id

Bindings for core::id namespace

class pyrosetta.rosetta.core.id.AtomID

Bases: pybind11_builtins.pybind11_object

Atom identifier class. Defined by the atom number and the residue number.

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.id.AtomID) -> None
2. __init__(self: pyrosetta.rosetta.core.id.AtomID, arg0: pyrosetta.rosetta.core.id.AtomID) -> None
3. __init__(self: pyrosetta.rosetta.core.id.AtomID, atomno_in: int, rsd_in: int) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.core.id.AtomID) → str

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.id.AtomID, : pyrosetta.rosetta.core.id.AtomID) → pyrosetta.rosetta.core.id.AtomID

C++: core::id::AtomID::operator=(const class core::id::AtomID &) –> class core::id::AtomID &

atomno(self: pyrosetta.rosetta.core.id.AtomID) → int

C++: core::id::AtomID::atomno() –> unsigned long &

rsd(self: pyrosetta.rosetta.core.id.AtomID) → int

C++: core::id::AtomID::rsd() –> unsigned long &

valid(self: pyrosetta.rosetta.core.id.AtomID) → bool

Returns true if the AtomID is valid

must return false for BOGUS_ATOM_ID

C++: core::id::AtomID::valid() const –> bool

class pyrosetta.rosetta.core.id.BondID

Bases: pybind11_builtins.pybind11_object

two more classes, temporary for testing purposes

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.id.BondID) -> None
2. __init__(self: pyrosetta.rosetta.core.id.BondID, a1: pyrosetta.rosetta.core.id.AtomID, a2: pyrosetta.rosetta.core.id.AtomID) -> None
3. __init__(self: pyrosetta.rosetta.core.id.BondID, arg0: pyrosetta.rosetta.core.id.BondID) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

has(self: pyrosetta.rosetta.core.id.BondID, id: pyrosetta.rosetta.core.id.AtomID) → bool

C++: core::id::BondID::has(const class core::id::AtomID &) const –> bool

other_atom(self: pyrosetta.rosetta.core.id.BondID, id: pyrosetta.rosetta.core.id.AtomID) → pyrosetta.rosetta.core.id.AtomID

C++: core::id::BondID::other_atom(const class core::id::AtomID &) const –> const class core::id::AtomID &

reverse(self: pyrosetta.rosetta.core.id.BondID) → None

C++: core::id::BondID::reverse() –> void

reversed(self: pyrosetta.rosetta.core.id.BondID) → pyrosetta.rosetta.core.id.BondID

C++: core::id::BondID::reversed() const –> class core::id::BondID

class pyrosetta.rosetta.core.id.CacheableAtomID_MapVector

Bases: pyrosetta.rosetta.basic.datacache.CacheableData

AtomID_Map< xyzVector< Real > >

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.id.CacheableAtomID_MapVector) -> None
2. __init__(self: pyrosetta.rosetta.core.id.CacheableAtomID_MapVector, arg0: pyrosetta.rosetta.core.id.CacheableAtomID_MapVector) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.id.CacheableAtomID_MapVector, : pyrosetta.rosetta.core.id.CacheableAtomID_MapVector) → pyrosetta.rosetta.core.id.CacheableAtomID_MapVector

C++: core::id::CacheableAtomID_MapVector::operator=(const class core::id::CacheableAtomID_MapVector &) –> class core::id::CacheableAtomID_MapVector &

clone(self: pyrosetta.rosetta.core.id.CacheableAtomID_MapVector) → pyrosetta.rosetta.basic.datacache.CacheableData

C++: core::id::CacheableAtomID_MapVector::clone() const –> class std::shared_ptr<class basic::datacache::CacheableData>

get_self_ptr(self: pyrosetta.rosetta.basic.datacache.CacheableData) → pyrosetta.rosetta.basic.datacache.CacheableData

C++: basic::datacache::CacheableData::get_self_ptr() –> class std::shared_ptr<class basic::datacache::CacheableData>

get_self_weak_ptr(self: pyrosetta.rosetta.basic.datacache.CacheableData) → pyrosetta.rosetta.std.weak_ptr_basic_datacache_CacheableData_t

C++: basic::datacache::CacheableData::get_self_weak_ptr() –> class std::weak_ptr<class basic::datacache::CacheableData>

map(self: pyrosetta.rosetta.core.id.CacheableAtomID_MapVector) → pyrosetta.rosetta.core.id.AtomID_Map_numeric_xyzVector_double_t

