Bindings for protocols::stepwise::modeler::options namespace

Classes
		rosetta.basic.resource_manager.ResourceOptions(builtins.object) StepWiseProteinModelerOptions StepWiseRNA_ModelerOptions rosetta.protocols.stepwise.options.StepWiseBasicOptions(rosetta.basic.resource_manager.ResourceOptions) StepWiseBasicModelerOptions StepWiseModelerOptions   class StepWiseBasicModelerOptions(rosetta.protocols.stepwise.options.StepWiseBasicOptions)       Method resolution order: StepWiseBasicModelerOptions rosetta.protocols.stepwise.options.StepWiseBasicOptions rosetta.basic.resource_manager.ResourceOptions builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions,  : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions choose_random(...) from builtins.PyCapsule choose_random(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool clone(...) from builtins.PyCapsule clone(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions coordinate_constraints_during_minimize(...) from builtins.PyCapsule coordinate_constraints_during_minimize(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool disallow_realign(...) from builtins.PyCapsule disallow_realign(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool dump(...) from builtins.PyCapsule dump(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions,  : rosetta.utility.tag.Tag) -> NoneType   Initialize from the recursive "tag" structure. set_choose_random(...) from builtins.PyCapsule set_choose_random(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType set_coordinate_constraints_during_minimize(...) from builtins.PyCapsule set_coordinate_constraints_during_minimize(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType set_disallow_realign(...) from builtins.PyCapsule set_disallow_realign(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType set_dump(...) from builtins.PyCapsule set_dump(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType set_skip_minimize(...) from builtins.PyCapsule set_skip_minimize(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType set_use_green_packer(...) from builtins.PyCapsule set_use_green_packer(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType set_verbose(...) from builtins.PyCapsule set_verbose(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType set_virtualize_packable_moieties_in_screening_pose(...) from builtins.PyCapsule set_virtualize_packable_moieties_in_screening_pose(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType skip_minimize(...) from builtins.PyCapsule skip_minimize(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool type(...) from builtins.PyCapsule type(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> str   The class name (its type) for a particular ResourceOptions instance.  This function allows for better error message delivery. use_green_packer(...) from builtins.PyCapsule use_green_packer(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool verbose(...) from builtins.PyCapsule verbose(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool virtualize_packable_moieties_in_screening_pose(...) from builtins.PyCapsule virtualize_packable_moieties_in_screening_pose(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool Methods inherited from rosetta.protocols.stepwise.options.StepWiseBasicOptions: VDW_rep_screen_info(...) from builtins.PyCapsule VDW_rep_screen_info(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> rosetta.utility.vector1_std_string atr_rep_screen(...) from builtins.PyCapsule atr_rep_screen(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool atr_rep_screen_for_docking(...) from builtins.PyCapsule atr_rep_screen_for_docking(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool cluster_rmsd(...) from builtins.PyCapsule cluster_rmsd(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> float hydrate_magnesiums(...) from builtins.PyCapsule hydrate_magnesiums(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool lores(...) from builtins.PyCapsule lores(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool max_tries_multiplier_for_ccd(...) from builtins.PyCapsule max_tries_multiplier_for_ccd(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> int min_tolerance(...) from builtins.PyCapsule min_tolerance(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> float min_type(...) from builtins.PyCapsule min_type(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> str minimize_waters(...) from builtins.PyCapsule minimize_waters(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool num_pose_minimize(...) from builtins.PyCapsule num_pose_minimize(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> int num_random_samples(...) from builtins.PyCapsule num_random_samples(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> int output_cluster_size(...) from builtins.PyCapsule output_cluster_size(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool output_minimized_pose_list(...) from builtins.PyCapsule output_minimized_pose_list(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool rmsd_screen(...) from builtins.PyCapsule rmsd_screen(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> float sampler_num_pose_kept(...) from builtins.PyCapsule