operation

Bindings for core::pack::task::operation namespace

class pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

Apply rotamerSetOperation to only the rotamerSet for the given residue

Tim Jacobs (2011)

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet, resnum: int, rotamer_set_operation: pyrosetta.rosetta.core.pack.rotamer_set.RotamerSetOperation) -> None
3. __init__(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet, arg0: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::AppendResidueRotamerSet::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet, : pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet) → pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet

C++: core::pack::task::operation::AppendResidueRotamerSet::operator=(const class core::pack::task::operation::AppendResidueRotamerSet &) –> class core::pack::task::operation::AppendResidueRotamerSet &

clone(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::AppendResidueRotamerSet::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname() → str

C++: core::pack::task::operation::AppendResidueRotamerSet::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : utility::tag::Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

Used to parse an xml-like tag to load parameters and properties.

C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::AppendResidueRotamerSet::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_resnum(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet, resnum: int) → None

C++: core::pack::task::operation::AppendResidueRotamerSet::set_resnum(unsigned long) –> void

set_rotamer_set_operation(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet, rotamer_operation: pyrosetta.rosetta.core.pack.rotamer_set.RotamerSetOperation) → None

C++: core::pack::task::operation::AppendResidueRotamerSet::set_rotamer_set_operation(class std::shared_ptr<class core::pack::rotamer_set::RotamerSetOperation>) –> void

class pyrosetta.rosetta.core.pack.task.operation.AppendRotamer

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

when a PackerTask is created by the Factory, the RotamerOperation will be given to it

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamer) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamer, rotamer_operation: pyrosetta.rosetta.core.pack.rotamer_set.RotamerOperation) -> None
3. __init__(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamer, arg0: pyrosetta.rosetta.core.pack.task.operation.AppendRotamer) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamer, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::AppendRotamer::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamer, : pyrosetta.rosetta.core.pack.task.operation.AppendRotamer) → pyrosetta.rosetta.core.pack.task.operation.AppendRotamer

C++: core::pack::task::operation::AppendRotamer::operator=(const class core::pack::task::operation::AppendRotamer &) –> class core::pack::task::operation::AppendRotamer &

clone(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamer) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::AppendRotamer::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname() → str

C++: core::pack::task::operation::AppendRotamer::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : utility::tag::Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

Used to parse an xml-like tag to load parameters and properties.

C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::AppendRotamer::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_rotamer_operation(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamer, rotamer_operation: pyrosetta.rosetta.core.pack.rotamer_set.RotamerOperation) → None

C++: core::pack::task::operation::AppendRotamer::set_rotamer_operation(class std::shared_ptr<class core::pack::rotamer_set::RotamerOperation>) –> void

class pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

when a PackerTask is created by the Factory, the RotamerSetOperation will be given to it

Barak Raveh (Dec 2008)

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet, rotamer_set_operation: pyrosetta.rosetta.core.pack.rotamer_set.RotamerSetOperation) -> None
3. __init__(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet, arg0: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::AppendRotamerSet::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet, : pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet) → pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet

C++: core::pack::task::operation::AppendRotamerSet::operator=(const class core::pack::task::operation::AppendRotamerSet &) –> class core::pack::task::operation::AppendRotamerSet &

clone(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::AppendRotamerSet::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname() → str

C++: core::pack::task::operation::AppendRotamerSet::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : utility::tag::Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

Used to parse an xml-like tag to load parameters and properties.

C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::AppendRotamerSet::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_rotamer_set_operation(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet, rotamer_operation: pyrosetta.rosetta.core.pack.rotamer_set.RotamerSetOperation) → None

C++: core::pack::task::operation::AppendRotamerSet::set_rotamer_set_operation(class std::shared_ptr<class core::pack::rotamer_set::RotamerSetOperation>) –> void

class pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

DisallowIfNonnative allows you to define what residues are NOT allowed in packing unless that residue is present in the input. Behaves like RestrictAbsentCanonicalAAS and NOTAA except will allow a resitricted residue at a position if it is there to begin with at the time of Task creation. Will do all residues unless otherwise defined by selection syntax below

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, disallowed_aas: pyrosetta.rosetta.utility.vector1_bool) -> None
3. __init__(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, disallowed_aas: pyrosetta.rosetta.utility.vector1_bool, res_selection: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::DisallowIfNonnative::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, : pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative) → pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative

C++: core::pack::task::operation::DisallowIfNonnative::operator=(const class core::pack::task::operation::DisallowIfNonnative &) –> class core::pack::task::operation::DisallowIfNonnative &

clear(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative) → None

C++: core::pack::task::operation::DisallowIfNonnative::clear() –> void

clone(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::DisallowIfNonnative::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

disallow_aas(*args, **kwargs)

Overloaded function.

