Index – Z

z (pyrosetta.rosetta.basic.gpu.float4 property) (pyrosetta.rosetta.basic.sampling.orientations.Quaternion property) (pyrosetta.rosetta.core.io.AtomInformation property) (pyrosetta.rosetta.core.pose.rna.Atom_Bin property) (pyrosetta.rosetta.core.scoring.atomic_depth.point3d property) (pyrosetta.rosetta.core.scoring.packstat.SimplePDB_Atom property) (pyrosetta.rosetta.core.scoring.PQR property) (pyrosetta.rosetta.core.scoring.sc.Atom property) (pyrosetta.rosetta.numeric.xyzVector_double_t property) (pyrosetta.rosetta.numeric.xyzVector_float_t property) (pyrosetta.rosetta.numeric.xyzVector_int_t property) (pyrosetta.rosetta.numeric.xyzVector_unsigned_long_t property) (pyrosetta.rosetta.protocols.pockets.CCluster.Cxyz property) (pyrosetta.rosetta.protocols.pockets.PCluster.Cxyz property) (pyrosetta.rosetta.protocols.simple_filters.Quat property) Z (pyrosetta.rosetta.protocols.sparta.PDB_Entry property) z (pyrosetta.rosetta.RDGeom.Point3D property) z() (in module pyrosetta.rosetta.numeric.crick_equations) (pyrosetta.rosetta.core.fragment.BBTorsionAndAnglesSRFD method) (pyrosetta.rosetta.core.fragment.BBTorsionSRFD method) (pyrosetta.rosetta.core.fragment.IndependentBBTorsionSRFD method) (pyrosetta.rosetta.core.fragment.picking_old.vall.VallResidue method) (pyrosetta.rosetta.core.kinematics.tree.Atom method) (pyrosetta.rosetta.core.kinematics.tree.Atom_ method) (pyrosetta.rosetta.core.kinematics.tree.BondedAtom method) (pyrosetta.rosetta.core.kinematics.tree.JumpAtom method) (pyrosetta.rosetta.core.scoring.packing.Ball method) (pyrosetta.rosetta.numeric.geometry.hashing.Ball method) (pyrosetta.rosetta.numeric.Py_xyzTransform_double method) (pyrosetta.rosetta.numeric.Quaternion_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_float_t method) (pyrosetta.rosetta.numeric.xyzTriple_unsigned_long_t method) (pyrosetta.rosetta.protocols.frag_picker.VallResidue method) (pyrosetta.rosetta.protocols.stepwise.sampler.rigid_body.EulerAngles method) z_ (pyrosetta.rosetta.numeric.geometry.hashing.Ball property) (pyrosetta.rosetta.numeric.urs_Quat property) Z_ANGLE_DOF (pyrosetta.rosetta.core.conformation.symmetry.dof_type attribute) z_axis_dist() (in module pyrosetta.rosetta.protocols.dna) z_axis_only (pyrosetta.rosetta.core.scoring.MultipoleAxisType attribute) Z_BUNDLE() (in module pyrosetta.rosetta.numeric.crick_equations) Z_DOF (pyrosetta.rosetta.core.conformation.symmetry.dof_type attribute) z_max (pyrosetta.rosetta.protocols.hotspot_hashing.CartesianSearchPattern property) z_min (pyrosetta.rosetta.protocols.hotspot_hashing.CartesianSearchPattern property) z_rotation_matrix() (in module pyrosetta.rosetta.numeric) z_rotation_matrix_degrees() (in module pyrosetta.rosetta.numeric) z_sampling (pyrosetta.rosetta.protocols.hotspot_hashing.CartesianSearchPattern property) z_squared() (pyrosetta.rosetta.numeric.Quaternion_double_t method) z_then_bisector (pyrosetta.rosetta.core.scoring.MultipoleAxisType attribute) z_then_x (pyrosetta.rosetta.core.scoring.MultipoleAxisType attribute) Z_TURN (pyrosetta.rosetta.core.scoring.rna.RNA_MotifType attribute) z_values() (pyrosetta.rosetta.protocols.stepwise.sampler.rigid_body.RigidBodyStepWiseSamplerValueRange method) zaxis() (pyrosetta.rosetta.numeric.HomogeneousTransform_Double method) (pyrosetta.rosetta.numeric.HomogeneousTransform_double_t method) zdim() (pyrosetta.rosetta.core.pose.xyzStripeHashPose method) (pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHash method) (pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_double_t method) (pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_float