residue_selectors¶

Bindings for protocols::denovo_design::residue_selectors namespace

class pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector¶

Bases: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Selects residues from a named segment generated by StructureArchitects

__delattr__¶: Implement delattr(self, name).

__dir__() → list¶: default dir() implementation

__eq__¶: Return self==value.

__format__()¶: default object formatter

__ge__¶: Return self>=value.

__getattribute__¶: Return getattr(self, name).

__gt__¶: Return self>value.

__hash__¶: Return hash(self).

__init__(*args, **kwargs)¶

Overloaded function.

__init__(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector) -> None
__init__(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector, segment_name: str, residues_str: str) -> None
__init__(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector, arg0: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector) -> None

__init_subclass__()¶

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__¶: Return self<=value.

__lt__¶: Return self<value.

__ne__¶: Return self!=value.

__new__()¶: Create and return a new object. See help(type) for accurate signature.

__reduce__()¶: helper for pickle

__reduce_ex__()¶: helper for pickle

__repr__¶: Return repr(self).

__setattr__¶: Implement setattr(self, name, value).

__sizeof__() → int¶: size of object in memory, in bytes

__str__¶: Return str(self).

__subclasshook__()¶

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_bool¶

“Apply” function.

Given the pose, generate a vector of bools with entries for every residue in the pose indicating whether each residue is selected (“true”) or not (“false”).

C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::apply(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

assign(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector, : pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector) → pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector¶: C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::operator=(const class protocols::denovo_design::residue_selectors::NamedSegmentSelector &) –> class protocols::denovo_design::residue_selectors::NamedSegmentSelector &

class_name() → str¶

Get the mover class name.

C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector¶

Clone operator.

Copy the current object (creating the copy on the heap) and return an owning pointer to the copy. All ResidueSelectors must implement this.

C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::clone() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

get_name(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector) → str¶

Get the mover class name.

C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::get_name() const –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None¶

XML parse.

Parse RosettaScripts tags and set up this mover.

C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶

Provide XSD information, enabling mechanical validation of input XML.

C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_residues(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector, residues_str: str) → None¶: C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::set_residues(const class std::basic_string<char> &) –> void

set_segment(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.NamedSegmentSelector, segment_name: str) → None¶: C++: protocols::denovo_design::residue_selectors::NamedSegmentSelector::set_segment(const class std::basic_string<char> &) –> void

class pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector¶

Bases: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Selects residues that are involved in strand-strand pairings

__delattr__¶: Implement delattr(self, name).

__dir__() → list¶: default dir() implementation

__eq__¶: Return self==value.

__format__()¶: default object formatter

__ge__¶: Return self>=value.

__getattribute__¶: Return getattr(self, name).

__gt__¶: Return self>value.

__hash__¶: Return hash(self).

__init__(*args, **kwargs)¶

Overloaded function.

__init__(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector) -> None
__init__(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector, arg0: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector) -> None

__init_subclass__()¶

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__¶: Return self<=value.

__lt__¶: Return self<value.

__ne__¶: Return self!=value.

__new__()¶: Create and return a new object. See help(type) for accurate signature.

__reduce__()¶: helper for pickle

__reduce_ex__()¶: helper for pickle

__repr__¶: Return repr(self).

__setattr__¶: Implement setattr(self, name, value).

__sizeof__() → int¶: size of object in memory, in bytes

__str__¶: Return str(self).

__subclasshook__()¶

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_bool¶

“Apply” function.

Given the pose, generate a vector of bools with entries for every residue in the pose indicating whether each residue is selected (“true”) or not (“false”).

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::apply(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

assign(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector, : pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector) → pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector¶: C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::operator=(const class protocols::denovo_design::residue_selectors::PairedSheetResidueSelector &) –> class protocols::denovo_design::residue_selectors::PairedSheetResidueSelector &

class_name() → str¶

Get the mover class name.

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector¶

Clone operator.

Copy the current object (creating the copy on the heap) and return an owning pointer to the copy. All ResidueSelectors must implement this.

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::clone() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

get_name(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector) → str¶

Get the mover class name.

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::get_name() const –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None¶

XML parse.

Parse RosettaScripts tags and set up this mover.

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶

Provide XSD information, enabling mechanical validation of input XML.

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_secstruct(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector, secstruct: str) → None¶

Sets secondary structure to be used in calculations

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::set_secstruct(const class std::basic_string<char> &) –> void

set_sheet_topology(self: pyrosetta.rosetta.protocols.denovo_design.residue_selectors.PairedSheetResidueSelector, sheet_topology: str) → None¶

Sets sheet topology to be filtered

C++: protocols::denovo_design::residue_selectors::PairedSheetResidueSelector::set_sheet_topology(const class std::basic_string<char> &) –> void