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- builtins.object
-
- VallFragmentGen
-
- LengthGen
- SecStructGen
class LengthGen(VallFragmentGen) |
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the default constant length fragment Vall ExtentGenerator
assumes that Pages in the Book are stored in a container
capable of returning a RandomAccessIterator, such as std::vector
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- Method resolution order:
- LengthGen
- VallFragmentGen
- builtins.object
Methods defined here:
- __call__(...) from builtins.PyCapsule
- __call__(self : rosetta.core.fragment.picking_old.vall.gen.LengthGen, extent_begin : __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue const*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >, section_end : __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue const*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >) -> rosetta.core.fragment.picking_old.concepts.Extent___gnu_cxx___normal_iterator_const_core_fragment_picking_old_vall_VallResidue_*_std_vector_core_fragment_picking_old_vall_VallResidue_std_allocator_core_fragment_picking_old_vall_VallResidue_t
return the desired fragment extent w/requested fragment size
valid (true) extent if the end of the extent does not go past the
section_end, invalid (false) extent otherwise
we assume VallResidueIterator is a type of RandomAccessIterator, such as
those used in std::vector
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(self : handle, frag_size : int) -> NoneType
3. __init__(handle, rosetta.core.fragment.picking_old.vall.gen.LengthGen) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.fragment.picking_old.vall.gen.LengthGen, rval : rosetta.core.fragment.picking_old.vall.gen.LengthGen) -> rosetta.core.fragment.picking_old.vall.gen.LengthGen
copy assignment
- clone(...) from builtins.PyCapsule
- clone(rosetta.core.fragment.picking_old.vall.gen.LengthGen) -> rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen
clone this object
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class SecStructGen(VallFragmentGen) |
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Generator that requires fragments to have a specific secondary
structure string.
assumes that Pages in the Book are stored in a container
capable of returning a RandomAccessIterator, such as std::vector
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- Method resolution order:
- SecStructGen
- VallFragmentGen
- builtins.object
Methods defined here:
- __call__(...) from builtins.PyCapsule
- __call__(self : rosetta.core.fragment.picking_old.vall.gen.SecStructGen, extent_begin : __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue const*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >, section_end : __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue const*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >) -> rosetta.core.fragment.picking_old.concepts.Extent___gnu_cxx___normal_iterator_const_core_fragment_picking_old_vall_VallResidue_*_std_vector_core_fragment_picking_old_vall_VallResidue_std_allocator_core_fragment_picking_old_vall_VallResidue_t
return the desired fragment extent w/ length equal to the
secondary structure string
Valid (true) extent if the extent has exactly the required
secondary structure string and the end of the extent does not go past
section_end. Invalid (false) extent otherwise.
we assume VallResidueIterator is a type of RandomAccessIterator, such as
those used in std::vector
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(self : handle, ss : str) -> NoneType
3. __init__(handle, rosetta.core.fragment.picking_old.vall.gen.SecStructGen) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.fragment.picking_old.vall.gen.SecStructGen, rval : rosetta.core.fragment.picking_old.vall.gen.SecStructGen) -> rosetta.core.fragment.picking_old.vall.gen.SecStructGen
copy assignment
- clone(...) from builtins.PyCapsule
- clone(rosetta.core.fragment.picking_old.vall.gen.SecStructGen) -> rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen
clone this object
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class VallFragmentGen(builtins.object) |
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base class Vall ExtentGenerator
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Methods defined here:
- __call__(...) from builtins.PyCapsule
- __call__(self : rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen, extent_begin : __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue const*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >, section_end : __gnu_cxx::__normal_iterator<core::fragment::picking_old::vall::VallResidue const*, std::vector<core::fragment::picking_old::vall::VallResidue, std::allocator<core::fragment::picking_old::vall::VallResidue> > >) -> rosetta.core.fragment.picking_old.concepts.Extent___gnu_cxx___normal_iterator_const_core_fragment_picking_old_vall_VallResidue_*_std_vector_core_fragment_picking_old_vall_VallResidue_std_allocator_core_fragment_picking_old_vall_VallResidue_t
return the desired fragment extent
valid (true) extent if extent will be evaluated, invalid
(false) extent otherwise
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen) -> NoneType
2. __init__(rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen, rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen, rval : rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen) -> rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen
copy assignment
- clone(...) from builtins.PyCapsule
- clone(rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen) -> rosetta.core.fragment.picking_old.vall.gen.VallFragmentGen
clone this object
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