1. disallow_aas(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, cannonical_disallowed: pyrosetta.rosetta.utility.vector1_bool) -> None

C++: core::pack::task::operation::DisallowIfNonnative::disallow_aas(const class utility::vector1<bool, class std::allocator<bool> > &) –> void

2. disallow_aas(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, aa_string: str) -> None

C++: core::pack::task::operation::DisallowIfNonnative::disallow_aas(const class std::basic_string<char> &) –> void

keyname() → str

C++: core::pack::task::operation::DisallowIfNonnative::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

C++: core::pack::task::operation::DisallowIfNonnative::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::DisallowIfNonnative::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

restrict_to_residue(*args, **kwargs)

Overloaded function.

1. restrict_to_residue(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, resid: int) -> None

C++: core::pack::task::operation::DisallowIfNonnative::restrict_to_residue(const unsigned long &) –> void

2. restrict_to_residue(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, residues: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: core::pack::task::operation::DisallowIfNonnative::restrict_to_residue(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

class pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

Task Operation for turning on the multi-cool annealer

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer, arg0: pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::EnableMultiCoolAnnealer::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer, : pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer) → pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer

C++: core::pack::task::operation::EnableMultiCoolAnnealer::operator=(const class core::pack::task::operation::EnableMultiCoolAnnealer &) –> class core::pack::task::operation::EnableMultiCoolAnnealer &

clone(self: pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::EnableMultiCoolAnnealer::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname() → str

Return the name used to construct this TaskOperation from an XML file

C++: core::pack::task::operation::EnableMultiCoolAnnealer::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer, tag: utility::tag::Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

Configure from a RosettaScripts XML tag.

C++: core::pack::task::operation::EnableMultiCoolAnnealer::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None

Describe the format of XML file used to initialize this TaskOperation

C++: core::pack::task::operation::EnableMultiCoolAnnealer::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

class pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff(correponding to flag "-extrachi_cutoff <float>")

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff, resid: int, extrachi_cutoff: int) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::ExtraChiCutoff::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff, : pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff) → pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff

C++: core::pack::task::operation::ExtraChiCutoff::operator=(const class core::pack::task::operation::ExtraChiCutoff &) –> class core::pack::task::operation::ExtraChiCutoff &

clone(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::ExtraChiCutoff::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname() → str

C++: core::pack::task::operation::ExtraChiCutoff::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

C++: core::pack::task::operation::ExtraChiCutoff::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::ExtraChiCutoff::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

class pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

ExtraRotamer for a residue. You know, -ex1, -ex2, all that.

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers, arg0: int, arg1: int) -> None

doc

3. __init__(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers, resid: int, chi: int, level: int) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::ExtraRotamers::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers, : pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers) → pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers

C++: core::pack::task::operation::ExtraRotamers::operator=(const class core::pack::task::operation::ExtraRotamers &) –> class core::pack::task::operation::ExtraRotamers &

clone(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::ExtraRotamers::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname() → str

C++: core::pack::task::operation::ExtraRotamers::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

C++: core::pack::task::operation::ExtraRotamers::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::ExtraRotamers::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

class pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

control the extra chi rotamers for all residues

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, arg0: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, : pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric) → pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric

C++: core::pack::task::operation::ExtraRotamersGeneric::operator=(const class core::pack::task::operation::ExtraRotamersGeneric &) –> class core::pack::task::operation::ExtraRotamersGeneric &

clone(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::ExtraRotamersGeneric::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

ex1(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex1(bool) –> void

ex1_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex1_sample_level(enum core::pack::task::ExtraRotSample) –> void

ex1aro(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex1aro(bool) –> void

ex1aro_exposed(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex1aro_exposed(bool) –> void

ex1aro_exposed_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex1aro_exposed_sample_level(enum core::pack::task::ExtraRotSample) –> void

ex1aro_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex1aro_sample_level(enum core::pack::task::ExtraRotSample) –> void

