symmetry¶

Bindings for core::pose::symmetry namespace

pyrosetta.rosetta.core.pose.symmetry.extract_asymmetric_unit(*args, **kwargs)¶

Overloaded function.

extract_asymmetric_unit(pose_in: pyrosetta.rosetta.core.pose.Pose, pose_out: pyrosetta.rosetta.core.pose.Pose) -> None
extract_asymmetric_unit(pose_in: pyrosetta.rosetta.core.pose.Pose, pose_out: pyrosetta.rosetta.core.pose.Pose, with_virtual_atoms: bool) -> None
extract_asymmetric_unit(pose_in: pyrosetta.rosetta.core.pose.Pose, pose_out: pyrosetta.rosetta.core.pose.Pose, with_virtual_atoms: bool, with_unknown_aa: bool) -> None

extract the asu from a pose… unlike previous function symmetric clones are thrown out

Symmetric input pose containing the asymmetric subunit of interest

Asymmetric subunit will be placed into this object

If true, virtual atoms related to symmetry will be kept with the asymmetric subunit.

If false, virtual atoms will be removed (default=true)

If false, amino acids with type aa_unk will be ignored. If true, amino acids with

type aa_unk will be extracted (default=false)

C++: core::pose::symmetry::extract_asymmetric_unit(const class core::pose::Pose &, class core::pose::Pose &, const bool, const bool) –> void

pyrosetta.rosetta.core.pose.symmetry.extract_asymmetric_unit_pdb_info(pose: pyrosetta.rosetta.core.pose.Pose, pdb_info_src: pyrosetta.rosetta.core.pose.PDBInfo, pdb_info_target: pyrosetta.rosetta.core.pose.PDBInfo) → None¶: C++: core::pose::symmetry::extract_asymmetric_unit_pdb_info(const class core::pose::Pose &, class std::shared_ptr<const class core::pose::PDBInfo>, class std::shared_ptr<class core::pose::PDBInfo>) –> void

pyrosetta.rosetta.core.pose.symmetry.find_new_symmetric_jump_residues(pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: core::pose::symmetry::find_new_symmetric_jump_residues(class core::pose::Pose &) –> void

pyrosetta.rosetta.core.pose.symmetry.find_symmetric_basejump_anchor(pose: pyrosetta.rosetta.core.pose.Pose) → int¶: C++: core::pose::symmetry::find_symmetric_basejump_anchor(class core::pose::Pose &) –> int

pyrosetta.rosetta.core.pose.symmetry.get_asymmetric_pose_copy_from_symmetric_pose(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.core.pose.Pose¶: C++: core::pose::symmetry::get_asymmetric_pose_copy_from_symmetric_pose(const class core::pose::Pose &) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_buildingblock_and_neighbor_subs(pose_in: pyrosetta.rosetta.core.pose.Pose, intra_subs: pyrosetta.rosetta.utility.vector1_unsigned_long) → pyrosetta.rosetta.core.pose.Pose¶: C++: core::pose::symmetry::get_buildingblock_and_neighbor_subs(const class core::pose::Pose &, class utility::vector1<unsigned long, class std::allocator<unsigned long> >) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_component_lower_bound(pose: pyrosetta.rosetta.core.pose.Pose, c: str) → int¶: C++: core::pose::symmetry::get_component_lower_bound(const class core::pose::Pose &, char) –> unsigned long

pyrosetta.rosetta.core.pose.symmetry.get_component_of_residue(pose: pyrosetta.rosetta.core.pose.Pose, ir: int) → str¶: C++: core::pose::symmetry::get_component_of_residue(const class core::pose::Pose &, unsigned long) –> char

pyrosetta.rosetta.core.pose.symmetry.get_component_upper_bound(pose: pyrosetta.rosetta.core.pose.Pose, c: str) → int¶: C++: core::pose::symmetry::get_component_upper_bound(const class core::pose::Pose &, char) –> unsigned long

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_and_neighbor_resis(*args, **kwargs)¶

Overloaded function.

get_full_intracomponent_and_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_unsigned_long
get_full_intracomponent_and_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_full_intracomponent_and_neighbor_resis(const class core::pose::Pose &, class std::basic_string<char>, double) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_and_neighbor_subpose(*args, **kwargs)¶