sampler_num_pose_kept(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> int sampler_silent_file(...) from builtins.PyCapsule sampler_silent_file(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> str set_VDW_rep_screen_info(...) from builtins.PyCapsule set_VDW_rep_screen_info(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : rosetta.utility.vector1_std_string) -> NoneType set_atr_rep_screen(...) from builtins.PyCapsule set_atr_rep_screen(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_atr_rep_screen_for_docking(...) from builtins.PyCapsule set_atr_rep_screen_for_docking(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_cluster_rmsd(...) from builtins.PyCapsule set_cluster_rmsd(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : float) -> NoneType set_hydrate_magnesiums(...) from builtins.PyCapsule set_hydrate_magnesiums(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_lores(...) from builtins.PyCapsule set_lores(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_max_tries_multiplier_for_ccd(...) from builtins.PyCapsule set_max_tries_multiplier_for_ccd(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : int) -> NoneType set_min_tolerance(...) from builtins.PyCapsule set_min_tolerance(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : float) -> NoneType set_min_type(...) from builtins.PyCapsule set_min_type(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : str) -> NoneType set_minimize_waters(...) from builtins.PyCapsule set_minimize_waters(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_num_pose_minimize(...) from builtins.PyCapsule set_num_pose_minimize(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : int) -> NoneType set_num_random_samples(...) from builtins.PyCapsule set_num_random_samples(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : int) -> NoneType set_output_cluster_size(...) from builtins.PyCapsule set_output_cluster_size(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_output_minimized_pose_list(...) from builtins.PyCapsule set_output_minimized_pose_list(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_rmsd_screen(...) from builtins.PyCapsule set_rmsd_screen(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : float) -> NoneType set_sampler_num_pose_kept(...) from builtins.PyCapsule set_sampler_num_pose_kept(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : int) -> NoneType set_sampler_silent_file(...) from builtins.PyCapsule set_sampler_silent_file(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : str) -> NoneType set_silent_file(...) from builtins.PyCapsule set_silent_file(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : str) -> NoneType set_test_all_mg_hydration_frames(...) from builtins.PyCapsule set_test_all_mg_hydration_frames(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_use_packer_instead_of_rotamer_trials(...) from builtins.PyCapsule set_use_packer_instead_of_rotamer_trials(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_vary_polar_hydrogen_geometry(...) from builtins.PyCapsule set_vary_polar_hydrogen_geometry(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_vary_rna_bond_geometry(...) from builtins.PyCapsule set_vary_rna_bond_geometry(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_verbose_sampler(...) from builtins.PyCapsule set_verbose_sampler(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType silent_file(...) from builtins.PyCapsule silent_file(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> str test_all_mg_hydration_frames(...) from builtins.PyCapsule test_all_mg_hydration_frames(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool use_packer_instead_of_rotamer_trials(...) from builtins.PyCapsule use_packer_instead_of_rotamer_trials(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool vary_polar_hydrogen_geometry(...) from builtins.PyCapsule vary_polar_hydrogen_geometry(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool vary_rna_bond_geometry(...) from builtins.PyCapsule vary_rna_bond_geometry(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool verbose_sampler(...) from builtins.PyCapsule verbose_sampler(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool Methods inherited from rosetta.basic.resource_manager.ResourceOptions: __str__(...) from builtins.PyCapsule __str__(rosetta.basic.resource_manager.ResourceOptions) -> str name(...) from builtins.PyCapsule name(*args, **kwargs) Overloaded function.   1. name(rosetta.basic.resource_manager.ResourceOptions) -> str   A name given to a particular ResourceOptions instance.  This function allows for better error message delivery.   2. name(self : rosetta.basic.resource_manager.ResourceOptions, setting : str) -> NoneType   Set the name for this %ResoureOptions instance.   