| | |
- builtins.object
-
- VallResidue
- rosetta.core.fragment.picking_old.concepts.Book_core_fragment_picking_old_vall_VallResidues_t(builtins.object)
-
- VallSection
- rosetta.core.fragment.picking_old.concepts.Librarian_core_fragment_picking_old_vall_scores_VallFragmentScore_core_fragment_picking_old_vall_eval_VallFragmentEval_core_fragment_picking_old_vall_gen_VallFragmentGen_core_fragment_picking_old_vall_VallLibrary_t(builtins.object)
-
- VallLibrarian
- rosetta.core.fragment.picking_old.concepts.Library_core_fragment_picking_old_vall_VallSections_t(builtins.object)
-
- VallLibrary
- rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue(builtins.object)
-
- VallResidues
- rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection(builtins.object)
-
- VallSections
class VallLibrarian(rosetta.core.fragment.picking_old.concepts.Librarian_core_fragment_picking_old_vall_scores_VallFragmentScore_core_fragment_picking_old_vall_eval_VallFragmentEval_core_fragment_picking_old_vall_gen_VallFragmentGen_core_fragment_picking_old_vall_VallLibrary_t) |
| |
Librarian that picks fragments from the Vall
|
| |
- Method resolution order:
- VallLibrarian
- rosetta.core.fragment.picking_old.concepts.Librarian_core_fragment_picking_old_vall_scores_VallFragmentScore_core_fragment_picking_old_vall_eval_VallFragmentEval_core_fragment_picking_old_vall_gen_VallFragmentGen_core_fragment_picking_old_vall_VallLibrary_t
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(rosetta.core.fragment.picking_old.vall.VallLibrarian) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_fragment_eval(...) from builtins.PyCapsule
- add_fragment_eval(self : rosetta.core.fragment.picking_old.vall.VallLibrarian, eval : rosetta.core.fragment.picking_old.vall.eval.VallFragmentEval) -> NoneType
add a fragment evaluator (aka extent evaluator)
- add_fragment_gen(...) from builtins.PyCapsule
- add_fragment_gen(self : rosetta.core.fragment.picking_old.vall.VallLibrarian, gen : rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen) -> NoneType
add a fragment generator (aka extent generator)
- catalog(...) from builtins.PyCapsule
- catalog(self : rosetta.core.fragment.picking_old.vall.VallLibrarian, library : rosetta.core.fragment.picking_old.vall.VallLibrary) -> bool
create sorted list corresponding to fragments in Library
uses Score's '<' for evaluation
true if creation successful, false otherwise (e.g. no VallFragmentEval or VallFragmentGen found)
- clear_fragment_eval(...) from builtins.PyCapsule
- clear_fragment_eval(rosetta.core.fragment.picking_old.vall.VallLibrarian) -> NoneType
clear list of evaluators
- clear_fragment_gen(...) from builtins.PyCapsule
- clear_fragment_gen(rosetta.core.fragment.picking_old.vall.VallLibrarian) -> NoneType
clear list of generators
- n_fragment_eval(...) from builtins.PyCapsule
- n_fragment_eval(rosetta.core.fragment.picking_old.vall.VallLibrarian) -> int
the number of currently defined fragment evaluators
- n_fragment_gen(...) from builtins.PyCapsule
- n_fragment_gen(rosetta.core.fragment.picking_old.vall.VallLibrarian) -> int
the number of currently defined fragment generators
- n_scores(...) from builtins.PyCapsule
- n_scores(rosetta.core.fragment.picking_old.vall.VallLibrarian) -> int
number of scores currently filed
- preallocate(...) from builtins.PyCapsule
- preallocate(*args, **kwargs)
Overloaded function.
1. preallocate(rosetta.core.fragment.picking_old.vall.VallLibrarian) -> bool
preallocate scores container prior to catalog() to attempt
speedup?, default true
2. preallocate(self : rosetta.core.fragment.picking_old.vall.VallLibrarian, flag : bool) -> NoneType
set flag to preallocate scores container prior to catalog() to
attempt speedup
- scores(...) from builtins.PyCapsule
- scores(*args, **kwargs)
Overloaded function.