Overloaded function.

get_full_intracomponent_and_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.core.pose.Pose
get_full_intracomponent_and_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_full_intracomponent_and_neighbor_subpose(const class core::pose::Pose &, class std::basic_string<char>, double) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_and_neighbor_subs(*args, **kwargs)¶

Overloaded function.

get_full_intracomponent_and_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_std_string
get_full_intracomponent_and_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::get_full_intracomponent_and_neighbor_subs(const class core::pose::Pose &, class std::basic_string<char>, double) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_neighbor_resis(*args, **kwargs)¶

Overloaded function.

get_full_intracomponent_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_unsigned_long
get_full_intracomponent_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_full_intracomponent_neighbor_resis(const class core::pose::Pose &, class std::basic_string<char>, double) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_neighbor_subpose(*args, **kwargs)¶

Overloaded function.

get_full_intracomponent_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.core.pose.Pose
get_full_intracomponent_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_full_intracomponent_neighbor_subpose(const class core::pose::Pose &, class std::basic_string<char>, double) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_neighbor_subs(*args, **kwargs)¶

Overloaded function.

get_full_intracomponent_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_std_string
get_full_intracomponent_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::get_full_intracomponent_neighbor_subs(const class core::pose::Pose &, class std::basic_string<char>, double) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) → pyrosetta.rosetta.utility.vector1_unsigned_long¶: C++: core::pose::symmetry::get_full_intracomponent_resis(const class core::pose::Pose &, class std::basic_string<char>) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) → pyrosetta.rosetta.core.pose.Pose¶: C++: core::pose::symmetry::get_full_intracomponent_subpose(const class core::pose::Pose &, class std::basic_string<char>) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_subs(pose: pyrosetta.rosetta.core.pose.Pose, jname: str) → pyrosetta.rosetta.utility.vector1_std_string¶: C++: core::pose::symmetry::get_full_intracomponent_subs(const class core::pose::Pose &, const class std::basic_string<char> &) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_interneighbor_resis(*args, **kwargs)¶

Overloaded function.

get_intracomponent_and_interneighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_unsigned_long
get_intracomponent_and_interneighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_intracomponent_and_interneighbor_resis(const class core::pose::Pose &, class std::basic_string<char>, double) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_interneighbor_subpose(*args, **kwargs)¶

Overloaded function.

get_intracomponent_and_interneighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.core.pose.Pose
get_intracomponent_and_interneighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_intracomponent_and_interneighbor_subpose(const class core::pose::Pose &, class std::basic_string<char>, double) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_interneighbor_subs(*args, **kwargs)¶

Overloaded function.

get_intracomponent_and_interneighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_std_string
get_intracomponent_and_interneighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::get_intracomponent_and_interneighbor_subs(const class core::pose::Pose &, class std::basic_string<char>, double) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_intraneighbor_resis(*args, **kwargs)¶

Overloaded function.

get_intracomponent_and_intraneighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_unsigned_long
get_intracomponent_and_intraneighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_intracomponent_and_intraneighbor_resis(const class core::pose::Pose &, class std::basic_string<char>, double) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_intraneighbor_subpose(*args, **kwargs)¶

Overloaded function.

get_intracomponent_and_intraneighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.core.pose.Pose
get_intracomponent_and_intraneighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_intracomponent_and_intraneighbor_subpose(const class core::pose::Pose &, class std::basic_string<char>, double) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_intraneighbor_subs(*args, **kwargs)¶

Overloaded function.

get_intracomponent_and_intraneighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_std_string
get_intracomponent_and_intraneighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::get_intracomponent_and_intraneighbor_subs(const class core::pose::Pose &, class std::basic_string<char>, double) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_neighbor_resis(*args, **kwargs)¶

Overloaded function.

get_intracomponent_and_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_unsigned_long
get_intracomponent_and_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_intracomponent_and_neighbor_resis(const class core::pose::Pose &, class std::basic_string<char>, double) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_neighbor_subpose(*args, **kwargs)¶

Overloaded function.

get_intracomponent_and_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.core.pose.Pose
get_intracomponent_and_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_intracomponent_and_neighbor_subpose(const class core::pose::Pose &, class std::basic_string<char>, double) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_neighbor_subs(*args, **kwargs)¶