ex2(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex2(bool) –> void

ex2_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex2_sample_level(enum core::pack::task::ExtraRotSample) –> void

ex2aro(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex2aro(bool) –> void

ex2aro_exposed(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex2aro_exposed(bool) –> void

ex2aro_exposed_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex2aro_exposed_sample_level(enum core::pack::task::ExtraRotSample) –> void

ex2aro_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex2aro_sample_level(enum core::pack::task::ExtraRotSample) –> void

ex3(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex3(bool) –> void

ex3_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex3_sample_level(enum core::pack::task::ExtraRotSample) –> void

ex4(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex4(bool) –> void

ex4_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::ex4_sample_level(enum core::pack::task::ExtraRotSample) –> void

exdna_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::exdna_sample_level(enum core::pack::task::ExtraRotSample) –> void

extrachi_cutoff(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: int) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::extrachi_cutoff(unsigned long) –> void

keyname() → str

C++: core::pack::task::operation::ExtraRotamersGeneric::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::ExtraRotamersGeneric::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

sampling_data(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric) → pyrosetta.rosetta.core.pack.task.operation.ExtraRotamerSamplingData

C++: core::pack::task::operation::ExtraRotamersGeneric::sampling_data() const –> const struct core::pack::task::operation::ExtraRotamerSamplingData &

class pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

fills the AUTO behavior for all residues in Task. Useful if a protocol expects AUTO-style resfile, but no resfile present.

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation, arg0: pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::FillAUTOTaskOperation::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation, : pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation) → pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation

C++: core::pack::task::operation::FillAUTOTaskOperation::operator=(const class core::pack::task::operation::FillAUTOTaskOperation &) –> class core::pack::task::operation::FillAUTOTaskOperation &

clone(self: pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::FillAUTOTaskOperation::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname() → str

Return the name used to construct this TaskOperation from an XML file

C++: core::pack::task::operation::FillAUTOTaskOperation::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation, tag: utility::tag::Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

Configure from a RosettaScripts XML tag.

C++: core::pack::task::operation::FillAUTOTaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None

Describe the format of XML file used to initialize this TaskOperation

C++: core::pack::task::operation::FillAUTOTaskOperation::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

class pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

retrieves an OptionCollection from the DataMap.

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection, options: pyrosetta.rosetta.utility.options.OptionCollection) -> None
3. __init__(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection, arg0: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::InitializeFromOptionCollection::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection, : pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection) → pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection

C++: core::pack::task::operation::InitializeFromOptionCollection::operator=(const class core::pack::task::operation::InitializeFromOptionCollection &) –> class core::pack::task::operation::InitializeFromOptionCollection &

clone(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::InitializeFromOptionCollection::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname() → str

C++: core::pack::task::operation::InitializeFromOptionCollection::keyname() –> std::string

options(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection, options: pyrosetta.rosetta.utility.options.OptionCollection) → None

C++: core::pack::task::operation::InitializeFromOptionCollection::options(class std::shared_ptr<const class utility::options::OptionCollection>) –> void

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

C++: core::pack::task::operation::InitializeFromOptionCollection::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::InitializeFromOptionCollection::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

class pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfides

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

prevent disulfides from being repacked; assume disulfides info in Pose is up-to-date

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfides) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfides, arg0: pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfides) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfides, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) → None

apply operations to PackerTask

C++: core::pack::task::operation::NoRepackDisulfides::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfides, : pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfides) → pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfides

C++: core::pack::task::operation::NoRepackDisulfides::operator=(const class core::pack::task::operation::NoRepackDisulfides &) –> class core::pack::task::operation::NoRepackDisulfides &

clone(self: pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfides) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

clone this object

C++: core::pack::task::operation::NoRepackDisulfides::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname() → str

C++: core::pack::task::operation::NoRepackDisulfides::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : utility::tag::Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

Used to parse an xml-like tag to load parameters and properties.

C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None

C++: core::pack::task::operation::NoRepackDisulfides::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

class pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

Class, much like the OperateOnCertainResidues task operation, to apply a particular residue-level task operation on the residues identified by a ResidueSelector (Or a pre-selected subset).