class StepWiseModelerOptions(StepWiseBasicModelerOptions)     //////////////////////////////////////////////////////////////////////////////////////////     Method resolution order: StepWiseModelerOptions StepWiseBasicModelerOptions rosetta.protocols.stepwise.options.StepWiseBasicOptions rosetta.basic.resource_manager.ResourceOptions builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.stepwise.modeler.options.StepWiseModelerOptions) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.stepwise.modeler.options.StepWiseModelerOptions,  : rosetta.protocols.stepwise.modeler.options.StepWiseModelerOptions) -> rosetta.protocols.stepwise.modeler.options.StepWiseModelerOptions clone(...) from builtins.PyCapsule clone(rosetta.protocols.stepwise.modeler.options.StepWiseModelerOptions) -> rosetta.protocols.stepwise.modeler.options.StepWiseModelerOptions get_sampler_options(...) from builtins.PyCapsule get_sampler_options(rosetta.protocols.stepwise.modeler.options.StepWiseModelerOptions) -> rosetta.protocols.stepwise.modeler.options.StepWiseModelerOptions initialize_from_command_line(...) from builtins.PyCapsule initialize_from_command_line(rosetta.protocols.stepwise.modeler.options.StepWiseModelerOptions) -> NoneType parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.stepwise.modeler.options.StepWiseModelerOptions,  : rosetta.utility.tag.Tag) -> NoneType   Initialize from the recursive "tag" structure. setup_options_for_VDW_bin_checker(...) from builtins.PyCapsule setup_options_for_VDW_bin_checker(self : rosetta.protocols.stepwise.modeler.options.StepWiseModelerOptions, user_input_VDW_bin_checker : rosetta.protocols.stepwise.modeler.rna.checker.RNA_VDW_BinChecker) -> NoneType type(...) from builtins.PyCapsule type(rosetta.protocols.stepwise.modeler.options.StepWiseModelerOptions) -> str   The class name (its type) for a particular ResourceOptions instance.  This function allows for better error message delivery. Methods inherited from StepWiseBasicModelerOptions: choose_random(...) from builtins.PyCapsule choose_random(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool coordinate_constraints_during_minimize(...) from builtins.PyCapsule coordinate_constraints_during_minimize(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool disallow_realign(...) from builtins.PyCapsule disallow_realign(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool dump(...) from builtins.PyCapsule dump(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool set_choose_random(...) from builtins.PyCapsule set_choose_random(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType set_coordinate_constraints_during_minimize(...) from builtins.PyCapsule set_coordinate_constraints_during_minimize(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType set_disallow_realign(...) from builtins.PyCapsule set_disallow_realign(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType set_dump(...) from builtins.PyCapsule set_dump(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType set_skip_minimize(...) from builtins.PyCapsule set_skip_minimize(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType set_use_green_packer(...) from builtins.PyCapsule set_use_green_packer(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType set_verbose(...) from builtins.PyCapsule set_verbose(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType set_virtualize_packable_moieties_in_screening_pose(...) from builtins.PyCapsule set_virtualize_packable_moieties_in_screening_pose(self : rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions, setting : bool) -> NoneType skip_minimize(...) from builtins.PyCapsule skip_minimize(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool use_green_packer(...) from builtins.PyCapsule use_green_packer(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool verbose(...) from builtins.PyCapsule verbose(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool virtualize_packable_moieties_in_screening_pose(...) from builtins.PyCapsule virtualize_packable_moieties_in_screening_pose(rosetta.protocols.stepwise.modeler.options.StepWiseBasicModelerOptions) -> bool Methods inherited from rosetta.protocols.stepwise.options.StepWiseBasicOptions: VDW_rep_screen_info(...) from builtins.PyCapsule VDW_rep_screen_info(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> rosetta.utility.vector1_std_string atr_rep_screen(...) from builtins.PyCapsule atr_rep_screen(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool atr_rep_screen_for_docking(...) from builtins.PyCapsule atr_rep_screen_for_docking(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool cluster_rmsd(...) from builtins.PyCapsule cluster_rmsd(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> float hydrate_magnesiums(...) from builtins.PyCapsule hydrate_magnesiums(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool lores(...) from builtins.PyCapsule lores(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool max_tries_multiplier_for_ccd(...) from builtins.PyCapsule max_tries_multiplier_for_ccd(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> int min_tolerance(...) from builtins.PyCapsule min_tolerance(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> float min_type(...) from builtins.PyCapsule min_type(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> str minimize_waters(...) from builtins.PyCapsule minimize_waters(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool num_pose_minimize(...) from builtins.PyCapsule num_pose_minimize(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> int num_random_samples(...) from builtins.PyCapsule num_random_samples(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> int output_cluster_size(...) from builtins.PyCapsule