method) (pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_float_t method) (pyrosetta.rosetta.protocols.sic_dock.xyzStripeHashPoseWithMeta method) zdir (pyrosetta.rosetta.core.scoring.rna.chemical_shift.atomitem attribute) Zero (pyrosetta.rosetta.core.chemical.gasteiger.GasteigerAtomTypeData attribute) (pyrosetta.rosetta.core.chemical.gasteiger.GasteigerAtomTypeData.PiContributionType attribute) ZERO (pyrosetta.rosetta.protocols.match.ProbeRadius attribute) ZERO() (in module pyrosetta.rosetta.core.kinematics) zero() (pyrosetta.rosetta.core.grid.CartGrid_double_t method) (pyrosetta.rosetta.core.grid.CartGrid_int_t method) (pyrosetta.rosetta.core.pack.interaction_graph.DotSphere method) (pyrosetta.rosetta.core.pack.interaction_graph.RotamerDots method) (pyrosetta.rosetta.core.pack.interaction_graph.RotamerDotsCache method) (pyrosetta.rosetta.core.pose.rna.RNA_DataInfo method) (pyrosetta.rosetta.core.pose.rna.RNA_RawBaseBaseInfo method) (pyrosetta.rosetta.core.scoring.EMapVector method) (pyrosetta.rosetta.core.scoring.sc.Atom method) (pyrosetta.rosetta.numeric.NumericTraits_double_t static method) (pyrosetta.rosetta.numeric.NumericTraits_float_t static method) (pyrosetta.rosetta.numeric.NumericTraits_long_double_t static method) (pyrosetta.rosetta.numeric.xyzMatrix_double_t method) (pyrosetta.rosetta.numeric.xyzMatrix_float_t method) (pyrosetta.rosetta.numeric.xyzTriple_unsigned_long_t method) (pyrosetta.rosetta.numeric.xyzVector_double_t method) (pyrosetta.rosetta.numeric.xyzVector_float_t method) (pyrosetta.rosetta.numeric.xyzVector_int_t method) (pyrosetta.rosetta.numeric.xyzVector_unsigned_long_t method) zero_atom_derivative_vectors() (pyrosetta.rosetta.core.pack.scmin.AtomTreeSCMinMinimizerMap method) (pyrosetta.rosetta.core.pack.scmin.CartSCMinMinimizerMap method) (pyrosetta.rosetta.core.pack.scmin.SCMinMinimizerMap method) zero_occ_for_deleted_atoms() (pyrosetta.rosetta.protocols.constel.SingResCnlCrea static method) zero_one_body_energies() (pyrosetta.rosetta.core.pack.interaction_graph.DensePDNode method) (pyrosetta.rosetta.core.pack.interaction_graph.DoubleDensePDNode method) (pyrosetta.rosetta.core.pack.interaction_graph.DoubleLazyNode method) (pyrosetta.rosetta.core.pack.interaction_graph.FASTERNode method) (pyrosetta.rosetta.core.pack.interaction_graph.FixedBBNode method) (pyrosetta.rosetta.core.pack.interaction_graph.LazyNode method) (pyrosetta.rosetta.core.pack.interaction_graph.LinearMemNode method) (pyrosetta.rosetta.core.pack.interaction_graph.NodeBase method) (pyrosetta.rosetta.core.pack.interaction_graph.OnTheFlyNode method) (pyrosetta.rosetta.core.pack.interaction_graph.PDNode method) (pyrosetta.rosetta.core.pack.interaction_graph.PrecomputedPairEnergiesNode method) (pyrosetta.rosetta.core.pack.interaction_graph.SymmLinearMemNode method) (pyrosetta.rosetta.core.pack.interaction_graph.SymmMinimalistNode method) (pyrosetta.rosetta.core.pack.interaction_graph.SymmOnTheFlyNode method) (pyrosetta.rosetta.protocols.flexpack.interaction_graph.FlexbbNode method) (pyrosetta.rosetta.protocols.flexpack.interaction_graph.MinimalistFlexbbNode method) (pyrosetta.rosetta.protocols.flexpack.interaction_graph.OTFFlexbbNode method) zero_one_body_energies_for_node() (pyrosetta.rosetta.core.pack.hbonds.HBondGraphInitializerIG method) (pyrosetta.rosetta.core.pack.interaction_graph.DensePDInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.DoubleDensePDInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.DoubleLazyInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.FASTERInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.FixedBBInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.InteractionGraphBase