dssp

Bindings for core::scoring::dssp namespace

class pyrosetta.rosetta.core.scoring.dssp.Dssp

Bases: pybind11_builtins.pybind11_object

Non-protein residues get a DSSP value of ‘ ‘

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, : pyrosetta.rosetta.core.pose.Pose) -> None
2. __init__(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, arg0: pyrosetta.rosetta.core.scoring.dssp.Dssp) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, : pyrosetta.rosetta.core.scoring.dssp.Dssp) → pyrosetta.rosetta.core.scoring.dssp.Dssp

C++: core::scoring::dssp::Dssp::operator=(const class core::scoring::dssp::Dssp &) –> class core::scoring::dssp::Dssp &

bb_pair_score(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, res1: int, res2: int) → float

C++: core::scoring::dssp::Dssp::bb_pair_score(unsigned long, unsigned long) –> float

dssp(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, dssp_secstruct: ObjexxFCL::FArray1<char>) → None

C++: core::scoring::dssp::Dssp::dssp(class ObjexxFCL::FArray1<char> &) –> void

dssp_featurizer(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, secstruct: ObjexxFCL::FArray1<char>) → None

C++: core::scoring::dssp::Dssp::dssp_featurizer(class ObjexxFCL::FArray1<char> &) –> void

dssp_reduced(*args, **kwargs)

Overloaded function.

1. dssp_reduced(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, secstruct: ObjexxFCL::FArray1<char>) -> None

C++: core::scoring::dssp::Dssp::dssp_reduced(class ObjexxFCL::FArray1<char> &) –> void

2. dssp_reduced(self: pyrosetta.rosetta.core.scoring.dssp.Dssp) -> None

C++: core::scoring::dssp::Dssp::dssp_reduced() –> void

dssp_reduced_IG_as_L(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, secstruct: ObjexxFCL::FArray1<char>) → None

C++: core::scoring::dssp::Dssp::dssp_reduced_IG_as_L(class ObjexxFCL::FArray1<char> &) –> void

dssp_reduced_IG_as_L_if_adjcent_H(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, secstruct: ObjexxFCL::FArray1<char>) → None

C++: core::scoring::dssp::Dssp::dssp_reduced_IG_as_L_if_adjcent_H(class ObjexxFCL::FArray1<char> &) –> void

get_dssp_reduced_IG_as_L_secstruct(self: pyrosetta.rosetta.core.scoring.dssp.Dssp) → str

C++: core::scoring::dssp::Dssp::get_dssp_reduced_IG_as_L_secstruct() –> std::string

get_dssp_secstruct(*args, **kwargs)

Overloaded function.

1. get_dssp_secstruct(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, resid: int) -> str

C++: core::scoring::dssp::Dssp::get_dssp_secstruct(unsigned long) –> char

2. get_dssp_secstruct(self: pyrosetta.rosetta.core.scoring.dssp.Dssp) -> str

C++: core::scoring::dssp::Dssp::get_dssp_secstruct() –> std::string

in_paired_strands(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, res1: int, res2: int) → bool

C++: core::scoring::dssp::Dssp::in_paired_strands(unsigned long, unsigned long) const –> bool

insert_dssp_ss_into_pose(*args, **kwargs)

Overloaded function.

1. insert_dssp_ss_into_pose(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, pose: pyrosetta.rosetta.core.pose.Pose) -> None
2. insert_dssp_ss_into_pose(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, pose: pyrosetta.rosetta.core.pose.Pose, recompute: bool) -> None

C++: core::scoring::dssp::Dssp::insert_dssp_ss_into_pose(class core::pose::Pose &, bool) –> void

insert_edge_ss_into_pose(*args, **kwargs)

Overloaded function.

1. insert_edge_ss_into_pose(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, pose: pyrosetta.rosetta.core.pose.Pose) -> None
2. insert_edge_ss_into_pose(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, pose: pyrosetta.rosetta.core.pose.Pose, recompute: bool) -> None

C++: core::scoring::dssp::Dssp::insert_edge_ss_into_pose(class core::pose::Pose &, bool) –> void

insert_ss_into_pose(*args, **kwargs)

Overloaded function.

1. insert_ss_into_pose(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, pose: pyrosetta.rosetta.core.pose.Pose) -> None
2. insert_ss_into_pose(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, pose: pyrosetta.rosetta.core.pose.Pose, recompute: bool) -> None

C++: core::scoring::dssp::Dssp::insert_ss_into_pose(class core::pose::Pose &, bool) –> void

insert_ss_into_pose_no_IG_helix(*args, **kwargs)

Overloaded function.