output_cluster_size(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool output_minimized_pose_list(...) from builtins.PyCapsule output_minimized_pose_list(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool rmsd_screen(...) from builtins.PyCapsule rmsd_screen(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> float sampler_num_pose_kept(...) from builtins.PyCapsule sampler_num_pose_kept(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> int sampler_silent_file(...) from builtins.PyCapsule sampler_silent_file(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> str set_VDW_rep_screen_info(...) from builtins.PyCapsule set_VDW_rep_screen_info(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : rosetta.utility.vector1_std_string) -> NoneType set_atr_rep_screen(...) from builtins.PyCapsule set_atr_rep_screen(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_atr_rep_screen_for_docking(...) from builtins.PyCapsule set_atr_rep_screen_for_docking(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_cluster_rmsd(...) from builtins.PyCapsule set_cluster_rmsd(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : float) -> NoneType set_hydrate_magnesiums(...) from builtins.PyCapsule set_hydrate_magnesiums(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_lores(...) from builtins.PyCapsule set_lores(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_max_tries_multiplier_for_ccd(...) from builtins.PyCapsule set_max_tries_multiplier_for_ccd(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : int) -> NoneType set_min_tolerance(...) from builtins.PyCapsule set_min_tolerance(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : float) -> NoneType set_min_type(...) from builtins.PyCapsule set_min_type(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : str) -> NoneType set_minimize_waters(...) from builtins.PyCapsule set_minimize_waters(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_num_pose_minimize(...) from builtins.PyCapsule set_num_pose_minimize(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : int) -> NoneType set_num_random_samples(...) from builtins.PyCapsule set_num_random_samples(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : int) -> NoneType set_output_cluster_size(...) from builtins.PyCapsule set_output_cluster_size(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_output_minimized_pose_list(...) from builtins.PyCapsule set_output_minimized_pose_list(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_rmsd_screen(...) from builtins.PyCapsule set_rmsd_screen(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : float) -> NoneType set_sampler_num_pose_kept(...) from builtins.PyCapsule set_sampler_num_pose_kept(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : int) -> NoneType set_sampler_silent_file(...) from builtins.PyCapsule set_sampler_silent_file(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : str) -> NoneType set_silent_file(...) from builtins.PyCapsule set_silent_file(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : str) -> NoneType set_test_all_mg_hydration_frames(...) from builtins.PyCapsule set_test_all_mg_hydration_frames(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_use_packer_instead_of_rotamer_trials(...) from builtins.PyCapsule set_use_packer_instead_of_rotamer_trials(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_vary_polar_hydrogen_geometry(...) from builtins.PyCapsule set_vary_polar_hydrogen_geometry(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_vary_rna_bond_geometry(...) from builtins.PyCapsule set_vary_rna_bond_geometry(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType set_verbose_sampler(...) from builtins.PyCapsule set_verbose_sampler(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType silent_file(...) from builtins.PyCapsule silent_file(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> str test_all_mg_hydration_frames(...) from builtins.PyCapsule test_all_mg_hydration_frames(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool use_packer_instead_of_rotamer_trials(...) from builtins.PyCapsule use_packer_instead_of_rotamer_trials(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool vary_polar_hydrogen_geometry(...) from builtins.PyCapsule vary_polar_hydrogen_geometry(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool vary_rna_bond_geometry(...) from builtins.PyCapsule vary_rna_bond_geometry(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool verbose_sampler(...) from builtins.PyCapsule verbose_sampler(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool Methods inherited from rosetta.basic.resource_manager.ResourceOptions: __str__(...) from builtins.PyCapsule __str__(rosetta.basic.resource_manager.ResourceOptions) -> str name(...) from builtins.PyCapsule name(*args, **kwargs) Overloaded function.   1. name(rosetta.basic.resource_manager.ResourceOptions) -> str   A name given to a particular ResourceOptions instance.  This function allows for better error message delivery.   2. name(self : rosetta.basic.resource_manager.ResourceOptions, setting : str) -> NoneType   Set the name for this %ResoureOptions instance.   