motif

Bindings for core::scoring::motif namespace

pyrosetta.rosetta.core.scoring.motif.HACK_dump_helices(*args, **kwargs)

Overloaded function.

1. HACK_dump_helices(pose: pyrosetta.rosetta.core.pose.Pose, tag: str, nres: int) -> int
2. HACK_dump_helices(pose: pyrosetta.rosetta.core.pose.Pose, tag: str, nres: int, minlen: int) -> int

C++: core::scoring::motif::HACK_dump_helices(const class core::pose::Pose &, class std::basic_string<char>, int, int) –> int

pyrosetta.rosetta.core.scoring.motif.HACK_dump_helix(pose: pyrosetta.rosetta.core.pose.Pose, fname: str, beg: int, end: int) → None

C++: core::scoring::motif::HACK_dump_helix(const class core::pose::Pose &, class std::basic_string<char>, int, int) –> void

pyrosetta.rosetta.core.scoring.motif.aa_trustworthiness(aa: str) → float

C++: core::scoring::motif::aa_trustworthiness(char) –> double

pyrosetta.rosetta.core.scoring.motif.align_motif_pose(pose: pyrosetta.rosetta.core.pose.Pose, paln1: pyrosetta.rosetta.core.pose.Pose, ir: int, paln2: pyrosetta.rosetta.core.pose.Pose, jr: int, type: pyrosetta.rosetta.core.scoring.motif.RPM_Type) → float

C++: core::scoring::motif::align_motif_pose(class core::pose::Pose &, const class core::pose::Pose &, const unsigned long &, const class core::pose::Pose &, const unsigned long &, const enum core::scoring::motif::RPM_Type &) –> double

pyrosetta.rosetta.core.scoring.motif.align_motif_pose_break(pose: pyrosetta.rosetta.core.pose.Pose, paln1: pyrosetta.rosetta.core.pose.Pose, ir: int, paln2: pyrosetta.rosetta.core.pose.Pose, jr: int, type: pyrosetta.rosetta.core.scoring.motif.RPM_Type) → float

C++: core::scoring::motif::align_motif_pose_break(class core::pose::Pose &, const class core::pose::Pose &, const unsigned long &, const class core::pose::Pose &, const unsigned long &, const enum core::scoring::motif::RPM_Type &) –> double

pyrosetta.rosetta.core.scoring.motif.align_motif_pose_by_one_frame(pose: pyrosetta.rosetta.core.pose.Pose, paln1: pyrosetta.rosetta.core.pose.Pose, ir: int, paln2: pyrosetta.rosetta.core.pose.Pose, jr: int, type: pyrosetta.rosetta.core.scoring.motif.RPM_Type) → float

C++: core::scoring::motif::align_motif_pose_by_one_frame(class core::pose::Pose &, const class core::pose::Pose &, const unsigned long &, const class core::pose::Pose &, const unsigned long &, const enum core::scoring::motif::RPM_Type &) –> double

pyrosetta.rosetta.core.scoring.motif.align_motif_pose_super(pose: pyrosetta.rosetta.core.pose.Pose, paln1: pyrosetta.rosetta.core.pose.Pose, ir: int, paln2: pyrosetta.rosetta.core.pose.Pose, jr: int, type: pyrosetta.rosetta.core.scoring.motif.RPM_Type) → float

C++: core::scoring::motif::align_motif_pose_super(class core::pose::Pose &, const class core::pose::Pose &, const unsigned long &, const class core::pose::Pose &, const unsigned long &, const enum core::scoring::motif::RPM_Type &) –> double

pyrosetta.rosetta.core.scoring.motif.angle_distance(a: float, b: float) → float

C++: core::scoring::motif::angle_distance(const double &, const double &) –> double

pyrosetta.rosetta.core.scoring.motif.filter_motifs(*args, **kwargs)

Overloaded function.