1. scores(rosetta.core.fragment.picking_old.vall.VallLibrarian) -> rosetta.utility.vector1_core_fragment_picking_old_vall_scores_VallFragmentScore
return scores container
2. scores(rosetta.core.fragment.picking_old.vall.VallLibrarian) -> rosetta.utility.vector1_core_fragment_picking_old_vall_scores_VallFragmentScore
return scores container
Methods inherited from rosetta.core.fragment.picking_old.concepts.Librarian_core_fragment_picking_old_vall_scores_VallFragmentScore_core_fragment_picking_old_vall_eval_VallFragmentEval_core_fragment_picking_old_vall_gen_VallFragmentGen_core_fragment_picking_old_vall_VallLibrary_t:
- add_extent_eval(...) from builtins.PyCapsule
- add_extent_eval(self : rosetta.core.fragment.picking_old.concepts.Librarian_core_fragment_picking_old_vall_scores_VallFragmentScore_core_fragment_picking_old_vall_eval_VallFragmentEval_core_fragment_picking_old_vall_gen_VallFragmentGen_core_fragment_picking_old_vall_VallLibrary_t, val : core::fragment::picking_old::vall::eval::VallFragmentEval) -> NoneType
- add_extent_gen(...) from builtins.PyCapsule
- add_extent_gen(self : rosetta.core.fragment.picking_old.concepts.Librarian_core_fragment_picking_old_vall_scores_VallFragmentScore_core_fragment_picking_old_vall_eval_VallFragmentEval_core_fragment_picking_old_vall_gen_VallFragmentGen_core_fragment_picking_old_vall_VallLibrary_t, gen : core::fragment::picking_old::vall::gen::VallFragmentGen) -> NoneType
- clear_extent_eval(...) from builtins.PyCapsule
- clear_extent_eval(rosetta.core.fragment.picking_old.concepts.Librarian_core_fragment_picking_old_vall_scores_VallFragmentScore_core_fragment_picking_old_vall_eval_VallFragmentEval_core_fragment_picking_old_vall_gen_VallFragmentGen_core_fragment_picking_old_vall_VallLibrary_t) -> NoneType
- clear_extent_gen(...) from builtins.PyCapsule
- clear_extent_gen(rosetta.core.fragment.picking_old.concepts.Librarian_core_fragment_picking_old_vall_scores_VallFragmentScore_core_fragment_picking_old_vall_eval_VallFragmentEval_core_fragment_picking_old_vall_gen_VallFragmentGen_core_fragment_picking_old_vall_VallLibrary_t) -> NoneType
|
class VallLibrary(rosetta.core.fragment.picking_old.concepts.Library_core_fragment_picking_old_vall_VallSections_t) |
| |
Vall fragment library
|
| |
- Method resolution order:
- VallLibrary
- rosetta.core.fragment.picking_old.concepts.Library_core_fragment_picking_old_vall_VallSections_t
- builtins.object
Methods defined here:
- __getitem__(...) from builtins.PyCapsule
- __getitem__(self : rosetta.core.fragment.picking_old.vall.VallLibrary, idx : int) -> rosetta.core.fragment.picking_old.vall.VallSection
access a specific VallSection within this section, 1-based indexing
- __init__(...) from builtins.PyCapsule
- __init__(rosetta.core.fragment.picking_old.vall.VallLibrary) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_section(...) from builtins.PyCapsule
- add_section(self : rosetta.core.fragment.picking_old.vall.VallLibrary, section : rosetta.core.fragment.picking_old.vall.VallSection) -> NoneType
brief add a section to the end of this library
- last_section(...) from builtins.PyCapsule
- last_section(*args, **kwargs)
Overloaded function.
1. last_section(rosetta.core.fragment.picking_old.vall.VallLibrary) -> rosetta.core.fragment.picking_old.vall.VallSection
access the last section in thie library
2. last_section(rosetta.core.fragment.picking_old.vall.VallLibrary) -> rosetta.core.fragment.picking_old.vall.VallSection
access the last section in thie library
- n_residues(...) from builtins.PyCapsule
- n_residues(rosetta.core.fragment.picking_old.vall.VallLibrary) -> int
total number of residues in the library
- reindex_sections(...) from builtins.PyCapsule
- reindex_sections(rosetta.core.fragment.picking_old.vall.VallLibrary) -> NoneType
re-index VallSections within this library so they number 1 .. n
- reserve(...) from builtins.PyCapsule
- reserve(self : rosetta.core.fragment.picking_old.vall.VallLibrary, n : int) -> NoneType
ensure storage currently allocated for VallSections is at least the
given size
- tighten_memory(...) from builtins.PyCapsule
- tighten_memory(*args, **kwargs)
Overloaded function.