class StepWiseProteinModelerOptions(rosetta.basic.resource_manager.ResourceOptions)       Method resolution order: StepWiseProteinModelerOptions rosetta.basic.resource_manager.ResourceOptions builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. allow_virtual_side_chains(...) from builtins.PyCapsule allow_virtual_side_chains(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions,  : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions bridge_res(...) from builtins.PyCapsule bridge_res(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> rosetta.utility.vector1_unsigned_long cart_min(...) from builtins.PyCapsule cart_min(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool ccd_close(...) from builtins.PyCapsule ccd_close(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool centroid_output(...) from builtins.PyCapsule centroid_output(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool centroid_score_diff_cut(...) from builtins.PyCapsule centroid_score_diff_cut(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> float centroid_screen(...) from builtins.PyCapsule centroid_screen(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool centroid_weights(...) from builtins.PyCapsule centroid_weights(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> str clone(...) from builtins.PyCapsule clone(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions cluster_by_all_atom_rmsd(...) from builtins.PyCapsule cluster_by_all_atom_rmsd(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool disable_sampling_of_loop_takeoff(...) from builtins.PyCapsule disable_sampling_of_loop_takeoff(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool expand_loop_takeoff(...) from builtins.PyCapsule expand_loop_takeoff(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool filter_native_big_bins(...) from builtins.PyCapsule filter_native_big_bins(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool frag_files(...) from builtins.PyCapsule frag_files(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> rosetta.utility.vector1_std_string ghost_loops(...) from builtins.PyCapsule ghost_loops(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool global_optimize(...) from builtins.PyCapsule global_optimize(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool initialize_from_command_line(...) from builtins.PyCapsule initialize_from_command_line(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> NoneType mapfile_activated(...) from builtins.PyCapsule mapfile_activated(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool move_jumps_between_chains(...) from builtins.PyCapsule move_jumps_between_chains(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool n_sample(...) from builtins.PyCapsule n_sample(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> int nstruct_centroid(...) from builtins.PyCapsule nstruct_centroid(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> int pack_weights(...) from builtins.PyCapsule pack_weights(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> str parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions,  : rosetta.utility.tag.Tag) -> NoneType   Initialize from the recursive "tag" structure. prepack(...) from builtins.PyCapsule prepack(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool sample_beta(...) from builtins.PyCapsule sample_beta(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool set_allow_virtual_side_chains(...) from builtins.PyCapsule set_allow_virtual_side_chains(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType set_bridge_res(...) from builtins.PyCapsule set_bridge_res(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_cart_min(...) from builtins.PyCapsule set_cart_min(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType set_ccd_close(...) from builtins.PyCapsule set_ccd_close(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType set_centroid_output(...) from builtins.PyCapsule set_centroid_output(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType set_centroid_score_diff_cut(...) from builtins.PyCapsule set_centroid_score_diff_cut(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : float) -> NoneType set_centroid_screen(...) from builtins.PyCapsule set_centroid_screen(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType set_centroid_weights(...) from builtins.PyCapsule set_centroid_weights(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : str) -> NoneType set_cluster_by_all_atom_rmsd(...) from builtins.PyCapsule set_cluster_by_all_atom_rmsd(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType set_disable_sampling_of_loop_takeoff(...) from builtins.PyCapsule set_disable_sampling_of_loop_takeoff(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType set_expand_loop_takeoff(...) from builtins.PyCapsule set_expand_loop_takeoff(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType set_filter_native_big_bins(...) from builtins.PyCapsule set_filter_native_big_bins(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType set_frag_files(...) from builtins.PyCapsule set_frag_files(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : rosetta.utility.vector1_std_string) -> NoneType set_ghost_loops(...) from builtins.PyCapsule set_ghost_loops(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType set_global_optimize(...) from