Index – Y

y (pyrosetta.rosetta.basic.gpu.float4 property) (pyrosetta.rosetta.basic.sampling.orientations.Quaternion property) Y (pyrosetta.rosetta.core.chemical.element.Elements attribute) y (pyrosetta.rosetta.core.io.AtomInformation property) (pyrosetta.rosetta.core.optimization.lbfgs_iteration_data property) (pyrosetta.rosetta.core.pose.rna.Atom_Bin property) (pyrosetta.rosetta.core.scoring.atomic_depth.point3d property) (pyrosetta.rosetta.core.scoring.packstat.Circle property) (pyrosetta.rosetta.core.scoring.packstat.Event property) (pyrosetta.rosetta.core.scoring.packstat.Point property) (pyrosetta.rosetta.core.scoring.packstat.SimplePDB_Atom property) (pyrosetta.rosetta.core.scoring.PQR property) (pyrosetta.rosetta.core.scoring.sc.Atom property) (pyrosetta.rosetta.numeric.interpolation.spline.Point property) (pyrosetta.rosetta.numeric.xyzVector_double_t property) (pyrosetta.rosetta.numeric.xyzVector_float_t property) (pyrosetta.rosetta.numeric.xyzVector_int_t property) (pyrosetta.rosetta.numeric.xyzVector_unsigned_long_t property) (pyrosetta.rosetta.protocols.pockets.CCluster.Cxyz property) (pyrosetta.rosetta.protocols.pockets.PCluster.Cxyz property) (pyrosetta.rosetta.protocols.simple_filters.Quat property) Y (pyrosetta.rosetta.protocols.sparta.PDB_Entry property) y (pyrosetta.rosetta.RDGeom.Point3D property) y() (in module pyrosetta.rosetta.numeric.crick_equations) (pyrosetta.rosetta.core.fragment.BBTorsionAndAnglesSRFD method) (pyrosetta.rosetta.core.fragment.BBTorsionSRFD method) (pyrosetta.rosetta.core.fragment.IndependentBBTorsionSRFD method) (pyrosetta.rosetta.core.fragment.picking_old.vall.VallResidue method) (pyrosetta.rosetta.core.kinematics.tree.Atom method) (pyrosetta.rosetta.core.kinematics.tree.Atom_ method) (pyrosetta.rosetta.core.kinematics.tree.BondedAtom method) (pyrosetta.rosetta.core.kinematics.tree.JumpAtom method) (pyrosetta.rosetta.core.scoring.packing.Ball method) (pyrosetta.rosetta.core.sequence.Cell method) (pyrosetta.rosetta.numeric.geometry.hashing.Ball method) (pyrosetta.rosetta.numeric.interpolation.spline.SimpleInterpolator method) (pyrosetta.rosetta.numeric.Py_xyzTransform_double method) (pyrosetta.rosetta.numeric.Quaternion_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_float_t method) (pyrosetta.rosetta.numeric.xyzTriple_unsigned_long_t method) (pyrosetta.rosetta.protocols.frag_picker.VallResidue method) y2hi (pyrosetta.rosetta.numeric.SplineParameters property) y2lo (pyrosetta.rosetta.numeric.SplineParameters property) y_ (pyrosetta.rosetta.numeric.geometry.hashing.Ball property) (pyrosetta.rosetta.numeric.urs_Quat property) Y_ANGLE_DOF (pyrosetta.rosetta.core.conformation.symmetry.dof_type attribute) Y_BUNDLE() (in module pyrosetta.rosetta.numeric.crick_equations) Y_DOF (pyrosetta.rosetta.core.conformation.symmetry.dof_type attribute) y_max (pyrosetta.rosetta.protocols.hotspot_hashing.CartesianSearchPattern property) (pyrosetta.rosetta.protocols.hotspot_hashing.RotationSearchPattern property) y_min (pyrosetta.rosetta.protocols.hotspot_hashing.CartesianSearchPattern property) (pyrosetta.rosetta.protocols.hotspot_hashing.RotationSearchPattern property) y_sampling (pyrosetta.rosetta.protocols.hotspot_hashing.CartesianSearchPattern property) (pyrosetta.rosetta.protocols.hotspot_hashing.RotationSearchPattern property) y_squared() (pyrosetta.rosetta.numeric.Quaternion_double_t method) y_values() (pyrosetta.rosetta.protocols.stepwise.sampler.rigid_body.RigidBodyStepWiseSamplerValueRange method) YamlEmitter (class in pyrosetta.rosetta.basic) yaxis() (pyrosetta.rosetta.numeric.HomogeneousTransform_Double method) (pyrosetta.rosetta.numeric.HomogeneousTransform_double_t method) Yb (pyrosetta.rosetta.core.chemical.element.Elements attribute) YB3_COORDINATION (pyrosetta.rosetta.core.chemical.VariantType attribute) ydim() (pyrosetta.rosetta.core.pose.xyzStripeHashPose method) (pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHash method) (pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_double_t method) (pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_float method) (pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_float_t method) (pyrosetta.rosetta.protocols.sic_dock.xyzStripeHashPoseWithMeta method) Ydim_ (pyrosetta.rosetta.core.scoring.packstat.Octree2D property) ydir (pyrosetta.rosetta.core.scoring.rna.chemical_shift.atomitem attribute)