1. tighten_memory(rosetta.core.fragment.picking_old.vall.VallLibrary) -> NoneType
tighten memory usage
if true, only tightens memory per-section and skips
the operation for the whole library
Shrinks the capacity of the library by calling
VallSection::tighten_memory() for each section. If 'sections_only' is
false, will additionally perform a swap of the library, effectively
requiring a similar amount of memory as the current library object.
The Vall libraries can be very large, so set 'sections_only'
false only if you won't be running on a constrained memory platform.
2. tighten_memory(self : rosetta.core.fragment.picking_old.vall.VallLibrary, sections_only : bool) -> NoneType
tighten memory usage
if true, only tightens memory per-section and skips
the operation for the whole library
Shrinks the capacity of the library by calling
VallSection::tighten_memory() for each section. If 'sections_only' is
false, will additionally perform a swap of the library, effectively
requiring a similar amount of memory as the current library object.
The Vall libraries can be very large, so set 'sections_only'
false only if you won't be running on a constrained memory platform.
Methods inherited from rosetta.core.fragment.picking_old.concepts.Library_core_fragment_picking_old_vall_VallSections_t:
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.fragment.picking_old.concepts.Library_core_fragment_picking_old_vall_VallSections_t, : rosetta.core.fragment.picking_old.concepts.Library_core_fragment_picking_old_vall_VallSections_t) -> rosetta.core.fragment.picking_old.concepts.Library_core_fragment_picking_old_vall_VallSections_t
- begin(...) from builtins.PyCapsule
- begin(*args, **kwargs)
Overloaded function.
1. begin(rosetta.core.fragment.picking_old.concepts.Library_core_fragment_picking_old_vall_VallSections_t) -> __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallSection const*, std::vector<core::fragment::picking_old::vall::VallSection, std::allocator<core::fragment::picking_old::vall::VallSection> > >
2. begin(rosetta.core.fragment.picking_old.concepts.Library_core_fragment_picking_old_vall_VallSections_t) -> __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallSection*, std::vector<core::fragment::picking_old::vall::VallSection, std::allocator<core::fragment::picking_old::vall::VallSection> > >
- clear(...) from builtins.PyCapsule
- clear(rosetta.core.fragment.picking_old.concepts.Library_core_fragment_picking_old_vall_VallSections_t) -> NoneType
- end(...) from builtins.PyCapsule
- end(*args, **kwargs)
Overloaded function.
1. end(rosetta.core.fragment.picking_old.concepts.Library_core_fragment_picking_old_vall_VallSections_t) -> __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallSection const*, std::vector<core::fragment::picking_old::vall::VallSection, std::allocator<core::fragment::picking_old::vall::VallSection> > >
2. end(rosetta.core.fragment.picking_old.concepts.Library_core_fragment_picking_old_vall_VallSections_t) -> __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallSection*, std::vector<core::fragment::picking_old::vall::VallSection, std::allocator<core::fragment::picking_old::vall::VallSection> > >
- size(...) from builtins.PyCapsule
- size(rosetta.core.fragment.picking_old.concepts.Library_core_fragment_picking_old_vall_VallSections_t) -> int
|
class VallResidue(builtins.object) |
| |
class for managing a line of the Vall fragment library
|
| |
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.core.fragment.picking_old.vall.VallResidue) -> NoneType
2. __init__(self : rosetta.core.fragment.picking_old.vall.VallResidue, line : str) -> NoneType
3. __init__(self : rosetta.core.fragment.picking_old.vall.VallResidue, rval : rosetta.core.fragment.picking_old.vall.VallResidue) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- aa(...) from builtins.PyCapsule
- aa(*args, **kwargs)
Overloaded function.
