it will be used as the string to pick sequence biased fragments without modification. All sequence settings that might be taken from the original Pose or from the BuildInstructions will be ignored. The length of this string must be equal to the length of the NEW modified pose, otherwise the protocol will stop with error – you can use BuildManager::dummy_modify() to help figure things out.
C++: protocols::forge::components::VarLengthBuild::new_sequence_override(const class std::basic_string<char> &) –> void
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num_fragpick
(*args, **kwargs)¶ Overloaded function.
- num_fragpick(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) -> int
- the number of fragments to pick at each position
- (default 200)
C++: protocols::forge::components::VarLengthBuild::num_fragpick() const –> unsigned long
- num_fragpick(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, num: int) -> None
the number of fragments to pick at each position (default 200)
C++: protocols::forge::components::VarLengthBuild::num_fragpick(const unsigned long) –> void
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original_sequence
(*args, **kwargs)¶ Overloaded function.
- original_sequence(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) -> str
- full sequence string corresponding to original input pose
- used to pick sequence biased fragments; if empty, sequence bias is not used when picking fragments
C++: protocols::forge::components::VarLengthBuild::original_sequence() –> const std::string &
- original_sequence(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, seq: str) -> None
- full sequence string corresponding to original input pose
- used to pick sequence biased fragments; if empty, sequence bias is not used when picking fragments
C++: protocols::forge::components::VarLengthBuild::original_sequence(const class std::basic_string<char> &) –> void
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recover_original_on_failure
(*args, **kwargs)¶ Overloaded function.
- recover_original_on_failure(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) -> bool
- at the end of apply(), reset the Pose to the original Pose if
- mover was not successful? (default true)
C++: protocols::forge::components::VarLengthBuild::recover_original_on_failure() const –> bool
- recover_original_on_failure(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, flag: bool) -> None
- at the end of apply(), reset the Pose to the original Pose if
- mover was not successful?
C++: protocols::forge::components::VarLengthBuild::recover_original_on_failure(const bool) –> void
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register_options
() → None¶ Overload this static method if you access options within the mover.
These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.C++: protocols::moves::Mover::register_options() –> void
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reinitialize_for_each_job
(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶ - Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on
- each use.
C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool
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reinitialize_for_new_input
(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶ - Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input
- pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).
C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool
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reset_status
(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶ resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
C++: protocols::moves::Mover::reset_status() –> void
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restart_mode
(*args, **kwargs)¶ Overloaded function.
- restart_mode(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) -> bool
- Flag to turn on restart mode, in which VLB assumes that the Pose
- fed to it during apply() has already been modified by the manager. (default False)
- In restart mode, VLB only runs the manager’s dummy modify
- capability during apply() to get the mapping info.
C++: protocols::forge::components::VarLengthBuild::restart_mode() const –> bool
- restart_mode(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, flag: bool) -> None
- Flag to turn on restart mode, in which VLB assumes that the Pose
- fed to it during apply() has already been modified by the manager. (default False)
- In restart mode, VLB only runs the manager’s dummy modify
- capability during apply() to get the mapping info.
C++: protocols::forge::components::VarLengthBuild::restart_mode(const bool) –> void
-
scorefunction
(*args, **kwargs)¶ Overloaded function.
- scorefunction(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, sfx: pyrosetta.rosetta.core.scoring.ScoreFunction) -> None
set ScoreFunction used during build
C++: protocols::forge::components::VarLengthBuild::scorefunction(const class core::scoring::ScoreFunction &) –> void
- scorefunction(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, sfx: pyrosetta.rosetta.core.scoring.ScoreFunction) -> None
set ScoreFunction used during build
C++: protocols::forge::components::VarLengthBuild::scorefunction(const class std::shared_ptr<class core::scoring::ScoreFunction> &) –> void
-
set_abego
(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, abego: pyrosetta.rosetta.utility.vector1_std_string) → None¶ set abego definition for fragments
C++: protocols::forge::components::VarLengthBuild::set_abego(const class utility::vector1<class std::basic_string<char>, class std::allocator<class std::basic_string<char> > > &) –> void
-
set_current_job
(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶ ////////////////////////////end Job Distributor interface////////////////////////////////////////
C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void
-
set_current_tag
(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶ C++: protocols::moves::Mover::set_current_tag(const class std::basic_string<char> &) –> void
-
set_input_pose
(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶ setter for poses contained for rms
C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void
-
set_native_pose
(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶ setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe
C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void
-
set_type
(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶ C++: protocols::moves::Mover::set_type(const class std::basic_string<char> &) –> void
-
show
(*args, **kwargs)¶ Overloaded function.
- show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
- show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None
Outputs details about the Mover, including current settings.
C++: protocols::moves::Mover::show(class std::basic_ostream<char> &) const –> void
-
test_move
(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶ - : Unit test support function. Apply one move to a given pose.
- Allows extra test specific functions to be called before applying
C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void
-
type
(*args, **kwargs)¶ Overloaded function.
- type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str
C++: protocols::moves::Mover::type() const –> const std::string &
- type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None
C++: protocols::moves::Mover::type(const class std::basic_string<char> &) –> void
-
use_fullmer
(*args, **kwargs)¶ Overloaded function.
- use_fullmer(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) -> bool
- also use fragments spanning the entire length of a loop?
- (default false)
C++: protocols::forge::components::VarLengthBuild::use_fullmer() const –> bool
- use_fullmer(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, flag: bool) -> None
also use fragments spanning the entire length of a loop?
C++: protocols::forge::components::VarLengthBuild::use_fullmer(const bool) –> void
-
vall_memory_usage
(*args, **kwargs)¶ Overloaded function.
- vall_memory_usage(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild) -> pyrosetta.rosetta.protocols.forge.components.VLB_VallMemoryUsage.Enum
- option dictating whether to keep VallLibrary in memory or clear
- it under certain circumstances after picking fragments. (default KEEP_IN_MEMORY)
C++: protocols::forge::components::VarLengthBuild::vall_memory_usage() const –> enum protocols::forge::components::VLB_VallMemoryUsage::Enum
- vall_memory_usage(self: pyrosetta.rosetta.protocols.forge.components.VarLengthBuild, level: pyrosetta.rosetta.protocols.forge.components.VLB_VallMemoryUsage.Enum) -> None
- option dictating whether to keep VallLibrary in memory or clear
- it under certain circumstances after picking fragments.
C++: protocols::forge::components::VarLengthBuild::vall_memory_usage(const enum protocols::forge::components::VLB_VallMemoryUsage::Enum) –> void