PositionDdGInfo

Bindings for core::io::PositionDdGInfo namespace

class pyrosetta.rosetta.core.io.PositionDdGInfo.PositionDdGInfo

Bases: pybind11_builtins.pybind11_object

small helper class that stores the ddGs for mutations at a given position. camel case gets weird when trying to write words containing ddG…

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(self: pyrosetta.rosetta.core.io.PositionDdGInfo.PositionDdGInfo, seqpos: int, wt_aa: pyrosetta.rosetta.core.chemical.AA) → None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

add_mutation_ddG(self: pyrosetta.rosetta.core.io.PositionDdGInfo.PositionDdGInfo, aa: pyrosetta.rosetta.core.chemical.AA, ddG: float) → None

C++: core::io::PositionDdGInfo::PositionDdGInfo::add_mutation_ddG(enum core::chemical::AA, double) –> void

assign(self: pyrosetta.rosetta.core.io.PositionDdGInfo.PositionDdGInfo, : pyrosetta.rosetta.core.io.PositionDdGInfo.PositionDdGInfo) → pyrosetta.rosetta.core.io.PositionDdGInfo.PositionDdGInfo

C++: core::io::PositionDdGInfo::PositionDdGInfo::operator=(const class core::io::PositionDdGInfo::PositionDdGInfo &) –> class core::io::PositionDdGInfo::PositionDdGInfo &

mutation_ddGs(self: pyrosetta.rosetta.core.io.PositionDdGInfo.PositionDdGInfo) → pyrosetta.rosetta.std.map_core_chemical_AA_double

C++: core::io::PositionDdGInfo::PositionDdGInfo::mutation_ddGs() const –> const class std::map<enum core::chemical::AA, double, struct std::less<enum core::chemical::AA>, class std::allocator<struct std::pair<const enum core::chemical::AA, double> > > &

seqpos(self: pyrosetta.rosetta.core.io.PositionDdGInfo.PositionDdGInfo) → int

C++: core::io::PositionDdGInfo::PositionDdGInfo::seqpos() const –> unsigned long

wt_aa(self: pyrosetta.rosetta.core.io.PositionDdGInfo.PositionDdGInfo) → pyrosetta.rosetta.core.chemical.AA

C++: core::io::PositionDdGInfo::PositionDdGInfo::wt_aa() const –> enum core::chemical::AA

pyrosetta.rosetta.core.io.PositionDdGInfo.read_ddg_predictions_file(filename: str) → pyrosetta.rosetta.std.map_unsigned_long_std_shared_ptr_core_io_PositionDdGInfo_PositionDdGInfo_t

function that reads in a ddg predictions out file

and returns the info in it as a map of PositionDdGInfo

C++: core::io::PositionDdGInfo::read_ddg_predictions_file(class std::basic_string<char>) –> const class std::map<unsigned long, class std::shared_ptr<class core::io::PositionDdGInfo::PositionDdGInfo>, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, class std::shared_ptr<class core::io::PositionDdGInfo::PositionDdGInfo> > > >