1. aa(rosetta.core.fragment.picking_old.vall.VallResidue) -> str
one letter amino acid code
2. aa(self : rosetta.core.fragment.picking_old.vall.VallResidue, c : str) -> NoneType
one letter amino acid code
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.fragment.picking_old.vall.VallResidue, rval : rosetta.core.fragment.picking_old.vall.VallResidue) -> rosetta.core.fragment.picking_old.vall.VallResidue
copy assignment
- bbtorsion_srfd(...) from builtins.PyCapsule
- bbtorsion_srfd(*args, **kwargs)
Overloaded function.
1. bbtorsion_srfd(rosetta.core.fragment.picking_old.vall.VallResidue) -> rosetta.core.fragment.BBTorsionSRFD
build a BBTorsionSRFD of the given type from this page
BBTorsionSRFD::create() will be called from this object.
A BBTorsionSRFD of the given type initialized with the backbone
torsion information from this page.
2. bbtorsion_srfd(self : rosetta.core.fragment.picking_old.vall.VallResidue, srfd_type : rosetta.core.fragment.BBTorsionSRFD) -> rosetta.core.fragment.BBTorsionSRFD
build a BBTorsionSRFD of the given type from this page
BBTorsionSRFD::create() will be called from this object.
A BBTorsionSRFD of the given type initialized with the backbone
torsion information from this page.
- fill_from_string(...) from builtins.PyCapsule
- fill_from_string(self : rosetta.core.fragment.picking_old.vall.VallResidue, line : str) -> NoneType
fill internal data from string
- has_profile(...) from builtins.PyCapsule
- has_profile(rosetta.core.fragment.picking_old.vall.VallResidue) -> bool
has profile info?
- id(...) from builtins.PyCapsule
- id(*args, **kwargs)
Overloaded function.
1. id(rosetta.core.fragment.picking_old.vall.VallResidue) -> str
id of fragment source (e.g. pdb name)
2. id(self : rosetta.core.fragment.picking_old.vall.VallResidue, s : str) -> NoneType
id of fragment source (e.g. pdb name)
- omega(...) from builtins.PyCapsule
- omega(*args, **kwargs)
Overloaded function.
1. omega(rosetta.core.fragment.picking_old.vall.VallResidue) -> float
omega backbone torsion in degrees
2. omega(self : rosetta.core.fragment.picking_old.vall.VallResidue, val : float) -> NoneType
omega backbone torsion in degrees
- phi(...) from builtins.PyCapsule
- phi(*args, **kwargs)
Overloaded function.
1. phi(rosetta.core.fragment.picking_old.vall.VallResidue) -> float
phi backbone torsion in degrees
2. phi(self : rosetta.core.fragment.picking_old.vall.VallResidue, val : float) -> NoneType
phi backbone torsion in degrees
- position_index(...) from builtins.PyCapsule
- position_index(*args, **kwargs)
Overloaded function.
1. position_index(rosetta.core.fragment.picking_old.vall.VallResidue) -> int
stores the 1-based indexing for accessing this residue
via VallSection::operator []
2. position_index(self : rosetta.core.fragment.picking_old.vall.VallResidue, idx : int) -> NoneType
stores the 1-based indexing for accessing this residue
via VallSection::operator []
- profile(...) from builtins.PyCapsule
- profile(*args, **kwargs)
Overloaded function.
1. profile(rosetta.core.fragment.picking_old.vall.VallResidue) -> rosetta.utility.vector1_double
per amino acid profile data
2. profile(self : rosetta.core.fragment.picking_old.vall.VallResidue, v : rosetta.utility.vector1_double) -> NoneType
per amino acid profile data
- psi(...) from builtins.PyCapsule
- psi(*args, **kwargs)
Overloaded function.
1. psi(rosetta.core.fragment.picking_old.vall.VallResidue) -> float
psi backbone torsion in degrees
2. psi(self : rosetta.core.fragment.picking_old.vall.VallResidue, val : float) -> NoneType
psi backbone torsion in degrees
- resi(...) from builtins.PyCapsule
- resi(*args, **kwargs)
Overloaded function.
1. resi(rosetta.core.fragment.picking_old.vall.VallResidue) -> int
residue sequence number in source
2. resi(self : rosetta.core.fragment.picking_old.vall.VallResidue, i : int) -> NoneType
residue sequence number in source
- section_index(...) from builtins.PyCapsule
- section_index(*args, **kwargs)
Overloaded function.