builtins.PyCapsule set_global_optimize(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType set_mapfile_activated(...) from builtins.PyCapsule set_mapfile_activated(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType set_move_jumps_between_chains(...) from builtins.PyCapsule set_move_jumps_between_chains(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType set_n_sample(...) from builtins.PyCapsule set_n_sample(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : int) -> NoneType set_nstruct_centroid(...) from builtins.PyCapsule set_nstruct_centroid(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : int) -> NoneType set_pack_weights(...) from builtins.PyCapsule set_pack_weights(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : str) -> NoneType set_prepack(...) from builtins.PyCapsule set_prepack(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType set_sample_beta(...) from builtins.PyCapsule set_sample_beta(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType set_skip_coord_constraints(...) from builtins.PyCapsule set_skip_coord_constraints(self : rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions, setting : bool) -> NoneType skip_coord_constraints(...) from builtins.PyCapsule skip_coord_constraints(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> bool type(...) from builtins.PyCapsule type(rosetta.protocols.stepwise.modeler.options.StepWiseProteinModelerOptions) -> str   The class name (its type) for a particular ResourceOptions instance.  This function allows for better error message delivery. Methods inherited from rosetta.basic.resource_manager.ResourceOptions: __str__(...) from builtins.PyCapsule __str__(rosetta.basic.resource_manager.ResourceOptions) -> str name(...) from builtins.PyCapsule name(*args, **kwargs) Overloaded function.   1. name(rosetta.basic.resource_manager.ResourceOptions) -> str   A name given to a particular ResourceOptions instance.  This function allows for better error message delivery.   2. name(self : rosetta.basic.resource_manager.ResourceOptions, setting : str) -> NoneType   Set the name for this %ResoureOptions instance.   class StepWiseRNA_ModelerOptions(rosetta.basic.resource_manager.ResourceOptions)       Method resolution order: StepWiseRNA_ModelerOptions rosetta.basic.resource_manager.ResourceOptions builtins.object Methods defined here: PBP_clustering_at_chain_closure(...) from builtins.PyCapsule PBP_clustering_at_chain_closure(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool VDW_rep_alignment_RMSD_CUTOFF(...) from builtins.PyCapsule VDW_rep_alignment_RMSD_CUTOFF(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> float VDW_rep_delete_matching_res(...) from builtins.PyCapsule VDW_rep_delete_matching_res(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> rosetta.utility.vector1_std_string VDW_rep_screen_physical_pose_clash_dist_cutoff(...) from builtins.PyCapsule VDW_rep_screen_physical_pose_clash_dist_cutoff(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. allow_base_pair_only_centroid_screen(...) from builtins.PyCapsule allow_base_pair_only_centroid_screen(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool allow_bulge_at_chainbreak(...) from builtins.PyCapsule allow_bulge_at_chainbreak(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool allow_rebuild_bulge_mode(...) from builtins.PyCapsule allow_rebuild_bulge_mode(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool allow_syn_pyrimidine(...) from builtins.PyCapsule allow_syn_pyrimidine(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool allow_virtual_o2prime_hydrogens(...) from builtins.PyCapsule allow_virtual_o2prime_hydrogens(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions,  : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions clone(...) from builtins.PyCapsule clone(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions combine_long_loop_mode(...) from builtins.PyCapsule combine_long_loop_mode(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool distinguish_pucker(...) from builtins.PyCapsule distinguish_pucker(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool do_not_sample_multiple_virtual_sugar(...) from builtins.PyCapsule do_not_sample_multiple_virtual_sugar(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool extra_chi(...) from builtins.PyCapsule extra_chi(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool finer_sampling_at_chain_closure(...) from builtins.PyCapsule finer_sampling_at_chain_closure(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool force_centroid_interaction(...) from builtins.PyCapsule force_centroid_interaction(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool force_phosphate_instantiation(...) from builtins.PyCapsule force_phosphate_instantiation(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool initialize_from_command_line(...) from builtins.PyCapsule initialize_from_command_line(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> NoneType integration_test_mode(...) from builtins.PyCapsule integration_test_mode(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool kic_modeler_if_relevant(...) from builtins.PyCapsule kic_modeler_if_relevant(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool minimize_and_score_native_pose(...) from builtins.PyCapsule minimize_and_score_native_pose(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool minimize_and_score_sugar(...) from builtins.PyCapsule minimize_and_score_sugar(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool minimizer_rename_tag(...) from builtins.PyCapsule minimizer_rename_tag(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool native_edensity_score_cutoff(...) from builtins.PyCapsule native_edensity_score_cutoff(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> float o2prime_legacy_mode(...) from builtins.PyCapsule o2prime_legacy_mode(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool parin_favorite_output(...) from builtins.PyCapsule parin_favorite_output(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool parse_my_tag(...) from builtins.PyCapsule parse_my_tag(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions,  : rosetta.utility.tag.Tag) -> NoneType   Initialize from the recursive "tag" structure. reinitialize_CCD_torsions(...) from builtins.PyCapsule reinitialize_CCD_torsions(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool rm_virt_phosphate(...) from builtins.PyCapsule rm_virt_phosphate(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool rna_legacy_output_mode(...) from builtins.PyCapsule rna_legacy_output_mode(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool sample_ONLY_multiple_virtual_sugar(...) from builtins.PyCapsule sample_ONLY_multiple_virtual_sugar(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool sampler_assert_no_virt_sugar_sampling(...) from builtins.PyCapsule sampler_assert_no_virt_sugar_sampling(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool sampler_extra_beta_rotamer(...) from builtins.PyCapsule sampler_extra_beta_rotamer(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool sampler_extra_epsilon_rotamer(...) from builtins.PyCapsule sampler_extra_epsilon_rotamer(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool sampler_include_torsion_value_in_tag(...) from builtins.PyCapsule sampler_include_torsion_value_in_tag(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool sampler_max_centroid_distance(...) from builtins.PyCapsule sampler_max_centroid_distance(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> float sampler_perform_phosphate_pack(...) from builtins.PyCapsule sampler_perform_phosphate_pack(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool sampler_try_sugar_instantiation(...) from builtins.PyCapsule sampler_try_sugar_instantiation(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool set_PBP_clustering_at_chain_closure(...) from builtins.PyCapsule set_PBP_clustering_at_chain_closure(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_VDW_rep_alignment_RMSD_CUTOFF(...) from builtins.PyCapsule set_VDW_rep_alignment_RMSD_CUTOFF(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : float) -> NoneType set_VDW_rep_delete_matching_res(...) from builtins.PyCapsule set_VDW_rep_delete_matching_res(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : rosetta.utility.vector1_std_string) -> NoneType set_VDW_rep_screen_physical_pose_clash_dist_cutoff(...) from builtins.PyCapsule set_VDW_rep_screen_physical_pose_clash_dist_cutoff(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_allow_base_pair_only_centroid_screen(...) from builtins.PyCapsule set_allow_base_pair_only_centroid_screen(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_allow_bulge_at_chainbreak(...) from builtins.PyCapsule set_allow_bulge_at_chainbreak(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_allow_rebuild_bulge_mode(...) from builtins.PyCapsule set_allow_rebuild_bulge_mode(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_allow_syn_pyrimidine(...) from builtins.PyCapsule set_allow_syn_pyrimidine(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_allow_virtual_o2prime_hydrogens(...) from builtins.PyCapsule set_allow_virtual_o2prime_hydrogens(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_combine_long_loop_mode(...) from builtins.PyCapsule set_combine_long_loop_mode(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_distinguish_pucker(...) from builtins.PyCapsule set_distinguish_pucker(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_do_not_sample_multiple_virtual_sugar(...) from builtins.PyCapsule set_do_not_sample_multiple_virtual_sugar(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_extra_chi(...) from builtins.PyCapsule set_extra_chi(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_finer_sampling_at_chain_closure(...) from builtins.PyCapsule set_finer_sampling_at_chain_closure(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_force_centroid_interaction(...) from builtins.PyCapsule set_force_centroid_interaction(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_force_phosphate_instantiation(...) from builtins.PyCapsule set_force_phosphate_instantiation(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_integration_test_mode(...) from builtins.PyCapsule set_integration_test_mode(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_kic_modeler_if_relevant(...) from builtins.PyCapsule