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, arg0: core::pack::task::operation::ResLvlTaskOperation, arg1: core::select::residue_selector::ResidueSelector) -> None

doc

3. __init__(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, : core::pack::task::operation::ResLvlTaskOperation, : core::select::residue_selector::ResidueSelector, flip_subset: bool) -> None
4. __init__(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, : core::pack::task::operation::ResLvlTaskOperation, subset: pyrosetta.rosetta.utility.vector1_bool) -> None
5. __init__(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, arg0: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::OperateOnResidueSubset::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, : pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset) → pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset

C++: core::pack::task::operation::OperateOnResidueSubset::operator=(const class core::pack::task::operation::OperateOnResidueSubset &) –> class core::pack::task::operation::OperateOnResidueSubset &

clone(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::OperateOnResidueSubset::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

flip_subset(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, flip: bool) → None

Flip the subset on apply. False becomes True, True becomes False. Easier to interact with certain RLTOP.

C++: core::pack::task::operation::OperateOnResidueSubset::flip_subset(bool) –> void

keyname() → str

C++: core::pack::task::operation::OperateOnResidueSubset::keyname() –> std::string

op(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, : core::pack::task::operation::ResLvlTaskOperation) → None

sets the ResLvlTaskOperation that will be applied to residues

C++: core::pack::task::operation::OperateOnResidueSubset::op(class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>) –> void

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, : utility::tag::Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

Used to parse an xml-like tag to construct the ResLvlTaskOperation and the ResFilter

C++: core::pack::task::operation::OperateOnResidueSubset::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None

C++: core::pack::task::operation::OperateOnResidueSubset::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

selector(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, : core::select::residue_selector::ResidueSelector) → None

sets the ResidueSelector that will be used to determine which residues to apply the RLTOP to

C++: core::pack::task::operation::OperateOnResidueSubset::selector(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void

subset(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, subset_residues: pyrosetta.rosetta.utility.vector1_bool) → None

sets a specific subset that will be operated on instead of a selector itself.

C++: core::pack::task::operation::OperateOnResidueSubset::subset(const class utility::vector1<bool, class std::allocator<bool> > &) –> void

class pyrosetta.rosetta.core.pack.task.operation.OptCysHG

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

run optH on non-disulfided bonded CYS only; meant to relieve any clashes caused by swapping of CYD->CYS after calling Conformation::detect_disulfides()

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.OptCysHG) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.OptCysHG, arg0: pyrosetta.rosetta.core.pack.task.operation.OptCysHG) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.OptCysHG, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) → None

apply operations to PackerTask

C++: core::pack::task::operation::OptCysHG::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.OptCysHG, : pyrosetta.rosetta.core.pack.task.operation.OptCysHG) → pyrosetta.rosetta.core.pack.task.operation.OptCysHG

C++: core::pack::task::operation::OptCysHG::operator=(const class core::pack::task::operation::OptCysHG &) –> class core::pack::task::operation::OptCysHG &

clone(self: pyrosetta.rosetta.core.pack.task.operation.OptCysHG) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

clone this object

C++: core::pack::task::operation::OptCysHG::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname() → str

C++: core::pack::task::operation::OptCysHG::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : utility::tag::Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

Used to parse an xml-like tag to load parameters and properties.

C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::OptCysHG::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

class pyrosetta.rosetta.core.pack.task.operation.OptH

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

run optH; disallowed positions may be set to prevent optimization for those residues

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.OptH) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.OptH, arg0: pyrosetta.rosetta.core.pack.task.operation.OptH) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.OptH, : pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) → None

apply operations to PackerTask

C++: core::pack::task::operation::OptH::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.OptH, : pyrosetta.rosetta.core.pack.task.operation.OptH) → pyrosetta.rosetta.core.pack.task.operation.OptH

C++: core::pack::task::operation::OptH::operator=(const class core::pack::task::operation::OptH &) –> class core::pack::task::operation::OptH &

clone(self: pyrosetta.rosetta.core.pack.task.operation.OptH) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

clone this object

C++: core::pack::task::operation::OptH::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

disallow_resid(self: pyrosetta.rosetta.core.pack.task.operation.OptH, resid: int) → None

prevent a position from being optimized

C++: core::pack::task::operation::OptH::disallow_resid(const unsigned long) –> void

flip_HNQ(self: pyrosetta.rosetta.core.pack.task.operation.OptH, flag: bool) → None

allow sidechain flips of HNQ? (default false)

C++: core::pack::task::operation::OptH::flip_HNQ(const bool) –> void

include_current(self: pyrosetta.rosetta.core.pack.task.operation.OptH, flag: bool) → None

include current sidechain rotamers? (default true)

C++: core::pack::task::operation::OptH::include_current(const bool) –> void

init_from_comand_line(self: pyrosetta.rosetta.core.pack.task.operation.OptH, flag: bool) → None

init flags from command line? (default true)

C++: core::pack::task::operation::OptH::init_from_comand_line(const bool) –> void

keyname() → str

C++: core::pack::task::operation::OptH::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : utility::tag::Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

Used to parse an xml-like tag to load parameters and properties.