1. filter_motifs(motifs_in: pyrosetta.rosetta.core.scoring.motif.ResPairMotifs, motifs_out: pyrosetta.rosetta.core.scoring.motif.ResPairMotifs) -> None

C++: core::scoring::motif::filter_motifs(const class core::scoring::motif::ResPairMotifs &, class core::scoring::motif::ResPairMotifs &) –> void

2. filter_motifs(motifs: pyrosetta.rosetta.core.scoring.motif.ResPairMotifs) -> None

C++: core::scoring::motif::filter_motifs(class core::scoring::motif::ResPairMotifs &) –> void

pyrosetta.rosetta.core.scoring.motif.get_bins(c: float, a: float) → pyrosetta.rosetta.utility.fixedsizearray1_double_6_t

C++: core::scoring::motif::get_bins(double, double) –> class utility::fixedsizearray1<double, 6>

pyrosetta.rosetta.core.scoring.motif.get_motif_atom_mask(*args, **kwargs)

Overloaded function.

1. get_motif_atom_mask(motif_pose: pyrosetta.rosetta.core.pose.Pose, type: pyrosetta.rosetta.core.scoring.motif.RPM_Type) -> pyrosetta.rosetta.core.id.AtomID_Map_bool_t
2. get_motif_atom_mask(motif_pose: pyrosetta.rosetta.core.pose.Pose, type: pyrosetta.rosetta.core.scoring.motif.RPM_Type, with_Hpol: bool) -> pyrosetta.rosetta.core.id.AtomID_Map_bool_t

C++: core::scoring::motif::get_motif_atom_mask(const class core::pose::Pose &, const enum core::scoring::motif::RPM_Type &, bool) –> class core::id::AtomID_Map<bool>

pyrosetta.rosetta.core.scoring.motif.get_nbrs(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_double

C++: core::scoring::motif::get_nbrs(const class core::pose::Pose &) –> class utility::vector1<double, class std::allocator<double> >

pyrosetta.rosetta.core.scoring.motif.get_residue_pair_rt6(*args, **kwargs)

Overloaded function.

1. get_residue_pair_rt6(pose1: pyrosetta.rosetta.core.pose.Pose, ir: int, pose2: pyrosetta.rosetta.core.pose.Pose, jr: int) -> pyrosetta.rosetta.utility.fixedsizearray1_double_6_t
2. get_residue_pair_rt6(pose1: pyrosetta.rosetta.core.pose.Pose, ir: int, pose2: pyrosetta.rosetta.core.pose.Pose, jr: int, type: pyrosetta.rosetta.core.scoring.motif.RPM_Type) -> pyrosetta.rosetta.utility.fixedsizearray1_double_6_t

C++: core::scoring::motif::get_residue_pair_rt6(const class core::pose::Pose &, unsigned long, const class core::pose::Pose &, unsigned long, const enum core::scoring::motif::RPM_Type &) –> class utility::fixedsizearray1<double, 6>

3. get_residue_pair_rt6(pose: pyrosetta.rosetta.core.pose.Pose, ir: int, jr: int) -> pyrosetta.rosetta.utility.fixedsizearray1_double_6_t
4. get_residue_pair_rt6(pose: pyrosetta.rosetta.core.pose.Pose, ir: int, jr: int, type: pyrosetta.rosetta.core.scoring.motif.RPM_Type) -> pyrosetta.rosetta.utility.fixedsizearray1_double_6_t

C++: core::scoring::motif::get_residue_pair_rt6(const class core::pose::Pose &, unsigned long, unsigned long, const enum core::scoring::motif::RPM_Type &) –> class utility::fixedsizearray1<double, 6>

pyrosetta.rosetta.core.scoring.motif.get_residue_pair_xform(*args, **kwargs)

Overloaded function.

1. get_residue_pair_xform(pose1: pyrosetta.rosetta.core.pose.Pose, ir: int, pose2: pyrosetta.rosetta.core.pose.Pose, jr: int) -> pyrosetta.rosetta.numeric.xyzTransform_double_t
2. get_residue_pair_xform(pose1: pyrosetta.rosetta.core.pose.Pose, ir: int, pose2: pyrosetta.rosetta.core.pose.Pose, jr: int, type: pyrosetta.rosetta.core.scoring.motif.RPM_Type) -> pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: core::scoring::motif::get_residue_pair_xform(const class core::pose::Pose &, unsigned long, const class core::pose::Pose &, unsigned long, const enum core::scoring::motif::RPM_Type &) –> class numeric::xyzTransform<double>

