residue_selector

Bindings for protocols::antibody::residue_selector namespace

class pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector

Bases: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

A simple selector to select residues of particular antibody regions.

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

  1. __init__(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector) -> None
  2. __init__(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector, ab_info: pyrosetta.rosetta.protocols.antibody.AntibodyInfo) -> None
  3. __init__(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector, ab_info: pyrosetta.rosetta.protocols.antibody.AntibodyInfo, region: pyrosetta.rosetta.protocols.antibody.AntibodyRegionEnum) -> None
  4. __init__(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector, arg0: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector) -> None
__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_bool

“Apply” function.

Given the pose, generate a vector of bools with entries for every residue in the pose indicating whether each residue is selected (“true”) or not (“false”).

C++: protocols::antibody::residue_selector::AntibodyRegionSelector::apply(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

assign(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector, : pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector) → pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector

C++: protocols::antibody::residue_selector::AntibodyRegionSelector::operator=(const class protocols::antibody::residue_selector::AntibodyRegionSelector &) –> class protocols::antibody::residue_selector::AntibodyRegionSelector &

class_name() → str

Get the mover class name.

C++: protocols::antibody::residue_selector::AntibodyRegionSelector::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Clone operator.

Copy the current object (creating the copy on the heap) and return an owning pointer to the copy. All ResidueSelectors must implement this.

C++: protocols::antibody::residue_selector::AntibodyRegionSelector::clone() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

get_name(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector) → str

Get the mover class name.

C++: protocols::antibody::residue_selector::AntibodyRegionSelector::get_name() const –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None

XML parse.

Parse RosettaScripts tags and set up this mover.

C++: protocols::antibody::residue_selector::AntibodyRegionSelector::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

Provide XSD information, enabling mechanical validation of input XML.

C++: protocols::antibody::residue_selector::AntibodyRegionSelector::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_ab_info(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector, ab_info: pyrosetta.rosetta.protocols.antibody.AntibodyInfo) → None

C++: protocols::antibody::residue_selector::AntibodyRegionSelector::set_ab_info(class std::shared_ptr<const class protocols::antibody::AntibodyInfo>) –> void

set_region(self: pyrosetta.rosetta.protocols.antibody.residue_selector.AntibodyRegionSelector, region: pyrosetta.rosetta.protocols.antibody.AntibodyRegionEnum) → None

C++: protocols::antibody::residue_selector::AntibodyRegionSelector::set_region(enum protocols::antibody::AntibodyRegionEnum) –> void

class pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector

Bases: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Select CDR residues.

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

  1. __init__(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector) -> None
  2. __init__(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, ab_info: pyrosetta.rosetta.protocols.antibody.AntibodyInfo) -> None
  3. __init__(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, ab_info: pyrosetta.rosetta.protocols.antibody.AntibodyInfo, cdrs: pyrosetta.rosetta.utility.vector1_protocols_antibody_CDRNameEnum) -> None
  4. __init__(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, ab_info: pyrosetta.rosetta.protocols.antibody.AntibodyInfo, cdrs: pyrosetta.rosetta.utility.vector1_bool) -> None
  5. __init__(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, arg0: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector) -> None
__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_bool

“Apply” function.

Given the pose, generate a vector of bools with entries for every residue in the pose indicating whether each residue is selected (“true”) or not (“false”).

C++: protocols::antibody::residue_selector::CDRResidueSelector::apply(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

assign(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, : pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector) → pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector

C++: protocols::antibody::residue_selector::CDRResidueSelector::operator=(const class protocols::antibody::residue_selector::CDRResidueSelector &) –> class protocols::antibody::residue_selector::CDRResidueSelector &

class_name() → str

Get the mover class name.

C++: protocols::antibody::residue_selector::CDRResidueSelector::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Clone operator.

Copy the current object (creating the copy on the heap) and return an owning pointer to the copy. All ResidueSelectors must implement this.

C++: protocols::antibody::residue_selector::CDRResidueSelector::clone() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

get_name(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector) → str

Get the mover class name.

C++: protocols::antibody::residue_selector::CDRResidueSelector::get_name() const –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None

XML parse.

Parse RosettaScripts tags and set up this mover.

C++: protocols::antibody::residue_selector::CDRResidueSelector::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

Provide XSD information, enabling mechanical validation of input XML.

C++: protocols::antibody::residue_selector::CDRResidueSelector::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_ab_info(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, ab_info: pyrosetta.rosetta.protocols.antibody.AntibodyInfo) → None

C++: protocols::antibody::residue_selector::CDRResidueSelector::set_ab_info(class std::shared_ptr<const class protocols::antibody::AntibodyInfo>) –> void

set_cdrs(*args, **kwargs)

Overloaded function.

  1. set_cdrs(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, cdrs: pyrosetta.rosetta.utility.vector1_bool) -> None

C++: protocols::antibody::residue_selector::CDRResidueSelector::set_cdrs(class utility::vector1<bool, class std::allocator<bool> >) –> void

  1. set_cdrs(self: pyrosetta.rosetta.protocols.antibody.residue_selector.CDRResidueSelector, cdrs: pyrosetta.rosetta.utility.vector1_protocols_antibody_CDRNameEnum) -> None

C++: protocols::antibody::residue_selector::CDRResidueSelector::set_cdrs(class utility::vector1<enum protocols::antibody::CDRNameEnum, class std::allocator<enum protocols::antibody::CDRNameEnum> >) –> void