C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::OptH::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

use_multicool_annealer(self: pyrosetta.rosetta.core.pack.task.operation.OptH, flag: bool) → None

use multicool annealer? (default false)

C++: core::pack::task::operation::OptH::use_multicool_annealer(const bool) –> void

class pyrosetta.rosetta.core.pack.task.operation.PreventRepacking

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

PreventRepacking allows you to prevent repacking (NATRO behavior) through the Factory. Useful if you do not know the residue numbers when the resfile is created. Note that this is unlike RestrictToRepacking; you have to specify which residues. If PreventRepacking worked on the entire Task you’d have a do-nothing task.

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepacking) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepacking, arg0: pyrosetta.rosetta.core.pack.task.operation.PreventRepacking) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepacking, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::PreventRepacking::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepacking, : pyrosetta.rosetta.core.pack.task.operation.PreventRepacking) → pyrosetta.rosetta.core.pack.task.operation.PreventRepacking

C++: core::pack::task::operation::PreventRepacking::operator=(const class core::pack::task::operation::PreventRepacking &) –> class core::pack::task::operation::PreventRepacking &

clear(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepacking) → None

C++: core::pack::task::operation::PreventRepacking::clear() –> void

clone(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepacking) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::PreventRepacking::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

include_residue(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepacking, resid: int) → None

C++: core::pack::task::operation::PreventRepacking::include_residue(unsigned long) –> void

keyname() → str

C++: core::pack::task::operation::PreventRepacking::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepacking, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

C++: core::pack::task::operation::PreventRepacking::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::PreventRepacking::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

class pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents

Bases: pyrosetta.rosetta.core.pack.task.operation.ReadResfile

written by flo, feb 2011 class that can apply a resfile to a pose that had its length changed at some point in a protocol. A LengthEventCollector must be set in the pose’s observer cache for this to work properly

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents, : str) -> None
3. __init__(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents, arg0: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents, pose: pyrosetta.rosetta.core.pose.Pose, ptask: pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::ReadResfileAndObeyLengthEvents::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents, : pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents) → pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents

C++: core::pack::task::operation::ReadResfileAndObeyLengthEvents::operator=(const class core::pack::task::operation::ReadResfileAndObeyLengthEvents &) –> class core::pack::task::operation::ReadResfileAndObeyLengthEvents &

cache_resfile(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile) → None

Read in the resfile and store it, so that it

doesn’t have to be read over and over again at apply time.

C++: core::pack::task::operation::ReadResfile::cache_resfile() –> void

clone(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::ReadResfileAndObeyLengthEvents::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

default_filename(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile) → None

queries options system for resfile name

C++: core::pack::task::operation::ReadResfile::default_filename() –> void

filename(*args, **kwargs)

Overloaded function.

1. filename(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile, filename: str) -> None

C++: core::pack::task::operation::ReadResfile::filename(const class std::basic_string<char> &) –> void

2. filename(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile) -> str

C++: core::pack::task::operation::ReadResfile::filename() const –> const std::string &

keyname() → str

C++: core::pack::task::operation::ReadResfileAndObeyLengthEvents::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

C++: core::pack::task::operation::ReadResfileAndObeyLengthEvents::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::ReadResfileAndObeyLengthEvents::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

resfile_commands(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents, resfile_seqpos: int, contents: pyrosetta.rosetta.core.pack.task.ResfileContents, ptask: pyrosetta.rosetta.core.pack.task.PackerTask) → pyrosetta.rosetta.std.list_std_shared_ptr_const_core_pack_task_ResfileCommand_std_allocator_std_shared_ptr_const_core_pack_task_ResfileCommand_t

C++: core::pack::task::operation::ReadResfileAndObeyLengthEvents::resfile_commands(const unsigned long, const class core::pack::task::ResfileContents &, const class core::pack::task::PackerTask &) const –> const class std::list<class std::shared_ptr<const class core::pack::task::ResfileCommand>, class std::allocator<class std::shared_ptr<const class core::pack::task::ResfileCommand> > > &

residue_selector(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile) → core::select::residue_selector::ResidueSelector

Get the residue selector, if one exists. (Const-access owning pointer).