Overloaded function.

get_intracomponent_and_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_std_string
get_intracomponent_and_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::get_intracomponent_and_neighbor_subs(const class core::pose::Pose &, class std::basic_string<char>, double) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_resis(*args, **kwargs)¶

Overloaded function.

get_intracomponent_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_unsigned_long
get_intracomponent_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_intracomponent_resis(const class core::pose::Pose &, class std::basic_string<char>, double) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_subpose(*args, **kwargs)¶

Overloaded function.

get_intracomponent_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.core.pose.Pose
get_intracomponent_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_intracomponent_subpose(const class core::pose::Pose &, class std::basic_string<char>, double) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_subs(*args, **kwargs)¶

Overloaded function.

get_intracomponent_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_std_string
get_intracomponent_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::get_intracomponent_subs(const class core::pose::Pose &, class std::basic_string<char>, double) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_jump_name_to_components(pose: pyrosetta.rosetta.core.pose.Pose, jname: str) → pyrosetta.rosetta.utility.vector1_char¶: C++: core::pose::symmetry::get_jump_name_to_components(const class core::pose::Pose &, const class std::basic_string<char> &) –> const class utility::vector1<char, class std::allocator<char> > &

pyrosetta.rosetta.core.pose.symmetry.get_jump_name_to_subunits(pose: pyrosetta.rosetta.core.pose.Pose, jname: str) → pyrosetta.rosetta.utility.vector1_unsigned_long¶: C++: core::pose::symmetry::get_jump_name_to_subunits(const class core::pose::Pose &, const class std::basic_string<char> &) –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

pyrosetta.rosetta.core.pose.symmetry.get_neighbor_resis(*args, **kwargs)¶

Overloaded function.

get_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_unsigned_long
get_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_neighbor_resis(const class core::pose::Pose &, class std::basic_string<char>, double) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_neighbor_subpose(*args, **kwargs)¶

Overloaded function.

get_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.core.pose.Pose
get_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_neighbor_subpose(const class core::pose::Pose &, class std::basic_string<char>, double) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_neighbor_subs(*args, **kwargs)¶

Overloaded function.

get_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_std_string
get_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::get_neighbor_subs(const class core::pose::Pose &, class std::basic_string<char>, double) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_resis(pose: pyrosetta.rosetta.core.pose.Pose, subs: pyrosetta.rosetta.utility.vector1_std_string) → pyrosetta.rosetta.utility.vector1_unsigned_long¶: C++: core::pose::symmetry::get_resis(const class core::pose::Pose &, class utility::vector1<class std::basic_string<char>, class std::allocator<class std::basic_string<char> > >) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_resnum_to_subunit_component(pose: pyrosetta.rosetta.core.pose.Pose, resnum: int) → str¶: C++: core::pose::symmetry::get_resnum_to_subunit_component(const class core::pose::Pose &, const unsigned long &) –> std::string

pyrosetta.rosetta.core.pose.symmetry.get_subpose(pose: pyrosetta.rosetta.core.pose.Pose, subs: pyrosetta.rosetta.utility.vector1_std_string) → pyrosetta.rosetta.core.pose.Pose¶: C++: core::pose::symmetry::get_subpose(const class core::pose::Pose &, class utility::vector1<class std::basic_string<char>, class std::allocator<class std::basic_string<char> > >) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_subunit_name_to_component(pose: pyrosetta.rosetta.core.pose.Pose, vname: str) → str¶: C++: core::pose::symmetry::get_subunit_name_to_component(const class core::pose::Pose &, const class std::basic_string<char> &) –> char

pyrosetta.rosetta.core.pose.symmetry.get_sym_aware_jump_num(pose: pyrosetta.rosetta.core.pose.Pose, jump_num: int) → int¶: C++: core::pose::symmetry::get_sym_aware_jump_num(const class core::pose::Pose &, unsigned long) –> int

pyrosetta.rosetta.core.pose.symmetry.get_symdof_subunits(pose: pyrosetta.rosetta.core.pose.Pose, jname: str) → pyrosetta.rosetta.utility.vector1_unsigned_long¶: C++: core::pose::symmetry::get_symdof_subunits(const class core::pose::Pose &, const class std::basic_string<char> &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_symm_axis(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.numeric.xyzVector_double_t¶: C++: core::pose::symmetry::get_symm_axis(class core::pose::Pose &) –> class numeric::xyzVector<double>

pyrosetta.rosetta.core.pose.symmetry.intracomponent_contact(*args, **kwargs)¶

Overloaded function.