3. get_residue_pair_xform(pose: pyrosetta.rosetta.core.pose.Pose, ir: int, jr: int) -> pyrosetta.rosetta.numeric.xyzTransform_double_t
4. get_residue_pair_xform(pose: pyrosetta.rosetta.core.pose.Pose, ir: int, jr: int, type: pyrosetta.rosetta.core.scoring.motif.RPM_Type) -> pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: core::scoring::motif::get_residue_pair_xform(const class core::pose::Pose &, unsigned long, unsigned long, const enum core::scoring::motif::RPM_Type &) –> class numeric::xyzTransform<double>

pyrosetta.rosetta.core.scoring.motif.get_sasa(pose: pyrosetta.rosetta.core.pose.Pose, probesize: float) → pyrosetta.rosetta.utility.vector1_double

C++: core::scoring::motif::get_sasa(const class core::pose::Pose &, const double &) –> class utility::vector1<double, class std::allocator<double> >

pyrosetta.rosetta.core.scoring.motif.inverse_rt6(rt: pyrosetta.rosetta.utility.fixedsizearray1_double_6_t) → pyrosetta.rosetta.utility.fixedsizearray1_double_6_t

C++: core::scoring::motif::inverse_rt6(const class utility::fixedsizearray1<double, 6> &) –> class utility::fixedsizearray1<double, 6>

pyrosetta.rosetta.core.scoring.motif.preload_motif_data(mman: pyrosetta.rosetta.core.scoring.motif.MotifHashManager) → None

C++: core::scoring::motif::preload_motif_data(class core::scoring::motif::MotifHashManager &) –> void

pyrosetta.rosetta.core.scoring.motif.random_rotation() → pyrosetta.rosetta.numeric.xyzMatrix_double_t

C++: core::scoring::motif::random_rotation() –> class numeric::xyzMatrix<double>

pyrosetta.rosetta.core.scoring.motif.read_motifs_binary(*args, **kwargs)

Overloaded function.

1. read_motifs_binary(fname: str, motifs: pyrosetta.rosetta.core.scoring.motif.ResPairMotifs) -> bool

C++: core::scoring::motif::read_motifs_binary(const class std::basic_string<char> &, class core::scoring::motif::ResPairMotifs &) –> bool

2. read_motifs_binary(in: pyrosetta.rosetta.std.istream, motifs: pyrosetta.rosetta.core.scoring.motif.ResPairMotifs) -> bool

C++: core::scoring::motif::read_motifs_binary(class std::basic_istream<char> &, class core::scoring::motif::ResPairMotifs &) –> bool

3. read_motifs_binary(fnames: pyrosetta.rosetta.utility.vector1_std_string, motifs: pyrosetta.rosetta.core.scoring.motif.ResPairMotifs) -> bool

C++: core::scoring::motif::read_motifs_binary(const class utility::vector1<class std::basic_string<char>, class std::allocator<class std::basic_string<char> > > &, class core::scoring::motif::ResPairMotifs &) –> bool

pyrosetta.rosetta.core.scoring.motif.read_xfres_binary(*args, **kwargs)

Overloaded function.

1. read_xfres_binary(fname: str, Xfres: pyrosetta.rosetta.utility.vector1_core_scoring_motif_Xfres) -> bool

C++: core::scoring::motif::read_xfres_binary(const class std::basic_string<char> &, class utility::vector1<class core::scoring::motif::Xfres, class std::allocator<class core::scoring::motif::Xfres> > &) –> bool

2. read_xfres_binary(in: pyrosetta.rosetta.std.istream, Xfres: pyrosetta.rosetta.utility.vector1_core_scoring_motif_Xfres) -> bool

C++: core::scoring::motif::read_xfres_binary(class std::basic_istream<char> &, class utility::vector1<class core::scoring::motif::Xfres, class std::allocator<class core::scoring::motif::Xfres> > &) –> bool

3. read_xfres_binary(fnames: pyrosetta.rosetta.utility.vector1_std_string, Xfres: pyrosetta.rosetta.utility.vector1_core_scoring_motif_Xfres) -> bool