C++: core::id::CacheableAtomID_MapVector::map() –> class core::id::AtomID_Map<class numeric::xyzVector<double> > &

class pyrosetta.rosetta.core.id.DOF_ID

Bases: pybind11_builtins.pybind11_object

Kinematics DOF identifier class

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.id.DOF_ID) -> None
2. __init__(self: pyrosetta.rosetta.core.id.DOF_ID, atom_id_in: pyrosetta.rosetta.core.id.AtomID, type_in: pyrosetta.rosetta.core.id.DOF_Type) -> None
3. __init__(self: pyrosetta.rosetta.core.id.DOF_ID, arg0: pyrosetta.rosetta.core.id.DOF_ID) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.core.id.DOF_ID) → str

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.id.DOF_ID, : pyrosetta.rosetta.core.id.DOF_ID) → pyrosetta.rosetta.core.id.DOF_ID

C++: core::id::DOF_ID::operator=(const class core::id::DOF_ID &) –> class core::id::DOF_ID &

atom_id(self: pyrosetta.rosetta.core.id.DOF_ID) → pyrosetta.rosetta.core.id.AtomID

C++: core::id::DOF_ID::atom_id() const –> const class core::id::AtomID &

atomno(self: pyrosetta.rosetta.core.id.DOF_ID) → int

C++: core::id::DOF_ID::atomno() const –> unsigned long

rsd(self: pyrosetta.rosetta.core.id.DOF_ID) → int

C++: core::id::DOF_ID::rsd() const –> unsigned long

type(self: pyrosetta.rosetta.core.id.DOF_ID) → pyrosetta.rosetta.core.id.DOF_Type

C++: core::id::DOF_ID::type() const –> enum core::id::DOF_Type

valid(self: pyrosetta.rosetta.core.id.DOF_ID) → bool

Is this DOF_ID valid?

Must return false for BOGUS_TORSION_ID.

C++: core::id::DOF_ID::valid() const –> bool

class pyrosetta.rosetta.core.id.DOF_ID_Range

Bases: pybind11_builtins.pybind11_object

Kinematics DOF identifier (with range) class

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.id.DOF_ID_Range) -> None
2. __init__(self: pyrosetta.rosetta.core.id.DOF_ID_Range, dof_id: pyrosetta.rosetta.core.id.DOF_ID, min: float, max: float) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.core.id.DOF_ID_Range) → str

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

dof_id(self: pyrosetta.rosetta.core.id.DOF_ID_Range) → pyrosetta.rosetta.core.id.DOF_ID

C++: core::id::DOF_ID_Range::dof_id() const –> const class core::id::DOF_ID &

max(self: pyrosetta.rosetta.core.id.DOF_ID_Range) → float

C++: core::id::DOF_ID_Range::max() const –> double

min(self: pyrosetta.rosetta.core.id.DOF_ID_Range) → float

C++: core::id::DOF_ID_Range::min() const –> double

class pyrosetta.rosetta.core.id.DOF_Type

Bases: pybind11_builtins.pybind11_object

DOF (degrees of freedom) type

• PHI : torsion or improper angle
• THETA : bond angle
• D : distance
• RB1-RB6 : rigid-body jump translation and rotation

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__(*args, **kwargs)

Overloaded function.

1. __eq__(self: pyrosetta.rosetta.core.id.DOF_Type, arg0: pyrosetta.rosetta.core.id.DOF_Type) -> bool
2. __eq__(self: pyrosetta.rosetta.core.id.DOF_Type, arg0: int) -> bool

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__getstate__(self: pyrosetta.rosetta.core.id.DOF_Type) → tuple

__gt__

Return self>value.

__hash__(self: pyrosetta.rosetta.core.id.DOF_Type) → int

__init__(self: pyrosetta.rosetta.core.id.DOF_Type, arg0: int) → None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__int__(self: pyrosetta.rosetta.core.id.DOF_Type) → int

__le__

Return self<=value.

__lt__

Return self<value.

__ne__(*args, **kwargs)

Overloaded function.

1. __ne__(self: pyrosetta.rosetta.core.id.DOF_Type, arg0: pyrosetta.rosetta.core.id.DOF_Type) -> bool
2. __ne__(self: pyrosetta.rosetta.core.id.DOF_Type, arg0: int) -> bool

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__(self: pyrosetta.rosetta.core.id.DOF_Type) → str

__setattr__

Implement setattr(self, name, value).