Returns NULL pointer if one does not.

Vikram K. Mulligan (vmullig.edu).

C++: core::pack::task::operation::ReadResfile::residue_selector() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>

set_cached_resfile(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile, file_contents: str) → None

Allows code to provide resfile contents, so that this TaskOperation doesn’t directly have to

handle file i/o. Handly on large systems (e.g. Blue Gene), where one might only want the master process to read a file.

C++: core::pack::task::operation::ReadResfile::set_cached_resfile(const class std::basic_string<char> &) –> void

set_residue_selector(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile, selector_in: core::select::residue_selector::ResidueSelector) → None

Set the residue selector.

The input selector is cloned and the clone is stored.

Vikram K. Mulligan (vmullig.edu).

C++: core::pack::task::operation::ReadResfile::set_residue_selector(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void

xml_schema_attributes() → pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t

C++: core::pack::task::operation::ReadResfile::xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >

class pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator

Bases: pybind11_builtins.pybind11_object

The ResFilterCreator class’s responsibilities are to create on demand a new ResFilter class. The ResFilterCreator must register itself with the ResFilterFactory at load time (before main() begins) so that the ResFilterFactory is ready to start creating ResFilters by the time any protocol requests one.

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(self: pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator) → None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator, : pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator) → pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator

C++: core::pack::task::operation::ResFilterCreator::operator=(const class core::pack::task::operation::ResFilterCreator &) –> class core::pack::task::operation::ResFilterCreator &

create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator) → pyrosetta.rosetta.core.pack.task.operation.ResFilter

Instantiate a new ResFilter

C++: core::pack::task::operation::ResFilterCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>

keyname(self: pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator) → str

C++: core::pack::task::operation::ResFilterCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator, xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::ResFilterCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator

Bases: pybind11_builtins.pybind11_object

The ResLvlTaskOperationCreator class’s responsibilities are to create on demand a new ResLvlTaskOperation class. The ResLvlTaskOperationCreator must register itself with the ResLvlTaskOperationFactory at load time (before main() begins) so that the ResLvlTaskOperationFactory is ready to start creating ResLvlTaskOperations by the time any protocol requests one.

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator, arg0: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator, : pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) → pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator

C++: core::pack::task::operation::ResLvlTaskOperationCreator::operator=(const class core::pack::task::operation::ResLvlTaskOperationCreator &) –> class core::pack::task::operation::ResLvlTaskOperationCreator &

create_res_level_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) → pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation

Instantiate a new ResLvlTaskOperation

C++: core::pack::task::operation::ResLvlTaskOperationCreator::create_res_level_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>

keyname(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) → str

C++: core::pack::task::operation::ResLvlTaskOperationCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator, xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::ResLvlTaskOperationCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty

Bases: pyrosetta.rosetta.core.pack.task.operation.ResFilter

__call__(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty, : pyrosetta.rosetta.core.pose.Pose, : int) → bool

C++: core::pack::task::operation::ResidueHasProperty::operator()(const class core::pose::Pose &, unsigned long) const –> bool

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty, : str) -> None
3. __init__(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty, arg0: pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty, : pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty) → pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty

C++: core::pack::task::operation::ResidueHasProperty::operator=(const class core::pack::task::operation::ResidueHasProperty &) –> class core::pack::task::operation::ResidueHasProperty &

clone(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty) → pyrosetta.rosetta.core.pack.task.operation.ResFilter

C++: core::pack::task::operation::ResidueHasProperty::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>

get_xml_schema_attributes() → pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t

C++: core::pack::task::operation::ResidueHasProperty::get_xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >

keyname() → str

C++: core::pack::task::operation::ResidueHasProperty::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty, : utility::tag::Tag) → None

C++: core::pack::task::operation::ResidueHasProperty::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void

property(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty) → str

C++: core::pack::task::operation::ResidueHasProperty::property() const –> const std::string &