C++: core::scoring::motif::read_xfres_binary(const class utility::vector1<class std::basic_string<char>, class std::allocator<class std::basic_string<char> > > &, class utility::vector1<class core::scoring::motif::Xfres, class std::allocator<class core::scoring::motif::Xfres> > &) –> bool

pyrosetta.rosetta.core.scoring.motif.rpm_type1(type: pyrosetta.rosetta.core.scoring.motif.RPM_Type) → pyrosetta.rosetta.core.scoring.motif.RM_Type

C++: core::scoring::motif::rpm_type1(const enum core::scoring::motif::RPM_Type &) –> enum core::scoring::motif::RM_Type

pyrosetta.rosetta.core.scoring.motif.rpm_type2(type: pyrosetta.rosetta.core.scoring.motif.RPM_Type) → pyrosetta.rosetta.core.scoring.motif.RM_Type

C++: core::scoring::motif::rpm_type2(const enum core::scoring::motif::RPM_Type &) –> enum core::scoring::motif::RM_Type

pyrosetta.rosetta.core.scoring.motif.set_residue_pair_xform(*args, **kwargs)

Overloaded function.

1. set_residue_pair_xform(x: pyrosetta.rosetta.numeric.xyzTransform_double_t, pose: pyrosetta.rosetta.core.pose.Pose, ir: int, jr: int) -> None
2. set_residue_pair_xform(x: pyrosetta.rosetta.numeric.xyzTransform_double_t, pose: pyrosetta.rosetta.core.pose.Pose, ir: int, jr: int, type: pyrosetta.rosetta.core.scoring.motif.RPM_Type) -> None

C++: core::scoring::motif::set_residue_pair_xform(const class numeric::xyzTransform<double> &, class core::pose::Pose &, unsigned long, unsigned long, const enum core::scoring::motif::RPM_Type &) –> void

pyrosetta.rosetta.core.scoring.motif.tag_from_pdb_fname(fname0: str) → str

C++: core::scoring::motif::tag_from_pdb_fname(const class std::basic_string<char> &) –> std::string

pyrosetta.rosetta.core.scoring.motif.write_motifs_binary(*args, **kwargs)

Overloaded function.

1. write_motifs_binary(out: pyrosetta.rosetta.std.ostream, motifs: pyrosetta.rosetta.core.scoring.motif.ResPairMotifs) -> bool

C++: core::scoring::motif::write_motifs_binary(class std::basic_ostream<char> &, const class core::scoring::motif::ResPairMotifs &) –> bool

2. write_motifs_binary(fname: str, motifs: pyrosetta.rosetta.core.scoring.motif.ResPairMotifs) -> bool

C++: core::scoring::motif::write_motifs_binary(const class std::basic_string<char> &, const class core::scoring::motif::ResPairMotifs &) –> bool

pyrosetta.rosetta.core.scoring.motif.write_xfres_binary(*args, **kwargs)

Overloaded function.

1. write_xfres_binary(out: pyrosetta.rosetta.std.ostream, Xfres: pyrosetta.rosetta.utility.vector1_core_scoring_motif_Xfres) -> bool

C++: core::scoring::motif::write_xfres_binary(class std::basic_ostream<char> &, const class utility::vector1<class core::scoring::motif::Xfres, class std::allocator<class core::scoring::motif::Xfres> > &) –> bool

2. write_xfres_binary(fname: str, Xfres: pyrosetta.rosetta.utility.vector1_core_scoring_motif_Xfres) -> bool

C++: core::scoring::motif::write_xfres_binary(const class std::basic_string<char> &, const class utility::vector1<class core::scoring::motif::Xfres, class std::allocator<class core::scoring::motif::Xfres> > &) –> bool

pyrosetta.rosetta.core.scoring.motif.xform_pose(*args, **kwargs)

Overloaded function.

1. xform_pose(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.numeric.xyzTransform_double_t) -> None
2. xform_pose(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.numeric.xyzTransform_double_t, sres: int) -> None
3. xform_pose(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.numeric.xyzTransform_double_t, sres: int, eres: int) -> None

C++: core::scoring::motif::xform_pose(class core::pose::Pose &, const class numeric::xyzTransform<double> &, unsigned long, unsigned long) –> void