intracomponent_contact(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> bool
intracomponent_contact(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> bool

C++: core::pose::symmetry::intracomponent_contact(const class core::pose::Pose &, class std::basic_string<char>, double) –> bool

pyrosetta.rosetta.core.pose.symmetry.is_mirror_symmetric(pose: pyrosetta.rosetta.core.pose.Pose) → bool¶: C++: core::pose::symmetry::is_mirror_symmetric(const class core::pose::Pose &) –> bool

pyrosetta.rosetta.core.pose.symmetry.is_multicomponent(pose: pyrosetta.rosetta.core.pose.Pose) → bool¶: C++: core::pose::symmetry::is_multicomponent(const class core::pose::Pose &) –> bool

pyrosetta.rosetta.core.pose.symmetry.is_singlecomponent(pose: pyrosetta.rosetta.core.pose.Pose) → bool¶: C++: core::pose::symmetry::is_singlecomponent(const class core::pose::Pose &) –> bool

pyrosetta.rosetta.core.pose.symmetry.is_symmetric(*args, **kwargs)¶

Overloaded function.

is_symmetric(pose: pyrosetta.rosetta.core.pose.Pose) -> bool

C++: core::pose::symmetry::is_symmetric(const class core::pose::Pose &) –> bool

is_symmetric(scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) -> bool

C++: core::pose::symmetry::is_symmetric(const class core::scoring::ScoreFunction &) –> bool

is_symmetric(energies: pyrosetta.rosetta.core.scoring.Energies) -> bool

C++: core::pose::symmetry::is_symmetric(const class core::scoring::Energies &) –> bool

pyrosetta.rosetta.core.pose.symmetry.jump_num_sym_dof(pose: pyrosetta.rosetta.core.pose.Pose, jnum: int) → str¶: C++: core::pose::symmetry::jump_num_sym_dof(const class core::pose::Pose &, const unsigned long &) –> std::string

pyrosetta.rosetta.core.pose.symmetry.make_asymmetric_pose(pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: core::pose::symmetry::make_asymmetric_pose(class core::pose::Pose &) –> void

pyrosetta.rosetta.core.pose.symmetry.make_residue_mask_symmetric(p: pyrosetta.rosetta.core.pose.Pose, msk: pyrosetta.rosetta.utility.vector1_bool) → None¶: C++: core::pose::symmetry::make_residue_mask_symmetric(const class core::pose::Pose &, class utility::vector1<bool, class std::allocator<bool> > &) –> void

pyrosetta.rosetta.core.pose.symmetry.make_score_function_consistent_with_symmetric_state_of_pose(pose: pyrosetta.rosetta.core.pose.Pose, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) → None¶: C++: core::pose::symmetry::make_score_function_consistent_with_symmetric_state_of_pose(const class core::pose::Pose &, class std::shared_ptr<class core::scoring::ScoreFunction> &) –> void

pyrosetta.rosetta.core.pose.symmetry.make_symmetric_movemap(pose: pyrosetta.rosetta.core.pose.Pose, movemap: pyrosetta.rosetta.core.kinematics.MoveMap) → None¶: C++: core::pose::symmetry::make_symmetric_movemap(const class core::pose::Pose &, class core::kinematics::MoveMap &) –> void

pyrosetta.rosetta.core.pose.symmetry.make_symmetric_pdb_info(pose: pyrosetta.rosetta.core.pose.Pose, pdb_info_src: pyrosetta.rosetta.core.pose.PDBInfo, pdb_info_target: pyrosetta.rosetta.core.pose.PDBInfo) → None¶: C++: core::pose::symmetry::make_symmetric_pdb_info(const class core::pose::Pose &, class std::shared_ptr<class core::pose::PDBInfo>, class std::shared_ptr<class core::pose::PDBInfo>) –> void

pyrosetta.rosetta.core.pose.symmetry.make_symmetric_pose(*args, **kwargs)¶

Overloaded function.