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::ResidueHasProperty::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

class pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking) → None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::RestrictResidueToRepacking::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking, : pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking) → pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking

C++: core::pack::task::operation::RestrictResidueToRepacking::operator=(const class core::pack::task::operation::RestrictResidueToRepacking &) –> class core::pack::task::operation::RestrictResidueToRepacking &

clear(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking) → None

C++: core::pack::task::operation::RestrictResidueToRepacking::clear() –> void

clone(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::RestrictResidueToRepacking::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

include_residue(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking, resid: int) → None

C++: core::pack::task::operation::RestrictResidueToRepacking::include_residue(unsigned long) –> void

keyname() → str

C++: core::pack::task::operation::RestrictResidueToRepacking::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

C++: core::pack::task::operation::RestrictResidueToRepacking::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::RestrictResidueToRepacking::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

class pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

RestrictYSDesign restricts positions to a binary Tyr/Ser alphabet

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign, arg0: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign) -> None
3. __init__(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign, resids: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign, : pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::RestrictYSDesign::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign, : pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign) → pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign

C++: core::pack::task::operation::RestrictYSDesign::operator=(const class core::pack::task::operation::RestrictYSDesign &) –> class core::pack::task::operation::RestrictYSDesign &

clone(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::RestrictYSDesign::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

include_gly(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign, gly: bool) → None

C++: core::pack::task::operation::RestrictYSDesign::include_gly(const bool) –> void

include_resid(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign, resid: int) → None

C++: core::pack::task::operation::RestrictYSDesign::include_resid(const unsigned long) –> void

keyname() → str

C++: core::pack::task::operation::RestrictYSDesign::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : utility::tag::Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

Used to parse an xml-like tag to load parameters and properties.

C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::RestrictYSDesign::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

class pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion

Bases: pyrosetta.rosetta.core.pack.task.operation.TaskOperation

rotamer explosion for a residue

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion, resid: int, sample_level: pyrosetta.rosetta.core.pack.task.ExtraRotSample, chi: int) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

apply(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) → None

C++: core::pack::task::operation::RotamerExplosion::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion, : pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion) → pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion

C++: core::pack::task::operation::RotamerExplosion::operator=(const class core::pack::task::operation::RotamerExplosion &) –> class core::pack::task::operation::RotamerExplosion &

chi(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion, c: int) → None

C++: core::pack::task::operation::RotamerExplosion::chi(const unsigned long) –> void

clone(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

C++: core::pack::task::operation::RotamerExplosion::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname() → str

C++: core::pack::task::operation::RotamerExplosion::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

C++: core::pack::task::operation::RotamerExplosion::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: core::pack::task::operation::RotamerExplosion::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

resid(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion, r: int) → None

C++: core::pack::task::operation::RotamerExplosion::resid(const unsigned long) –> void

sample_level(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion, s: pyrosetta.rosetta.core.pack.task.ExtraRotSample) → None

C++: core::pack::task::operation::RotamerExplosion::sample_level(const enum core::pack::task::ExtraRotSample) –> void

class pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator

Bases: pybind11_builtins.pybind11_object

The TaskOperationCreator class’s responsibilities are to create on demand a new TaskOperation class. The TaskOperationCreator must register itself with the TaskOperationFactory at load time (before main() begins) so that the TaskOperationFactory is ready to start creating TaskOperations by the time any protocol requests one.

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) -> None
2. __init__(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator, arg0: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator, : pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) → pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator

C++: core::pack::task::operation::TaskOperationCreator::operator=(const class core::pack::task::operation::TaskOperationCreator &) –> class core::pack::task::operation::TaskOperationCreator &

create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation

Instantiate a new TaskOperation

C++: core::pack::task::operation::TaskOperationCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) → str

C++: core::pack::task::operation::TaskOperationCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator, xsd: utility::tag::XMLSchemaDefinition) → None

C++: core::pack::task::operation::TaskOperationCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

pyrosetta.rosetta.core.pack.task.operation.complex_type_name_for_res_filter(res_filter_name: str) → str

C++: core::pack::task::operation::complex_type_name_for_res_filter(const class std::basic_string<char> &) –> std::string

pyrosetta.rosetta.core.pack.task.operation.complex_type_name_for_res_lvl_task_op(res_lvl_task_op_name: str) → str