__setstate__(self: pyrosetta.rosetta.core.id.DOF_Type, arg0: tuple) → None

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

pyrosetta.rosetta.core.id.DOF_type_is_rb(t: pyrosetta.rosetta.core.id.DOF_Type) → bool

C++: core::id::DOF_type_is_rb(const enum core::id::DOF_Type) –> bool

class pyrosetta.rosetta.core.id.JumpID

Bases: pybind11_builtins.pybind11_object

/brief

Torsion identifier class

Note the order of the elements in construction calls:

( residue, type, torsion )

sort of from least to most specific

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.id.JumpID) -> None
2. __init__(self: pyrosetta.rosetta.core.id.JumpID, rsd1_in: int, rsd2_in: int) -> None
3. __init__(self: pyrosetta.rosetta.core.id.JumpID, arg0: pyrosetta.rosetta.core.id.JumpID) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.core.id.JumpID) → str

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

rsd1(self: pyrosetta.rosetta.core.id.JumpID) → int

C++: core::id::JumpID::rsd1() const –> unsigned long

rsd2(self: pyrosetta.rosetta.core.id.JumpID) → int

C++: core::id::JumpID::rsd2() –> unsigned long &

valid(self: pyrosetta.rosetta.core.id.JumpID) → bool

Is this id valid?

Must return false for BOGUS_TORSION_ID

C++: core::id::JumpID::valid() const –> bool

class pyrosetta.rosetta.core.id.NamedAtomID

Bases: pybind11_builtins.pybind11_object

Atom identifier class

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.id.NamedAtomID) -> None
2. __init__(self: pyrosetta.rosetta.core.id.NamedAtomID, arg0: pyrosetta.rosetta.core.id.NamedAtomID) -> None
3. __init__(self: pyrosetta.rosetta.core.id.NamedAtomID, atom_in: str, rsd_in: int) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.core.id.NamedAtomID) → str

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.id.NamedAtomID, : pyrosetta.rosetta.core.id.NamedAtomID) → pyrosetta.rosetta.core.id.NamedAtomID

C++: core::id::NamedAtomID::operator=(const class core::id::NamedAtomID &) –> class core::id::NamedAtomID &

atom(self: pyrosetta.rosetta.core.id.NamedAtomID) → str

C++: core::id::NamedAtomID::atom() –> std::string &

rsd(self: pyrosetta.rosetta.core.id.NamedAtomID) → int

C++: core::id::NamedAtomID::rsd() –> unsigned long &

to_string(self: pyrosetta.rosetta.core.id.NamedAtomID) → str

C++: core::id::NamedAtomID::to_string() const –> std::string

valid(self: pyrosetta.rosetta.core.id.NamedAtomID) → bool

Is this id valid?

Must return false for BOGUS_ATOM_ID

C++: core::id::NamedAtomID::valid() const –> bool

class pyrosetta.rosetta.core.id.NamedStubID

Bases: pybind11_builtins.pybind11_object

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.id.NamedStubID, a1: pyrosetta.rosetta.core.id.NamedAtomID, a2: pyrosetta.rosetta.core.id.NamedAtomID, a3: pyrosetta.rosetta.core.id.NamedAtomID) -> None
2. __init__(self: pyrosetta.rosetta.core.id.NamedStubID, c: pyrosetta.rosetta.core.id.NamedAtomID, a1: pyrosetta.rosetta.core.id.NamedAtomID, a2: pyrosetta.rosetta.core.id.NamedAtomID, a3: pyrosetta.rosetta.core.id.NamedAtomID) -> None
3. __init__(self: pyrosetta.rosetta.core.id.NamedStubID, a1: str, a2: str, a3: str, rsd: int) -> None
4. __init__(self: pyrosetta.rosetta.core.id.NamedStubID, c: str, a1: str, a2: str, a3: str, rsd: int) -> None
5. __init__(self: pyrosetta.rosetta.core.id.NamedStubID, a1: str, rsd1: int, a2: str, rsd2: int, a3: str, rsd3: int) -> None
6. __init__(self: pyrosetta.rosetta.core.id.NamedStubID, : pyrosetta.rosetta.utility.vector1_std_string, rsd: int) -> None
7. __init__(self: pyrosetta.rosetta.core.id.NamedStubID) -> None
8. __init__(self: pyrosetta.rosetta.core.id.NamedStubID, arg0: pyrosetta.rosetta.core.id.NamedStubID) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.core.id.NamedStubID) → str

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.id.NamedStubID, : pyrosetta.rosetta.core.id.NamedStubID) → pyrosetta.rosetta.core.id.NamedStubID