1. insert_ss_into_pose_no_IG_helix(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, pose: pyrosetta.rosetta.core.pose.Pose) -> None
2. insert_ss_into_pose_no_IG_helix(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, pose: pyrosetta.rosetta.core.pose.Pose, recompute: bool) -> None

C++: core::scoring::dssp::Dssp::insert_ss_into_pose_no_IG_helix(class core::pose::Pose &, bool) –> void

num_pairings(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, resi: int) → int

C++: core::scoring::dssp::Dssp::num_pairings(unsigned long) const –> unsigned long

paired(self: pyrosetta.rosetta.core.scoring.dssp.Dssp, res1: int, res2: int, antiparallel: bool) → bool

C++: core::scoring::dssp::Dssp::paired(unsigned long, unsigned long, bool) –> bool

strand_pairing_set(self: pyrosetta.rosetta.core.scoring.dssp.Dssp) → core::scoring::dssp::StrandPairingSet

C++: core::scoring::dssp::Dssp::strand_pairing_set() –> const class core::scoring::dssp::StrandPairingSet &

class pyrosetta.rosetta.core.scoring.dssp.StrandPairing

Bases: pybind11_builtins.pybind11_object

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, rhs: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → int

C++: core::scoring::dssp::StrandPairing::operator==(const class core::scoring::dssp::StrandPairing &) const –> unsigned long

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) -> None
2. __init__(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, res1: int, res2: int, antiparallel: bool, pleating: int) -> None
3. __init__(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, arg0: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → str

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

antiparallel(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → bool

C++: core::scoring::dssp::StrandPairing::antiparallel() const –> bool

assign(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, : pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → pyrosetta.rosetta.core.scoring.dssp.StrandPairing

C++: core::scoring::dssp::StrandPairing::operator=(const class core::scoring::dssp::StrandPairing &) –> class core::scoring::dssp::StrandPairing &

begin1(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → int

C++: core::scoring::dssp::StrandPairing::begin1() const –> unsigned long

check_pleat(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → bool

C++: core::scoring::dssp::StrandPairing::check_pleat() const –> bool

contact_order(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → int

C++: core::scoring::dssp::StrandPairing::contact_order() const –> unsigned long

contains(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, res: int) → bool

C++: core::scoring::dssp::StrandPairing::contains(unsigned long) const –> bool

end1(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → int

C++: core::scoring::dssp::StrandPairing::end1() const –> unsigned long

extend(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, res: int, res2: int, antiparallel: bool, pleating: int) → bool

C++: core::scoring::dssp::StrandPairing::extend(unsigned long, unsigned long, bool, unsigned long) –> bool

extend_to(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, res: int) → None

C++: core::scoring::dssp::StrandPairing::extend_to(unsigned long) –> void

get_all_register_and_bulges(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, regs: pyrosetta.rosetta.utility.vector1_unsigned_long, bulges: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::scoring::dssp::StrandPairing::get_all_register_and_bulges(class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) const –> void

get_beta_pairs(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, : pyrosetta.rosetta.utility.vector1_core_scoring_dssp_Pairing) → None

C++: core::scoring::dssp::StrandPairing::get_beta_pairs(class utility::vector1<class core::scoring::dssp::Pairing, class std::allocator<class core::scoring::dssp::Pairing> > &) const –> void

get_pair(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, res: int) → int

C++: core::scoring::dssp::StrandPairing::get_pair(unsigned long) const –> unsigned long

get_pleating(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, res: int) → int

C++: core::scoring::dssp::StrandPairing::get_pleating(unsigned long) const –> unsigned long

get_register(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → int

C++: core::scoring::dssp::StrandPairing::get_register() const –> unsigned long

has_common_pairing(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, other: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → bool

C++: core::scoring::dssp::StrandPairing::has_common_pairing(const class core::scoring::dssp::StrandPairing &) const –> bool

has_pairing(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, : pyrosetta.rosetta.core.scoring.dssp.Pairing) → bool

C++: core::scoring::dssp::StrandPairing::has_pairing(const class core::scoring::dssp::Pairing &) const –> bool

hash_value(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → int

C++: core::scoring::dssp::StrandPairing::hash_value() const –> unsigned long

is_bulge(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, res: int) → bool

C++: core::scoring::dssp::StrandPairing::is_bulge(unsigned long) const –> bool

is_ladder(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → bool

C++: core::scoring::dssp::StrandPairing::is_ladder() const –> bool

merge(*args, **kwargs)

Overloaded function.