method) (pyrosetta.rosetta.core.pack.interaction_graph.LazyInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.LinearMemoryInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.OnTheFlyInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.PDInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.PrecomputedPairEnergiesInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.SymmLinearMemoryInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.SymmMinimalistInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.SymmOnTheFlyInteractionGraph method) (pyrosetta.rosetta.protocols.flexpack.interaction_graph.FlexbbInteractionGraph method) (pyrosetta.rosetta.protocols.flexpack.interaction_graph.MinimalistFlexbbInteractionGraph method) (pyrosetta.rosetta.protocols.flexpack.interaction_graph.OTFFlexbbInteractionGraph method) (pyrosetta.rosetta.protocols.flexpack.interaction_graph.PrecomputedFlexbbInteractionGraph method) zero_one_body_energy() (pyrosetta.rosetta.core.pack.interaction_graph.DoubleLazyNode method) (pyrosetta.rosetta.core.pack.interaction_graph.LazyNode method) (pyrosetta.rosetta.core.pack.interaction_graph.LinearMemNode method) (pyrosetta.rosetta.core.pack.interaction_graph.OnTheFlyNode method) (pyrosetta.rosetta.core.pack.interaction_graph.SymmLinearMemNode method) (pyrosetta.rosetta.core.pack.interaction_graph.SymmMinimalistNode method) (pyrosetta.rosetta.core.pack.interaction_graph.SymmOnTheFlyNode method) zero_one_body_energy_for_node_state() (pyrosetta.rosetta.core.pack.interaction_graph.DoubleLazyInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.LazyInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.LinearMemoryInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.OnTheFlyInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.SymmLinearMemoryInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.SymmMinimalistInteractionGraph method) (pyrosetta.rosetta.core.pack.interaction_graph.SymmOnTheFlyInteractionGraph method) zero_reference_pose_mapping_at_seqpos() (pyrosetta.rosetta.core.pose.Pose method) (pyrosetta.rosetta.core.pose.reference_pose.ReferencePose method) (pyrosetta.rosetta.core.pose.reference_pose.ReferencePoseSet method) zero_stored_derivs() (pyrosetta.rosetta.core.optimization.CartesianMinimizerMap method) zero_torsion_vectors() (pyrosetta.rosetta.core.optimization.MinimizerMap method) (pyrosetta.rosetta.core.optimization.symmetry.SymMinimizerMap method) zeroAngle() (pyrosetta.rosetta.protocols.pockets.EggshellGrid method) (pyrosetta.rosetta.protocols.pockets.ElectrostaticpotentialGrid method) (pyrosetta.rosetta.protocols.pockets.PocketGrid method) (pyrosetta.rosetta.protocols.pockets.TargetPocketGrid method)

ZeroOrTwo (pyrosetta.rosetta.core.chemical.gasteiger.GasteigerAtomTypeData attribute) (pyrosetta.rosetta.core.chemical.gasteiger.GasteigerAtomTypeData.PiContributionType attribute) zeros() (pyrosetta.rosetta.core.scoring.saxs.DistanceHistogram method) ZETA (pyrosetta.rosetta.core.chemical.rna.RNA_Torsion attribute) zeta() (pyrosetta.rosetta.core.pose.Pose method) (pyrosetta.rosetta.protocols.dna.DNABase method) zeta_aform() (pyrosetta.rosetta.core.chemical.rna.RNA_FittedTorsionInfo method) ZETA_ATOM (pyrosetta.rosetta.core.chemical.GreekDistance attribute) zeta_components() (pyrosetta.rosetta.core.scoring.dna.DNATorsionPotential method) zetamax (pyrosetta.rosetta.core.pose.rna.RNA_SuiteName property) zetamin (pyrosetta.rosetta.core.pose.rna.RNA_SuiteName property) zflush() (pyrosetta.rosetta.utility.io.ozstream