make_symmetric_pose(pose: pyrosetta.rosetta.core.pose.Pose, symmetry_info: pyrosetta.rosetta.core.conformation.symmetry.SymmetryInfo) -> None

C++: core::pose::symmetry::make_symmetric_pose(class core::pose::Pose &, class core::conformation::symmetry::SymmetryInfo) –> void

make_symmetric_pose(pose: pyrosetta.rosetta.core.pose.Pose, symmdata: pyrosetta.rosetta.core.conformation.symmetry.SymmData) -> None

C++: core::pose::symmetry::make_symmetric_pose(class core::pose::Pose &, class core::conformation::symmetry::SymmData &) –> void

make_symmetric_pose(pose: pyrosetta.rosetta.core.pose.Pose) -> None
make_symmetric_pose(pose: pyrosetta.rosetta.core.pose.Pose, symmdef_file: str) -> None

C++: core::pose::symmetry::make_symmetric_pose(class core::pose::Pose &, class std::basic_string<char>) –> void

pyrosetta.rosetta.core.pose.symmetry.partition_by_symm_jumps(jump_numbers: pyrosetta.rosetta.utility.vector1_int, ft: pyrosetta.rosetta.core.kinematics.FoldTree, symm_info: pyrosetta.rosetta.core.conformation.symmetry.SymmetryInfo, partner1: ObjexxFCL::FArray1D<bool>) → None¶: C++: core::pose::symmetry::partition_by_symm_jumps(class utility::vector1<int, class std::allocator<int> >, const class core::kinematics::FoldTree &, class std::shared_ptr<const class core::conformation::symmetry::SymmetryInfo>, class ObjexxFCL::FArray1D<bool> &) –> void

pyrosetta.rosetta.core.pose.symmetry.rotate_anchor_to_x_axis(pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: core::pose::symmetry::rotate_anchor_to_x_axis(class core::pose::Pose &) –> void

pyrosetta.rosetta.core.pose.symmetry.sealed_symmetric_fold_tree(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.core.kinematics.FoldTree¶: C++: core::pose::symmetry::sealed_symmetric_fold_tree(class core::pose::Pose &) –> class core::kinematics::FoldTree

pyrosetta.rosetta.core.pose.symmetry.set_asymm_unit_fold_tree(p: pyrosetta.rosetta.core.pose.Pose, f: pyrosetta.rosetta.core.kinematics.FoldTree) → None¶: C++: core::pose::symmetry::set_asymm_unit_fold_tree(class core::pose::Pose &, const class core::kinematics::FoldTree &) –> void

pyrosetta.rosetta.core.pose.symmetry.sym_dof_jump_num(pose: pyrosetta.rosetta.core.pose.Pose, jname: str) → int¶: C++: core::pose::symmetry::sym_dof_jump_num(const class core::pose::Pose &, const class std::basic_string<char> &) –> int

pyrosetta.rosetta.core.pose.symmetry.sym_dof_names(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_std_string¶: C++: core::pose::symmetry::sym_dof_names(const class core::pose::Pose &) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.symmetric_components(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_char¶: C++: core::pose::symmetry::symmetric_components(const class core::pose::Pose &) –> class utility::vector1<char, class std::allocator<char> >

pyrosetta.rosetta.core.pose.symmetry.symmetrize_fold_tree(p: pyrosetta.rosetta.core.pose.Pose, f: pyrosetta.rosetta.core.kinematics.FoldTree) → None¶

Converts an asymmetric foldtree (f) with virtual root into a

symmetric foldtree compatible with symmetric pose (p)

A symmetric pose
An asymmetric foldtree. This foldtree MUST have a virtual root

This function does not require the symm data

C++: core::pose::symmetry::symmetrize_fold_tree(const class core::pose::Pose &, class core::kinematics::FoldTree &) –> void

pyrosetta.rosetta.core.pose.symmetry.symmetry_info(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.core.conformation.symmetry.SymmetryInfo¶: C++: core::pose::symmetry::symmetry_info(const class core::pose::Pose &) –> class std::shared_ptr<const class core::conformation::symmetry::SymmetryInfo>