1. section_index(rosetta.core.fragment.picking_old.vall.VallResidue) -> int
stores the 1-based indexing for accessing the VallSection
this residue is located in via VallLibrary::operator []
2. section_index(self : rosetta.core.fragment.picking_old.vall.VallResidue, idx : int) -> NoneType
stores the 1-based indexing for accessing the VallSection
this residue is located in via VallLibrary::operator []
- ss(...) from builtins.PyCapsule
- ss(*args, **kwargs)
Overloaded function.
1. ss(rosetta.core.fragment.picking_old.vall.VallResidue) -> str
one letter secondary structure code
2. ss(self : rosetta.core.fragment.picking_old.vall.VallResidue, c : str) -> NoneType
one letter secondary structure code
- x(...) from builtins.PyCapsule
- x(*args, **kwargs)
Overloaded function.
1. x(rosetta.core.fragment.picking_old.vall.VallResidue) -> float
x-coordinate of C-alpha
2. x(self : rosetta.core.fragment.picking_old.vall.VallResidue, val : float) -> NoneType
x-coordinate of C-alpha
- y(...) from builtins.PyCapsule
- y(*args, **kwargs)
Overloaded function.
1. y(rosetta.core.fragment.picking_old.vall.VallResidue) -> float
y-coordinate of C-alpha
2. y(self : rosetta.core.fragment.picking_old.vall.VallResidue, val : float) -> NoneType
y-coordinate of C-alpha
- z(...) from builtins.PyCapsule
- z(*args, **kwargs)
Overloaded function.
1. z(rosetta.core.fragment.picking_old.vall.VallResidue) -> float
z-coordinate of C-alpha
2. z(self : rosetta.core.fragment.picking_old.vall.VallResidue, val : float) -> NoneType
z-coordinate of C-alpha
|
class VallResidues(rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue) |
| |
wrapper for a collection of VallResidue
|
| |
- Method resolution order:
- VallResidues
- rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : rosetta.core.fragment.picking_old.vall.VallResidues, : rosetta.core.fragment.picking_old.vall.VallResidues) -> NoneType
2. __init__(rosetta.core.fragment.picking_old.vall.VallResidues) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.fragment.picking_old.vall.VallResidues, : rosetta.core.fragment.picking_old.vall.VallResidues) -> rosetta.core.fragment.picking_old.vall.VallResidues
Methods inherited from rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue:
- __bool__(...) from builtins.PyCapsule
- __bool__(rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue) -> bool
Check whether the list is nonempty
- __getitem__(...) from builtins.PyCapsule
- __getitem__(rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue, int) -> core::fragment::picking_old::vall::VallResidue
- __iter__(...) from builtins.PyCapsule
- __iter__(rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue) -> iterator
- __len__(...) from builtins.PyCapsule
- __len__(rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue) -> int
- __setitem__(...) from builtins.PyCapsule
- __setitem__(rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue, int, core::fragment::picking_old::vall::VallResidue) -> NoneType
- append(...) from builtins.PyCapsule
- append(rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue, core::fragment::picking_old::vall::VallResidue) -> NoneType
adds an element to the end
- back(...) from builtins.PyCapsule
- back(rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue) -> core::fragment::picking_old::vall::VallResidue
access the last element
- capacity(...) from builtins.PyCapsule
- capacity(std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> >) -> int
returns the number of elements that can be held in currently allocated storage
- clear(...) from builtins.PyCapsule
- clear(std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> >) -> NoneType
clears the contents
- erase(...) from builtins.PyCapsule
- erase(rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue, int) -> NoneType
erases element at index
- extend = _vector_extend_func(vec, othervec)
- # Vector compatibility: Adding 'extend' to all utility.vector* functions
- front(...) from builtins.PyCapsule
- front(rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue) -> core::fragment::picking_old::vall::VallResidue
access the first element
- l(...) from builtins.PyCapsule
- l(rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue) -> int
lower index
- max_size(...) from builtins.PyCapsule
- max_size(std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> >) -> int
returns the maximum possible number of elements
- pop(...) from builtins.PyCapsule
- pop(*args, **kwargs)
Overloaded function.