C++: core::id::NamedStubID::operator=(const class core::id::NamedStubID &) –> class core::id::NamedStubID &

atom(self: pyrosetta.rosetta.core.id.NamedStubID, index: int) → pyrosetta.rosetta.core.id.NamedAtomID

C++: core::id::NamedStubID::atom(const unsigned long) const –> const class core::id::NamedAtomID &

center(self: pyrosetta.rosetta.core.id.NamedStubID) → pyrosetta.rosetta.core.id.NamedAtomID

C++: core::id::NamedStubID::center() const –> const class core::id::NamedAtomID &

valid(self: pyrosetta.rosetta.core.id.NamedStubID) → bool

C++: core::id::NamedStubID::valid() const –> bool

class pyrosetta.rosetta.core.id.StubID

Bases: pybind11_builtins.pybind11_object

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__(self: pyrosetta.rosetta.core.id.StubID, rhs: pyrosetta.rosetta.core.id.StubID) → bool

C++: core::id::StubID::operator==(const class core::id::StubID &) const –> bool

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.id.StubID, a1: pyrosetta.rosetta.core.id.AtomID, a2: pyrosetta.rosetta.core.id.AtomID, a3: pyrosetta.rosetta.core.id.AtomID) -> None
2. __init__(self: pyrosetta.rosetta.core.id.StubID, c: pyrosetta.rosetta.core.id.AtomID, a1: pyrosetta.rosetta.core.id.AtomID, a2: pyrosetta.rosetta.core.id.AtomID, a3: pyrosetta.rosetta.core.id.AtomID) -> None
3. __init__(self: pyrosetta.rosetta.core.id.StubID) -> None
4. __init__(self: pyrosetta.rosetta.core.id.StubID, arg0: pyrosetta.rosetta.core.id.StubID) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__(self: pyrosetta.rosetta.core.id.StubID, rhs: pyrosetta.rosetta.core.id.StubID) → bool

C++: core::id::StubID::operator!=(const class core::id::StubID &) const –> bool

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.core.id.StubID) → str

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.id.StubID, : pyrosetta.rosetta.core.id.StubID) → pyrosetta.rosetta.core.id.StubID

C++: core::id::StubID::operator=(const class core::id::StubID &) –> class core::id::StubID &

atom(self: pyrosetta.rosetta.core.id.StubID, index: int) → pyrosetta.rosetta.core.id.AtomID

C++: core::id::StubID::atom(const unsigned long) const –> const class core::id::AtomID &

center(self: pyrosetta.rosetta.core.id.StubID) → pyrosetta.rosetta.core.id.AtomID

C++: core::id::StubID::center() const –> const class core::id::AtomID &

valid(self: pyrosetta.rosetta.core.id.StubID) → bool

C++: core::id::StubID::valid() const –> bool

class pyrosetta.rosetta.core.id.TorsionID

Bases: pybind11_builtins.pybind11_object

Torsion identifier class

Consider a few examples to get a better picture for how torsions are uniquely identified:

Note the order of the elements in construction calls (residue, type, torsion) go from least to most specific.

TorsionIDs are very different for JUMP TorsionTypes. In such a case, they are interpreted as follows: TorsionID(1, JUMP, 2) // RB2 of jump #1 for the Pose.

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.id.TorsionID) -> None
2. __init__(self: pyrosetta.rosetta.core.id.TorsionID, arg0: pyrosetta.rosetta.core.id.TorsionID) -> None
3. __init__(self: pyrosetta.rosetta.core.id.TorsionID, rsd_in: int, type_in: pyrosetta.rosetta.core.id.TorsionType, torsion_in: int) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.core.id.TorsionID) → str

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.id.TorsionID, : pyrosetta.rosetta.core.id.TorsionID) → pyrosetta.rosetta.core.id.TorsionID

C++: core::id::TorsionID::operator=(const class core::id::TorsionID &) –> class core::id::TorsionID &

rsd(self: pyrosetta.rosetta.core.id.TorsionID) → int

For this TorsionID, set the Residue number within the complex OR the Jump number for the Pose.

C++: core::id::TorsionID::rsd() –> unsigned long &

torsion(self: pyrosetta.rosetta.core.id.TorsionID) → int

Set the torsion number of the given type within the residue OR

the rigid-body identifier for a JUMP TorsionType.

C++: core::id::TorsionID::torsion() –> unsigned long &

type(self: pyrosetta.rosetta.core.id.TorsionID) → pyrosetta.rosetta.core.id.TorsionType

Set the type (BB, CHI,NU, BRANCH, JUMP) of this torsion.

