gen

Bindings for core::fragment::picking_old::vall::gen namespace

class pyrosetta.rosetta.core.fragment.picking_old.vall.gen.LengthGen

Bases: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen

the default constant length fragment Vall ExtentGenerator

assumes that Pages in the Book are stored in a container

capable of returning a RandomAccessIterator, such as std::vector

__call__(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.LengthGen, extent_begin: __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue const*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >, section_end: __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue const*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >) → pyrosetta.rosetta.core.fragment.picking_old.concepts.Extent___gnu_cxx___normal_iterator_const_core_fragment_picking_old_vall_VallResidue_*_std_vector_core_fragment_picking_old_vall_VallResidue_std_allocator_core_fragment_picking_old_vall_VallResidue_t

return the desired fragment extent w/requested fragment size

valid (true) extent if the end of the extent does not go past the

section_end, invalid (false) extent otherwise

we assume VallResidueIterator is a type of RandomAccessIterator, such as

those used in std::vector

C++: core::fragment::picking_old::vall::gen::LengthGen::operator()(class __gnu_cxx::__normal_iterator<const class core::fragment::picking_old::vall::VallResidue *, class std::vector<class core::fragment::picking_old::vall::VallResidue, class std::allocator<class core::fragment::picking_old::vall::VallResidue> > >, class __gnu_cxx::__normal_iterator<const class core::fragment::picking_old::vall::VallResidue *, class std::vector<class core::fragment::picking_old::vall::VallResidue, class std::allocator<class core::fragment::picking_old::vall::VallResidue> > >) const –> struct core::fragment::picking_old::concepts::Extent<class __gnu_cxx::__normal_iterator<const class core::fragment::picking_old::vall::VallResidue *, class std::vector<class core::fragment::picking_old::vall::VallResidue, class std::allocator<class core::fragment::picking_old::vall::VallResidue> > > >

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.LengthGen) -> None
2. __init__(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.LengthGen, frag_size: int) -> None
3. __init__(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.LengthGen, arg0: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.LengthGen) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.LengthGen, rval: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.LengthGen) → pyrosetta.rosetta.core.fragment.picking_old.vall.gen.LengthGen

copy assignment

C++: core::fragment::picking_old::vall::gen::LengthGen::operator=(const class core::fragment::picking_old::vall::gen::LengthGen &) –> class core::fragment::picking_old::vall::gen::LengthGen &

clone(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.LengthGen) → pyrosetta.rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen

clone this object

C++: core::fragment::picking_old::vall::gen::LengthGen::clone() const –> class std::shared_ptr<class core::fragment::picking_old::vall::gen::VallFragmentGen>

class pyrosetta.rosetta.core.fragment.picking_old.vall.gen.SecStructGen

Bases: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen

Generator that requires fragments to have a specific secondary

structure string.

assumes that Pages in the Book are stored in a container

capable of returning a RandomAccessIterator, such as std::vector

__call__(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.SecStructGen, extent_begin: __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue const*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >, section_end: __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue const*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >) → pyrosetta.rosetta.core.fragment.picking_old.concepts.Extent___gnu_cxx___normal_iterator_const_core_fragment_picking_old_vall_VallResidue_*_std_vector_core_fragment_picking_old_vall_VallResidue_std_allocator_core_fragment_picking_old_vall_VallResidue_t

return the desired fragment extent w/ length equal to the

secondary structure string

Valid (true) extent if the extent has exactly the required

secondary structure string and the end of the extent does not go past section_end. Invalid (false) extent otherwise.

we assume VallResidueIterator is a type of RandomAccessIterator, such as

those used in std::vector

C++: core::fragment::picking_old::vall::gen::SecStructGen::operator()(class __gnu_cxx::__normal_iterator<const class core::fragment::picking_old::vall::VallResidue *, class std::vector<class core::fragment::picking_old::vall::VallResidue, class std::allocator<class core::fragment::picking_old::vall::VallResidue> > >, class __gnu_cxx::__normal_iterator<const class core::fragment::picking_old::vall::VallResidue *, class std::vector<class core::fragment::picking_old::vall::VallResidue, class std::allocator<class core::fragment::picking_old::vall::VallResidue> > >) const –> struct core::fragment::picking_old::concepts::Extent<class __gnu_cxx::__normal_iterator<const class core::fragment::picking_old::vall::VallResidue *, class std::vector<class core::fragment::picking_old::vall::VallResidue, class std::allocator<class core::fragment::picking_old::vall::VallResidue> > > >

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.SecStructGen) -> None
2. __init__(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.SecStructGen, ss: str) -> None
3. __init__(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.SecStructGen, arg0: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.SecStructGen) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.SecStructGen, rval: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.SecStructGen) → pyrosetta.rosetta.core.fragment.picking_old.vall.gen.SecStructGen

copy assignment

C++: core::fragment::picking_old::vall::gen::SecStructGen::operator=(const class core::fragment::picking_old::vall::gen::SecStructGen &) –> class core::fragment::picking_old::vall::gen::SecStructGen &

clone(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.SecStructGen) → pyrosetta.rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen

clone this object

C++: core::fragment::picking_old::vall::gen::SecStructGen::clone() const –> class std::shared_ptr<class core::fragment::picking_old::vall::gen::VallFragmentGen>

class pyrosetta.rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen

Bases: pybind11_builtins.pybind11_object

base class Vall ExtentGenerator

__call__(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen, extent_begin: __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue const*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >, section_end: __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue const*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >) → pyrosetta.rosetta.core.fragment.picking_old.concepts.Extent___gnu_cxx___normal_iterator_const_core_fragment_picking_old_vall_VallResidue_*_std_vector_core_fragment_picking_old_vall_VallResidue_std_allocator_core_fragment_picking_old_vall_VallResidue_t

return the desired fragment extent

valid (true) extent if extent will be evaluated, invalid

(false) extent otherwise

C++: core::fragment::picking_old::vall::gen::VallFragmentGen::operator()(class __gnu_cxx::__normal_iterator<const class core::fragment::picking_old::vall::VallResidue *, class std::vector<class core::fragment::picking_old::vall::VallResidue, class std::allocator<class core::fragment::picking_old::vall::VallResidue> > >, class __gnu_cxx::__normal_iterator<const class core::fragment::picking_old::vall::VallResidue *, class std::vector<class core::fragment::picking_old::vall::VallResidue, class std::allocator<class core::fragment::picking_old::vall::VallResidue> > >) const –> struct core::fragment::picking_old::concepts::Extent<class __gnu_cxx::__normal_iterator<const class core::fragment::picking_old::vall::VallResidue *, class std::vector<class core::fragment::picking_old::vall::VallResidue, class std::allocator<class core::fragment::picking_old::vall::VallResidue> > > >

__delattr__

Implement delattr(self, name).

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen) -> None
2. __init__(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen, arg0: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen) -> None

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

assign(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen, rval: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen) → pyrosetta.rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen

copy assignment

C++: core::fragment::picking_old::vall::gen::VallFragmentGen::operator=(const class core::fragment::picking_old::vall::gen::VallFragmentGen &) –> class core::fragment::picking_old::vall::gen::VallFragmentGen &

clone(self: pyrosetta.rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen) → pyrosetta.rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen

clone this object

C++: core::fragment::picking_old::vall::gen::VallFragmentGen::clone() const –> class std::shared_ptr<class core::fragment::picking_old::vall::gen::VallFragmentGen>