1. pop(rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue) -> core::fragment::picking_old::vall::VallResidue
remove and return last item
2. pop(rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue, int) -> core::fragment::picking_old::vall::VallResidue
remove and return item at index
- reserve(...) from builtins.PyCapsule
- reserve(std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> >, int) -> NoneType
reserves storage
- resize(...) from builtins.PyCapsule
- resize(rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue, int) -> NoneType
changes the number of elements stored
- shrink_to_fit(...) from builtins.PyCapsule
- shrink_to_fit(std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> >) -> NoneType
reduces memory usage by freeing unused memory
- u(...) from builtins.PyCapsule
- u(rosetta.utility.vector1_core_fragment_picking_old_vall_VallResidue) -> int
upper index
|
class VallSection(rosetta.core.fragment.picking_old.concepts.Book_core_fragment_picking_old_vall_VallResidues_t) |
| |
class implementing the Book concept for a continuous section of lines in the Vall library
|
| |
- Method resolution order:
- VallSection
- rosetta.core.fragment.picking_old.concepts.Book_core_fragment_picking_old_vall_VallResidues_t
- builtins.object
Methods defined here:
- __getitem__(...) from builtins.PyCapsule
- __getitem__(self : rosetta.core.fragment.picking_old.vall.VallSection, idx : int) -> rosetta.core.fragment.picking_old.vall.VallResidue
access a specific VallResidue within this section, 1-based indexing
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.core.fragment.picking_old.vall.VallSection) -> NoneType
2. __init__(self : rosetta.core.fragment.picking_old.vall.VallSection, : rosetta.core.fragment.picking_old.vall.VallSection) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- append_residue(...) from builtins.PyCapsule
- append_residue(self : rosetta.core.fragment.picking_old.vall.VallSection, r : rosetta.core.fragment.picking_old.vall.VallResidue) -> NoneType
append a residue to the end of this section
- index(...) from builtins.PyCapsule
- index(*args, **kwargs)
Overloaded function.
1. index(rosetta.core.fragment.picking_old.vall.VallSection) -> int
stores the 1-based indexing for accessing this section
via VallLibrary::operator []
2. index(self : rosetta.core.fragment.picking_old.vall.VallSection, idx : int) -> NoneType
stores the 1-based indexing for accessing this section
via VallLibrary::operator []
- reindex_residues(...) from builtins.PyCapsule
- reindex_residues(rosetta.core.fragment.picking_old.vall.VallSection) -> NoneType
re-index VallResidues within this library so they number 1 .. n
- reserve(...) from builtins.PyCapsule
- reserve(self : rosetta.core.fragment.picking_old.vall.VallSection, n : int) -> NoneType
ensure storage currently allocated for residues is at least the
given size
- tighten_memory(...) from builtins.PyCapsule
- tighten_memory(rosetta.core.fragment.picking_old.vall.VallSection) -> NoneType
tighten memory usage
Shrinks the capacity of the VallResidues by performing
a swap, so this operation will effectively require a
similar amount of memory as the current residue object.
Methods inherited from rosetta.core.fragment.picking_old.concepts.Book_core_fragment_picking_old_vall_VallResidues_t:
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.fragment.picking_old.concepts.Book_core_fragment_picking_old_vall_VallResidues_t, : rosetta.core.fragment.picking_old.concepts.Book_core_fragment_picking_old_vall_VallResidues_t) -> rosetta.core.fragment.picking_old.concepts.Book_core_fragment_picking_old_vall_VallResidues_t
- begin(...) from builtins.PyCapsule
- begin(*args, **kwargs)
Overloaded function.
1. begin(rosetta.core.fragment.picking_old.concepts.Book_core_fragment_picking_old_vall_VallResidues_t) -> __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue const*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >
2. begin(rosetta.core.fragment.picking_old.concepts.Book_core_fragment_picking_old_vall_VallResidues_t) -> __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >
- clear(...) from builtins.PyCapsule
- clear(rosetta.core.fragment.picking_old.concepts.Book_core_fragment_picking_old_vall_VallResidues_t) -> NoneType
- end(...) from builtins.PyCapsule
- end(*args, **kwargs)
Overloaded function.