1. merge(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, other: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) -> bool
2. merge(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, other: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, domerge: bool) -> bool

C++: core::scoring::dssp::StrandPairing::merge(const class core::scoring::dssp::StrandPairing &, bool) –> bool

mergeable(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, other: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → bool

C++: core::scoring::dssp::StrandPairing::mergeable(const class core::scoring::dssp::StrandPairing &) const –> bool

paired(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, res1: int, res2: int, anti: bool) → bool

C++: core::scoring::dssp::StrandPairing::paired(unsigned long, unsigned long, bool) const –> bool

range_check(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → bool

C++: core::scoring::dssp::StrandPairing::range_check() const –> bool

show_internals(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing, out: pyrosetta.rosetta.std.ostream) → None

C++: core::scoring::dssp::StrandPairing::show_internals(class std::basic_ostream<char> &) const –> void

size(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → int

C++: core::scoring::dssp::StrandPairing::size() const –> unsigned long

valid_ends(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → bool

C++: core::scoring::dssp::StrandPairing::valid_ends() const –> bool

class pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet

Bases: pybind11_builtins.pybind11_object

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet) -> None
2. __init__(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, hbonds: pyrosetta.rosetta.ObjexxFCL.FArray2_float_t, threshold: float, : pyrosetta.rosetta.core.pose.Pose) -> None
3. __init__(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, arg0: pyrosetta.rosetta.core.pose.Pose) -> None

doc

4. __init__(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, : pyrosetta.rosetta.core.pose.Pose, threshold: float) -> None
5. __init__(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, : pyrosetta.rosetta.utility.vector1_core_scoring_dssp_Pairing) -> None
6. __init__(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, arg0: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet) → str

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, : pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet) → pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet

C++: core::scoring::dssp::StrandPairingSet::operator=(const class core::scoring::dssp::StrandPairingSet &) –> class core::scoring::dssp::StrandPairingSet &

begin(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet) → __gnu_cxx::__normal_iterator<core::scoring::dssp::StrandPairing const*, std::vector<core::scoring::dssp::StrandPairing, std::allocator<core::scoring::dssp::StrandPairing> > >

C++: core::scoring::dssp::StrandPairingSet::begin() const –> class __gnu_cxx::__normal_iterator<const class core::scoring::dssp::StrandPairing *, class std::vector<class core::scoring::dssp::StrandPairing, class std::allocator<class core::scoring::dssp::StrandPairing> > >

check_pleat(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet) → bool

C++: core::scoring::dssp::StrandPairingSet::check_pleat() const –> bool

dssp_state(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, res: int) → str

C++: core::scoring::dssp::StrandPairingSet::dssp_state(unsigned long) const –> char

end(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet) → __gnu_cxx::__normal_iterator<core::scoring::dssp::StrandPairing const*, std::vector<core::scoring::dssp::StrandPairing, std::allocator<core::scoring::dssp::StrandPairing> > >

C++: core::scoring::dssp::StrandPairingSet::end() const –> class __gnu_cxx::__normal_iterator<const class core::scoring::dssp::StrandPairing *, class std::vector<class core::scoring::dssp::StrandPairing, class std::allocator<class core::scoring::dssp::StrandPairing> > >

featurizer_state(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, res: int) → str

C++: core::scoring::dssp::StrandPairingSet::featurizer_state(unsigned long) const –> char

get_beta_pairs(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, : pyrosetta.rosetta.utility.vector1_core_scoring_dssp_Pairing) → None

C++: core::scoring::dssp::StrandPairingSet::get_beta_pairs(class utility::vector1<class core::scoring::dssp::Pairing, class std::allocator<class core::scoring::dssp::Pairing> > &) const –> void

has_pairing(*args, **kwargs)

Overloaded function.

1. has_pairing(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, : pyrosetta.rosetta.core.scoring.dssp.Pairing) -> bool

C++: core::scoring::dssp::StrandPairingSet::has_pairing(const class core::scoring::dssp::Pairing &) const –> bool

2. has_pairing(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, : pyrosetta.rosetta.core.scoring.dssp.StrandPairing) -> bool

C++: core::scoring::dssp::StrandPairingSet::has_pairing(const class core::scoring::dssp::StrandPairing &) const –> bool

merge(*args, **kwargs)

Overloaded function.