year() (pyrosetta.rosetta.basic.citation_manager.Citation method) Yellow (pyrosetta.rosetta.utility.CSI.CSI_Enum attribute) yhh_planarity (pyrosetta.rosetta.core.scoring.ScoreType attribute) YHHPlanarityEnergy (class in pyrosetta.rosetta.core.energy_methods) YHHPlanarityEnergyCreator (class in pyrosetta.rosetta.core.energy_methods) yhi (pyrosetta.rosetta.numeric.SplineParameters property) yield_claims() (pyrosetta.rosetta.protocols.abinitio.abscript.AbscriptLoopCloserCM method) (pyrosetta.rosetta.protocols.abinitio.abscript.AbscriptMover method) (pyrosetta.rosetta.protocols.abinitio.abscript.ConstraintPreparer method) (pyrosetta.rosetta.protocols.abinitio.abscript.FragmentCM method) (pyrosetta.rosetta.protocols.abinitio.abscript.FragmentJumpCM method) (pyrosetta.rosetta.protocols.abinitio.abscript.RigidChunkCM method) (pyrosetta.rosetta.protocols.abinitio.abscript.StagePreparer method) (pyrosetta.rosetta.protocols.abinitio.abscript.StructPerturberCM method) (pyrosetta.rosetta.protocols.environment.ClientMover method) (pyrosetta.rosetta.protocols.environment.CoMTrackerCM method) (pyrosetta.rosetta.protocols.environment.ScriptCM method) (pyrosetta.rosetta.protocols.loops.loop_mover.LoopCM method) (pyrosetta.rosetta.protocols.rigid.UniformRigidBodyCM method) yield_cut_bias() (pyrosetta.rosetta.protocols.abinitio.abscript.FragmentCM method) (pyrosetta.rosetta.protocols.abinitio.abscript.FragmentJumpCM method) yield_submovers() (pyrosetta.rosetta.protocols.abinitio.abscript.AbscriptLoopCloserCM method) (pyrosetta.rosetta.protocols.abinitio.abscript.AbscriptMover method) (pyrosetta.rosetta.protocols.abinitio.abscript.AbscriptStageMover method) (pyrosetta.rosetta.protocols.abinitio.abscript.ConstraintPreparer method) (pyrosetta.rosetta.protocols.abinitio.abscript.FragmentCM method) (pyrosetta.rosetta.protocols.abinitio.abscript.FragmentJumpCM method) (pyrosetta.rosetta.protocols.abinitio.abscript.RigidChunkCM method) (pyrosetta.rosetta.protocols.abinitio.abscript.StagePreparer method) (pyrosetta.rosetta.protocols.abinitio.abscript.StructPerturberCM method) (pyrosetta.rosetta.protocols.environment.ClientMover method) (pyrosetta.rosetta.protocols.environment.CoMTrackerCM method) (pyrosetta.rosetta.protocols.environment.ScriptCM method) (pyrosetta.rosetta.protocols.loops.loop_mover.LoopCM method) (pyrosetta.rosetta.protocols.rigid.UniformRigidBodyCM method) ylab() (pyrosetta.rosetta.core.sequence.DP_Matrix method) ylo (pyrosetta.rosetta.core.scoring.etable.ExtraQuadraticRepulsion property) (pyrosetta.rosetta.numeric.SplineParameters property) ymax() (pyrosetta.rosetta.protocols.magnesium.SampleGrid method) ymin() (pyrosetta.rosetta.protocols.magnesium.SampleGrid method) ynum_points() (pyrosetta.rosetta.core.energy_methods.GridInfo method) yorigin() (pyrosetta.rosetta.core.energy_methods.GridInfo method) ys (pyrosetta.rosetta.core.optimization.lbfgs_iteration_data property) ystep() (pyrosetta.rosetta.core.energy_methods.GridInfo method) yx (pyrosetta.rosetta.numeric.xyzMatrix_double_t property) (pyrosetta.rosetta.numeric.xyzMatrix_float_t property) yx() (pyrosetta.rosetta.numeric.HomogeneousTransform_Double method) (pyrosetta.rosetta.numeric.HomogeneousTransform_double_t method) (pyrosetta.rosetta.numeric.Py_xyzTransform_double method) (pyrosetta.rosetta.numeric.xyzTransform_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_float_t method) yy (pyrosetta.rosetta.numeric.xyzMatrix_double_t property) (pyrosetta.rosetta.numeric.xyzMatrix_float_t property) yy() (pyrosetta.rosetta.numeric.HomogeneousTransform_Double method) (pyrosetta.rosetta.numeric.HomogeneousTransform_double_t method) (pyrosetta.rosetta.numeric.Py_xyzTransform_double method) (pyrosetta.rosetta.numeric.xyzTransform_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_float_t method) yz (pyrosetta.rosetta.numeric.xyzMatrix_double_t property) (pyrosetta.rosetta.numeric.xyzMatrix_float_t property) yz() (pyrosetta.rosetta.numeric.HomogeneousTransform_Double method) (pyrosetta.rosetta.numeric.HomogeneousTransform_double_t method) (pyrosetta.rosetta.numeric.Py_xyzTransform_double method) (pyrosetta.rosetta.numeric.xyzTransform_double_t method) (pyrosetta.rosetta.numeric.xyzTransform_float_t method)