C++: core::id::TorsionID::type() –> enum core::id::TorsionType &

valid(self: pyrosetta.rosetta.core.id.TorsionID) → bool

Is this id valid?

Must return false for BOGUS_TORSION_ID

C++: core::id::TorsionID::valid() const –> bool

class pyrosetta.rosetta.core.id.TorsionID_Range

Bases: pybind11_builtins.pybind11_object

Kinematics DOF identifier (with range) class

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.id.TorsionID_Range) -> None
2. __init__(self: pyrosetta.rosetta.core.id.TorsionID_Range, torsion_id: pyrosetta.rosetta.core.id.TorsionID, min: float, max: float) -> None
3. __init__(self: pyrosetta.rosetta.core.id.TorsionID_Range, arg0: pyrosetta.rosetta.core.id.TorsionID_Range) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.core.id.TorsionID_Range) → str

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

max(self: pyrosetta.rosetta.core.id.TorsionID_Range) → float

C++: core::id::TorsionID_Range::max() const –> double

min(self: pyrosetta.rosetta.core.id.TorsionID_Range) → float

C++: core::id::TorsionID_Range::min() const –> double

torsion_id(self: pyrosetta.rosetta.core.id.TorsionID_Range) → pyrosetta.rosetta.core.id.TorsionID

C++: core::id::TorsionID_Range::torsion_id() const –> const class core::id::TorsionID &

class pyrosetta.rosetta.core.id.TorsionType

Bases: pybind11_builtins.pybind11_object

Torsion type – used in the TorsionID class

• BB : “backbone” torsion (Actually, this is a main-chain torsion.)
• CHI : sidechain torsion
• NU : internal ring torsion
• BRANCH : torsions at branch connection points which are CHEMICAL edges of the FoldTree
• JUMP : rigid-body transformation

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__(*args, **kwargs)

Overloaded function.

1. __eq__(self: pyrosetta.rosetta.core.id.TorsionType, arg0: pyrosetta.rosetta.core.id.TorsionType) -> bool
2. __eq__(self: pyrosetta.rosetta.core.id.TorsionType, arg0: int) -> bool

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__getstate__(self: pyrosetta.rosetta.core.id.TorsionType) → tuple

__gt__

Return self>value.

__hash__(self: pyrosetta.rosetta.core.id.TorsionType) → int

__init__(self: pyrosetta.rosetta.core.id.TorsionType, arg0: int) → None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__int__(self: pyrosetta.rosetta.core.id.TorsionType) → int

__le__

Return self<=value.

__lt__

Return self<value.

__ne__(*args, **kwargs)

Overloaded function.

1. __ne__(self: pyrosetta.rosetta.core.id.TorsionType, arg0: pyrosetta.rosetta.core.id.TorsionType) -> bool
2. __ne__(self: pyrosetta.rosetta.core.id.TorsionType, arg0: int) -> bool

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__(self: pyrosetta.rosetta.core.id.TorsionType) → str

__setattr__

Implement setattr(self, name, value).

__setstate__(self: pyrosetta.rosetta.core.id.TorsionType, arg0: tuple) → None

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

pyrosetta.rosetta.core.id.combine_sequence_mappings(smap: pyrosetta.rosetta.core.id.SequenceMapping, smap_to_add: pyrosetta.rosetta.core.id.SequenceMapping) → None

combine the input sequence mappings into one

utility function added by flo, feb 2011

C++: core::id::combine_sequence_mappings(class core::id::SequenceMapping &, const class core::id::SequenceMapping &) –> void

pyrosetta.rosetta.core.id.get_rb_number(t: pyrosetta.rosetta.core.id.DOF_Type) → int

C++: core::id::get_rb_number(const enum core::id::DOF_Type) –> unsigned long

pyrosetta.rosetta.core.id.get_rb_type(k: int) → pyrosetta.rosetta.core.id.DOF_Type

C++: core::id::get_rb_type(const unsigned long) –> enum core::id::DOF_Type

pyrosetta.rosetta.core.id.to_string(*args, **kwargs)

Overloaded function.

1. to_string(type: pyrosetta.rosetta.core.id.DOF_Type) -> str

C++: core::id::to_string(const enum core::id::DOF_Type &) –> std::string

2. to_string(type: pyrosetta.rosetta.core.id.TorsionType) -> str

C++: core::id::to_string(const enum core::id::TorsionType &) –> std::string