rosetta.protocols.stepwise.options
index
(built-in)

Bindings for protocols::stepwise::options namespace

 
Classes
       
rosetta.basic.resource_manager.ResourceOptions(builtins.object)
StepWiseBasicOptions

 
class StepWiseBasicOptions(rosetta.basic.resource_manager.ResourceOptions)
    
Method resolution order:
StepWiseBasicOptions
rosetta.basic.resource_manager.ResourceOptions
builtins.object

Methods defined here:
VDW_rep_screen_info(...) from builtins.PyCapsule
VDW_rep_screen_info(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> rosetta.utility.vector1_std_string
__init__(...) from builtins.PyCapsule
__init__(*args, **kwargs)
Overloaded function.
 
1. __init__(handle) -> NoneType
 
2. __init__(handle, rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions,  : rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> rosetta.protocols.stepwise.options.StepWiseBasicOptions
atr_rep_screen(...) from builtins.PyCapsule
atr_rep_screen(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool
atr_rep_screen_for_docking(...) from builtins.PyCapsule
atr_rep_screen_for_docking(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool
clone(...) from builtins.PyCapsule
clone(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> rosetta.protocols.stepwise.options.StepWiseBasicOptions
cluster_rmsd(...) from builtins.PyCapsule
cluster_rmsd(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> float
hydrate_magnesiums(...) from builtins.PyCapsule
hydrate_magnesiums(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool
lores(...) from builtins.PyCapsule
lores(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool
max_tries_multiplier_for_ccd(...) from builtins.PyCapsule
max_tries_multiplier_for_ccd(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> int
min_tolerance(...) from builtins.PyCapsule
min_tolerance(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> float
min_type(...) from builtins.PyCapsule
min_type(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> str
minimize_waters(...) from builtins.PyCapsule
minimize_waters(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool
num_pose_minimize(...) from builtins.PyCapsule
num_pose_minimize(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> int
num_random_samples(...) from builtins.PyCapsule
num_random_samples(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> int
output_cluster_size(...) from builtins.PyCapsule
output_cluster_size(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool
output_minimized_pose_list(...) from builtins.PyCapsule
output_minimized_pose_list(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool
parse_my_tag(...) from builtins.PyCapsule
parse_my_tag(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions,  : rosetta.utility.tag.Tag) -> NoneType
 
Initialize from the recursive "tag" structure.
rmsd_screen(...) from builtins.PyCapsule
rmsd_screen(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> float
sampler_num_pose_kept(...) from builtins.PyCapsule
sampler_num_pose_kept(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> int
sampler_silent_file(...) from builtins.PyCapsule
sampler_silent_file(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> str
set_VDW_rep_screen_info(...) from builtins.PyCapsule
set_VDW_rep_screen_info(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : rosetta.utility.vector1_std_string) -> NoneType
set_atr_rep_screen(...) from builtins.PyCapsule
set_atr_rep_screen(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType
set_atr_rep_screen_for_docking(...) from builtins.PyCapsule
set_atr_rep_screen_for_docking(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType
set_cluster_rmsd(...) from builtins.PyCapsule
set_cluster_rmsd(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : float) -> NoneType
set_hydrate_magnesiums(...) from builtins.PyCapsule
set_hydrate_magnesiums(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType
set_lores(...) from builtins.PyCapsule
set_lores(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType
set_max_tries_multiplier_for_ccd(...) from builtins.PyCapsule
set_max_tries_multiplier_for_ccd(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : int) -> NoneType
set_min_tolerance(...) from builtins.PyCapsule
set_min_tolerance(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : float) -> NoneType
set_min_type(...) from builtins.PyCapsule
set_min_type(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : str) -> NoneType
set_minimize_waters(...) from builtins.PyCapsule
set_minimize_waters(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType
set_num_pose_minimize(...) from builtins.PyCapsule
set_num_pose_minimize(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : int) -> NoneType
set_num_random_samples(...) from builtins.PyCapsule
set_num_random_samples(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : int) -> NoneType
set_output_cluster_size(...) from builtins.PyCapsule
set_output_cluster_size(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType
set_output_minimized_pose_list(...) from builtins.PyCapsule
set_output_minimized_pose_list(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType
set_rmsd_screen(...) from builtins.PyCapsule
set_rmsd_screen(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : float) -> NoneType
set_sampler_num_pose_kept(...) from builtins.PyCapsule
set_sampler_num_pose_kept(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : int) -> NoneType
set_sampler_silent_file(...) from builtins.PyCapsule
set_sampler_silent_file(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : str) -> NoneType
set_silent_file(...) from builtins.PyCapsule
set_silent_file(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : str) -> NoneType
set_test_all_mg_hydration_frames(...) from builtins.PyCapsule
set_test_all_mg_hydration_frames(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType
set_use_packer_instead_of_rotamer_trials(...) from builtins.PyCapsule
set_use_packer_instead_of_rotamer_trials(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType
set_vary_polar_hydrogen_geometry(...) from builtins.PyCapsule
set_vary_polar_hydrogen_geometry(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType
set_vary_rna_bond_geometry(...) from builtins.PyCapsule
set_vary_rna_bond_geometry(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType
set_verbose_sampler(...) from builtins.PyCapsule
set_verbose_sampler(self : rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting : bool) -> NoneType
silent_file(...) from builtins.PyCapsule
silent_file(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> str
test_all_mg_hydration_frames(...) from builtins.PyCapsule
test_all_mg_hydration_frames(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool
type(...) from builtins.PyCapsule
type(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> str
 
The class name (its type) for a particular ResourceOptions instance.
 This function allows for better error message delivery.
use_packer_instead_of_rotamer_trials(...) from builtins.PyCapsule
use_packer_instead_of_rotamer_trials(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool
vary_polar_hydrogen_geometry(...) from builtins.PyCapsule
vary_polar_hydrogen_geometry(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool
vary_rna_bond_geometry(...) from builtins.PyCapsule
vary_rna_bond_geometry(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool
verbose_sampler(...) from builtins.PyCapsule
verbose_sampler(rosetta.protocols.stepwise.options.StepWiseBasicOptions) -> bool

Methods inherited from rosetta.basic.resource_manager.ResourceOptions:
__str__(...) from builtins.PyCapsule
__str__(rosetta.basic.resource_manager.ResourceOptions) -> str
name(...) from builtins.PyCapsule
name(*args, **kwargs)
Overloaded function.
 
1. name(rosetta.basic.resource_manager.ResourceOptions) -> str
 
A name given to a particular ResourceOptions instance.
 This function allows for better error message delivery.
 
2. name(self : rosetta.basic.resource_manager.ResourceOptions, setting : str) -> NoneType
 
Set the name for this %ResoureOptions instance.