Day 1 Materials
Google colab: Google Colab
Colab exercise notebook: Exercise 1
Useful youtube video! Programming with Mosh
Try it yourself: Exercise 2
Day 2 Materials
Conditionals Colab: Conditionals
Plotting Colab: Plotting
Day 3 Materials
Colab: Loops
Colab: Python Crash Course (simple plotting on bottom!)
Day 4 Materials
Colab: Data Structures
PyMol worksheet: Worksheet PDF
Day 5 Materials
Colab Follow-Along: Functions!
Colab Exercises: Function exercises
Day 6 Materials
PyRosetta Notebook Pose Basics
Worksheet PDF: Day 1 Workhseet
Day 7 Materials
Review Exercises: Colab Notebook
PyRosetta Notebook: Score Function Basics
Worksheet PDF: Score Function Worksheet
Monte Carlo Follow-Along: Colab Notebook
Day 8 Materials
MC exercises Colab Notebook
Folding a protein with MC: Colab Notebook
Fast Relax: Colab Workbook
Day 9 Materials
FastRelax Code Colab Notebook
MC exercises: Colab Notebook
Final Project: Worksheet
Please download the worksheet, and then edit that word document!
Day 10 Materials
Post-Course Survey: Form link
-- General Resources --
We've loved having you guys in our class. We hope you'll gain an appreciation for those tiny proteins, carbs, nucleotides, and lipids in our body. Here is the link to all the lectures we've shown, please feel free to look over them and email us questions!
Lecture link: ppts
Most science courses are available for free on Khan Academy. The teachers are great, and you can go at your own pace! There are videos, articles, and exercises for you to see how much you've learned.
Protein Biology on Khan Academy (free) Video+Exercises
General chemistry on Khan Academy (free) Videos
More protein science! Videos + Exercises
Physics on Khan Academy: Videos
Coding practices! Links to videos and exercises. Coding Help Homepage
Really nice coding video! Youtube link
Get in touch with us at: scanner1@jh.edu and ftalib1@jh.edu