method) zflush_finalize() (pyrosetta.rosetta.utility.io.ozstream method) ZincHeterodimerMover (class in pyrosetta.rosetta.protocols.metal_interface) ZincSiteFinder (class in pyrosetta.rosetta.protocols.metal_interface) ZIsometry (pyrosetta.rosetta.core.chemical.BondIsometry attribute) zmax() (pyrosetta.rosetta.protocols.magnesium.SampleGrid method) zmin() (pyrosetta.rosetta.protocols.magnesium.SampleGrid method) Zn (pyrosetta.rosetta.core.chemical.element.Elements attribute) ZN_CONNECT (pyrosetta.rosetta.core.chemical.VariantType attribute) znum_points() (pyrosetta.rosetta.core.energy_methods.GridInfo method) zoom() (pyrosetta.rosetta.core.optimization.StrongWolfeLineMinimization method) zorigin() (pyrosetta.rosetta.core.energy_methods.GridInfo method) Zr (pyrosetta.rosetta.core.chemical.element.Elements attribute) Zscore_to_library() (in module pyrosetta.rosetta.protocols.mpi_refinement) zscoretransform() (pyrosetta.rosetta.protocols.loop_grower.LoopPartialSolutionStore method) zstep() (pyrosetta.rosetta.core.energy_methods.GridInfo method) ztest_cutoff_1() (pyrosetta.rosetta.protocols.motifs.LigandMotifSearch method) (pyrosetta.rosetta.protocols.motifs.MotifSearch method) ztest_cutoff_2() (pyrosetta.rosetta.protocols.motifs.LigandMotifSearch method) (pyrosetta.rosetta.protocols.motifs.MotifSearch method) zvalue() (pyrosetta.rosetta.ObjexxFCL.Dimension method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpression method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCon method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionCube method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionDiv method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMax method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMin method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionMul method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionPow method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionRef method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSquare method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSub method) (pyrosetta.rosetta.ObjexxFCL.DimensionExpressionSum method) zx (pyrosetta.rosetta.numeric.xyzMatrix_double_t property) (pyrosetta.rosetta.numeric.xyzMatrix_float_t property) zx() (pyrosetta.rosetta.numeric.HomogeneousTransform_Double method) (pyrosetta.rosetta.numeric.HomogeneousTransform_double_t method) (pyrosetta.rosetta.numeric.Py_xyzTransform_double method) (pyrosetta.rosetta.numeric.xyzTransform_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_float_t method) ZXZ_CONVENTION (pyrosetta.rosetta.core.scoring.nmr.EULER_CONVENTION attribute) zy (pyrosetta.rosetta.numeric.xyzMatrix_double_t property) (pyrosetta.rosetta.numeric.xyzMatrix_float_t property) zy() (pyrosetta.rosetta.numeric.HomogeneousTransform_Double method) (pyrosetta.rosetta.numeric.HomogeneousTransform_double_t method) (pyrosetta.rosetta.numeric.Py_xyzTransform_double method) (pyrosetta.rosetta.numeric.xyzTransform_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_float_t method) ZYX_CONVENTION (pyrosetta.rosetta.core.scoring.nmr.EULER_CONVENTION attribute) ZYZ_CONVENTION (pyrosetta.rosetta.core.scoring.nmr.EULER_CONVENTION attribute) zz (pyrosetta.rosetta.numeric.xyzMatrix_double_t property) (pyrosetta.rosetta.numeric.xyzMatrix_float_t property) zz() (pyrosetta.rosetta.numeric.HomogeneousTransform_Double method) (pyrosetta.rosetta.numeric.HomogeneousTransform_double_t method) (pyrosetta.rosetta.numeric.Py_xyzTransform_double method) (pyrosetta.rosetta.numeric.xyzTransform_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_float_t method)