1. end(rosetta.core.fragment.picking_old.concepts.Book_core_fragment_picking_old_vall_VallResidues_t) -> __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue const*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >
2. end(rosetta.core.fragment.picking_old.concepts.Book_core_fragment_picking_old_vall_VallResidues_t) -> __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >
- size(...) from builtins.PyCapsule
- size(rosetta.core.fragment.picking_old.concepts.Book_core_fragment_picking_old_vall_VallResidues_t) -> int
|
class VallSections(rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection) |
| |
wrapper for a collection of VallSection
|
| |
- Method resolution order:
- VallSections
- rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : rosetta.core.fragment.picking_old.vall.VallSections, : rosetta.core.fragment.picking_old.vall.VallSections) -> NoneType
2. __init__(rosetta.core.fragment.picking_old.vall.VallSections) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.fragment.picking_old.vall.VallSections, : rosetta.core.fragment.picking_old.vall.VallSections) -> rosetta.core.fragment.picking_old.vall.VallSections
Methods inherited from rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection:
- __bool__(...) from builtins.PyCapsule
- __bool__(rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection) -> bool
Check whether the list is nonempty
- __getitem__(...) from builtins.PyCapsule
- __getitem__(rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection, int) -> core::fragment::picking_old::vall::VallSection
- __iter__(...) from builtins.PyCapsule
- __iter__(rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection) -> iterator
- __len__(...) from builtins.PyCapsule
- __len__(rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection) -> int
- __setitem__(...) from builtins.PyCapsule
- __setitem__(rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection, int, core::fragment::picking_old::vall::VallSection) -> NoneType
- append(...) from builtins.PyCapsule
- append(rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection, core::fragment::picking_old::vall::VallSection) -> NoneType
adds an element to the end
- back(...) from builtins.PyCapsule
- back(rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection) -> core::fragment::picking_old::vall::VallSection
access the last element
- capacity(...) from builtins.PyCapsule
- capacity(std::vector<core::fragment::picking_old::vall::VallSection, std::allocator<core::fragment::picking_old::vall::VallSection> >) -> int
returns the number of elements that can be held in currently allocated storage
- clear(...) from builtins.PyCapsule
- clear(std::vector<core::fragment::picking_old::vall::VallSection, std::allocator<core::fragment::picking_old::vall::VallSection> >) -> NoneType
clears the contents
- erase(...) from builtins.PyCapsule
- erase(rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection, int) -> NoneType
erases element at index
- extend = _vector_extend_func(vec, othervec)
- # Vector compatibility: Adding 'extend' to all utility.vector* functions
- front(...) from builtins.PyCapsule
- front(rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection) -> core::fragment::picking_old::vall::VallSection
access the first element
- l(...) from builtins.PyCapsule
- l(rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection) -> int
lower index
- max_size(...) from builtins.PyCapsule
- max_size(std::vector<core::fragment::picking_old::vall::VallSection, std::allocator<core::fragment::picking_old::vall::VallSection> >) -> int
returns the maximum possible number of elements
- pop(...) from builtins.PyCapsule
- pop(*args, **kwargs)
Overloaded function.
1. pop(rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection) -> core::fragment::picking_old::vall::VallSection
remove and return last item
2. pop(rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection, int) -> core::fragment::picking_old::vall::VallSection
remove and return item at index
- reserve(...) from builtins.PyCapsule
- reserve(std::vector<core::fragment::picking_old::vall::VallSection, std::allocator<core::fragment::picking_old::vall::VallSection> >, int) -> NoneType
reserves storage
- resize(...) from builtins.PyCapsule
- resize(rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection, int) -> NoneType
changes the number of elements stored
- shrink_to_fit(...) from builtins.PyCapsule
- shrink_to_fit(std::vector<core::fragment::picking_old::vall::VallSection, std::allocator<core::fragment::picking_old::vall::VallSection> >) -> NoneType
reduces memory usage by freeing unused memory
- u(...) from builtins.PyCapsule
- u(rosetta.utility.vector1_core_fragment_picking_old_vall_VallSection) -> int
upper index
| |