C++: core::pack::task::operation::complex_type_name_for_res_lvl_task_op(const class std::basic_string<char> &) –> std::string

pyrosetta.rosetta.core.pack.task.operation.complex_type_name_for_task_op(task_op_name: str) → str

C++: core::pack::task::operation::complex_type_name_for_task_op(const class std::basic_string<char> &) –> std::string

pyrosetta.rosetta.core.pack.task.operation.parse_rotamer_sampling_data(tag: pyrosetta.rosetta.utility.tag.Tag, sampling_data: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamerSamplingData) → None

Initialize rotamer sampling data based on the options (attributes) in an input Tag.

C++: core::pack::task::operation::parse_rotamer_sampling_data(class std::shared_ptr<const class utility::tag::Tag>, struct core::pack::task::operation::ExtraRotamerSamplingData &) –> void

pyrosetta.rosetta.core.pack.task.operation.res_filter_schema_w_attributes(*args, **kwargs)

Overloaded function.

1. res_filter_schema_w_attributes(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition, res_filter_name: str, attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) -> None
2. res_filter_schema_w_attributes(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition, res_filter_name: str, attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t, description: str) -> None

C++: core::pack::task::operation::res_filter_schema_w_attributes(class utility::tag::XMLSchemaDefinition &, const class std::basic_string<char> &, const class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &, const class std::basic_string<char> &) –> void

pyrosetta.rosetta.core.pack.task.operation.res_lvl_task_op_schema_empty(*args, **kwargs)

Overloaded function.

1. res_lvl_task_op_schema_empty(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition, task_op_name: str) -> None
2. res_lvl_task_op_schema_empty(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition, task_op_name: str, description: str) -> None

C++: core::pack::task::operation::res_lvl_task_op_schema_empty(class utility::tag::XMLSchemaDefinition &, const class std::basic_string<char> &, const class std::basic_string<char> &) –> void

pyrosetta.rosetta.core.pack.task.operation.res_lvl_task_op_schema_w_attributes(*args, **kwargs)

Overloaded function.

1. res_lvl_task_op_schema_w_attributes(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition, task_op_name: str, attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) -> None
2. res_lvl_task_op_schema_w_attributes(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition, task_op_name: str, attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t, description: str) -> None

C++: core::pack::task::operation::res_lvl_task_op_schema_w_attributes(class utility::tag::XMLSchemaDefinition &, const class std::basic_string<char> &, const class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &, const class std::basic_string<char> &) –> void

pyrosetta.rosetta.core.pack.task.operation.rotamer_sampling_data_xml_schema_attributes(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t

Return the list of XML schema attributes that are read by the parse_rotamer_sampling_data

function.

C++: core::pack::task::operation::rotamer_sampling_data_xml_schema_attributes(class utility::tag::XMLSchemaDefinition &) –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >

pyrosetta.rosetta.core.pack.task.operation.set_rotamer_sampling_data_for_RLT(sampling_data: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamerSamplingData, res_task: pyrosetta.rosetta.core.pack.task.ResidueLevelTask) → None

C++: core::pack::task::operation::set_rotamer_sampling_data_for_RLT(const struct core::pack::task::operation::ExtraRotamerSamplingData &, class core::pack::task::ResidueLevelTask &) –> void

pyrosetta.rosetta.core.pack.task.operation.task_op_schema_empty(*args, **kwargs)

Overloaded function.

1. task_op_schema_empty(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition, task_op_name: str) -> None
2. task_op_schema_empty(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition, task_op_name: str, description: str) -> None

C++: core::pack::task::operation::task_op_schema_empty(class utility::tag::XMLSchemaDefinition &, const class std::basic_string<char> &, const class std::basic_string<char> &) –> void

pyrosetta.rosetta.core.pack.task.operation.task_op_schema_w_attributes(*args, **kwargs)

Overloaded function.

1. task_op_schema_w_attributes(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition, task_op_name: str, attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) -> None
2. task_op_schema_w_attributes(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition, task_op_name: str, attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t, description: str) -> None

C++: core::pack::task::operation::task_op_schema_w_attributes(class utility::tag::XMLSchemaDefinition &, const class std::basic_string<char> &, const class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &, const class std::basic_string<char> &) –> void