1. merge(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, other: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet) -> bool
2. merge(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, other: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, domerge: bool) -> bool

C++: core::scoring::dssp::StrandPairingSet::merge(const class core::scoring::dssp::StrandPairingSet &, bool) –> bool

paired(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, res1: int, res2: int, antiparallel: bool) → bool

C++: core::scoring::dssp::StrandPairingSet::paired(unsigned long, unsigned long, bool) const –> bool

push_back(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, sp: pyrosetta.rosetta.core.scoring.dssp.StrandPairing) → None

C++: core::scoring::dssp::StrandPairingSet::push_back(const class core::scoring::dssp::StrandPairing &) –> void

size(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet) → int

C++: core::scoring::dssp::StrandPairingSet::size() const –> unsigned long

strand_pairing(self: pyrosetta.rosetta.core.scoring.dssp.StrandPairingSet, i: int) → pyrosetta.rosetta.core.scoring.dssp.StrandPairing

C++: core::scoring::dssp::StrandPairingSet::strand_pairing(unsigned long) const –> const class core::scoring::dssp::StrandPairing &

pyrosetta.rosetta.core.scoring.dssp.fill_hbond_bb_pair_score_dssp(: pyrosetta.rosetta.core.pose.Pose, hbond_bb_pair_score_: ObjexxFCL::FArray2D<float>) → None

C++: core::scoring::dssp::fill_hbond_bb_pair_score_dssp(const class core::pose::Pose &, class ObjexxFCL::FArray2D<float> &) –> void

pyrosetta.rosetta.core.scoring.dssp.get_CA_vectors(ca1: pyrosetta.rosetta.utility.vector1_numeric_xyzVector_double_t, ca2: pyrosetta.rosetta.utility.vector1_numeric_xyzVector_double_t, a: pyrosetta.rosetta.numeric.xyzVector_double_t, b: pyrosetta.rosetta.numeric.xyzVector_double_t, c: pyrosetta.rosetta.numeric.xyzVector_double_t) → None

C++: core::scoring::dssp::get_CA_vectors(const class utility::vector1<class numeric::xyzVector<double>, class std::allocator<class numeric::xyzVector<double> > > &, const class utility::vector1<class numeric::xyzVector<double>, class std::allocator<class numeric::xyzVector<double> > > &, class numeric::xyzVector<double> &, class numeric::xyzVector<double> &, class numeric::xyzVector<double> &) –> void

pyrosetta.rosetta.core.scoring.dssp.get_pairing_geometry(pose: pyrosetta.rosetta.core.pose.Pose, res1: int, res2: int, orientation: float, pleating1: float, pleating2: float) → None

C++: core::scoring::dssp::get_pairing_geometry(const class core::pose::Pose &, const unsigned long, const unsigned long, double &, double &, double &) –> void

pyrosetta.rosetta.core.scoring.dssp.get_pleating(pose: pyrosetta.rosetta.core.pose.Pose, pos1: int, pos2: int, orientation: int, pleating: int) → None

C++: core::scoring::dssp::get_pleating(const class core::pose::Pose &, const unsigned long, const unsigned long, unsigned long &, unsigned long &) –> void

pyrosetta.rosetta.core.scoring.dssp.has_orientation_and_pleating(: pyrosetta.rosetta.utility.vector1_core_scoring_dssp_Pairing) → bool

C++: core::scoring::dssp::has_orientation_and_pleating(const class utility::vector1<class core::scoring::dssp::Pairing, class std::allocator<class core::scoring::dssp::Pairing> > &) –> bool

pyrosetta.rosetta.core.scoring.dssp.read_pairing_list(*args, **kwargs)

Overloaded function.

1. read_pairing_list(pairing_file: str, pairings: pyrosetta.rosetta.utility.vector1_core_scoring_dssp_Pairing) -> None

add pairings in pairing_file to list “pairings”

C++: core::scoring::dssp::read_pairing_list(class std::basic_string<char>, class utility::vector1<class core::scoring::dssp::Pairing, class std::allocator<class core::scoring::dssp::Pairing> > &) –> void

2. read_pairing_list(is: pyrosetta.rosetta.std.istream, pairings: pyrosetta.rosetta.utility.vector1_core_scoring_dssp_Pairing) -> None

C++: core::scoring::dssp::read_pairing_list(class std::basic_istream<char> &, class utility::vector1<class core::scoring::dssp::Pairing, class std::allocator<class core::scoring::dssp::Pairing> > &) –> void