set_kic_modeler_if_relevant(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_minimize_and_score_native_pose(...) from builtins.PyCapsule set_minimize_and_score_native_pose(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_minimize_and_score_sugar(...) from builtins.PyCapsule set_minimize_and_score_sugar(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_minimizer_rename_tag(...) from builtins.PyCapsule set_minimizer_rename_tag(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_native_edensity_score_cutoff(...) from builtins.PyCapsule set_native_edensity_score_cutoff(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : float) -> NoneType set_o2prime_legacy_mode(...) from builtins.PyCapsule set_o2prime_legacy_mode(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_parin_favorite_output(...) from builtins.PyCapsule set_parin_favorite_output(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_reinitialize_CCD_torsions(...) from builtins.PyCapsule set_reinitialize_CCD_torsions(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_rm_virt_phosphate(...) from builtins.PyCapsule set_rm_virt_phosphate(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_rna_legacy_output_mode(...) from builtins.PyCapsule set_rna_legacy_output_mode(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_sample_ONLY_multiple_virtual_sugar(...) from builtins.PyCapsule set_sample_ONLY_multiple_virtual_sugar(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_sampler_assert_no_virt_sugar_sampling(...) from builtins.PyCapsule set_sampler_assert_no_virt_sugar_sampling(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_sampler_extra_beta_rotamer(...) from builtins.PyCapsule set_sampler_extra_beta_rotamer(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_sampler_extra_epsilon_rotamer(...) from builtins.PyCapsule set_sampler_extra_epsilon_rotamer(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_sampler_include_torsion_value_in_tag(...) from builtins.PyCapsule set_sampler_include_torsion_value_in_tag(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_sampler_max_centroid_distance(...) from builtins.PyCapsule set_sampler_max_centroid_distance(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : float) -> NoneType set_sampler_perform_phosphate_pack(...) from builtins.PyCapsule set_sampler_perform_phosphate_pack(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_sampler_try_sugar_instantiation(...) from builtins.PyCapsule set_sampler_try_sugar_instantiation(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_tether_jump(...) from builtins.PyCapsule set_tether_jump(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_turn_off_rna_chem_map_during_optimize(...) from builtins.PyCapsule set_turn_off_rna_chem_map_during_optimize(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_use_phenix_geo(...) from builtins.PyCapsule set_use_phenix_geo(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_virtual_sugar_do_minimize(...) from builtins.PyCapsule set_virtual_sugar_do_minimize(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_virtual_sugar_do_screens(...) from builtins.PyCapsule set_virtual_sugar_do_screens(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_virtual_sugar_keep_base_fixed(...) from builtins.PyCapsule set_virtual_sugar_keep_base_fixed(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType set_virtual_sugar_legacy_mode(...) from builtins.PyCapsule set_virtual_sugar_legacy_mode(self : rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions, setting : bool) -> NoneType tether_jump(...) from builtins.PyCapsule tether_jump(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool turn_off_rna_chem_map_during_optimize(...) from builtins.PyCapsule turn_off_rna_chem_map_during_optimize(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool type(...) from builtins.PyCapsule type(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> str   The class name (its type) for a particular ResourceOptions instance.  This function allows for better error message delivery. use_phenix_geo(...) from builtins.PyCapsule use_phenix_geo(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool virtual_sugar_do_minimize(...) from builtins.PyCapsule virtual_sugar_do_minimize(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool virtual_sugar_do_screens(...) from builtins.PyCapsule virtual_sugar_do_screens(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool virtual_sugar_keep_base_fixed(...) from builtins.PyCapsule virtual_sugar_keep_base_fixed(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool virtual_sugar_legacy_mode(...) from builtins.PyCapsule virtual_sugar_legacy_mode(rosetta.protocols.stepwise.modeler.options.StepWiseRNA_ModelerOptions) -> bool Methods inherited from rosetta.basic.resource_manager.ResourceOptions: __str__(...) from builtins.PyCapsule __str__(rosetta.basic.resource_manager.ResourceOptions) -> str name(...) from builtins.PyCapsule name(*args, **kwargs) Overloaded function.   1. name(rosetta.basic.resource_manager.ResourceOptions) -> str   A name given to a particular ResourceOptions instance.  This function allows for better error message delivery.   2. name(self : rosetta.basic.resource_manager.ResourceOptions, setting : str) -> NoneType   Set the name for this %ResoureOptions instance.