Bindings for utility::options namespace

Classes
		builtins.object Option ScalarOption ScalarOption_T__utility_options_BooleanOptionKey_bool_t BooleanOption ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t FileOption ScalarOption_T__utility_options_IntegerOptionKey_int_t IntegerOption ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t PathOption ScalarOption_T__utility_options_RealOptionKey_double_t RealOption ScalarOption_T__utility_options_StringOptionKey_std_string_t StringOption VectorOption VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t BooleanVectorOption VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t FileVectorOption VectorOption_T__utility_options_IntegerVectorOptionKey_int_t IntegerVectorOption VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t PathVectorOption VectorOption_T__utility_options_RealVectorOptionKey_double_t RealVectorOption VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t ResidueChainVectorOption VectorOption_T__utility_options_StringVectorOptionKey_std_string_t StringVectorOption OptionCollection OptionTypes rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t(rosetta.utility.keys.Key) OptionKey ScalarOptionKey AnyOptionKey BooleanOptionKey FileOptionKey IntegerOptionKey PathOptionKey RealOptionKey StringOptionKey VectorOptionKey AnyVectorOptionKey BooleanVectorOptionKey FileVectorOptionKey IntegerVectorOptionKey PathVectorOptionKey RealVectorOptionKey ResidueChainVectorOptionKey StringVectorOptionKey   class AnyOptionKey(ScalarOptionKey)     Automatic hidden index key for any scalar-valued options     Method resolution order: AnyOptionKey ScalarOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.utility.options.AnyOptionKey, str) -> NoneType   doc   3. __init__(handle, rosetta.utility.options.AnyOptionKey, str, str) -> NoneType   doc   4. __init__(self : handle, key : rosetta.utility.options.AnyOptionKey, id_a : str, identifier_a : str, code_a : str) -> NoneType   5. __init__(self : handle, key : rosetta.utility.keys.Key) -> NoneType   6. __init__(handle, rosetta.utility.keys.Key, str) -> NoneType   doc   7. __init__(handle, rosetta.utility.keys.Key, str, str) -> NoneType   doc   8. __init__(self : handle, key : rosetta.utility.keys.Key, id_a : str, identifier_a : str, code_a : str) -> NoneType   9. __init__(handle, str) -> NoneType   doc   10. __init__(handle, str, str) -> NoneType   doc   11. __init__(self : handle, id_a : str, identifier_a : str, code_a : str) -> NoneType   12. __init__(handle, rosetta.utility.options.AnyOptionKey) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.AnyOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.AnyOptionKey   Key assignment   2. assign(self : rosetta.utility.options.AnyOptionKey,  : rosetta.utility.options.AnyOptionKey) -> rosetta.utility.options.AnyOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.AnyOptionKey) -> rosetta.utility.options.AnyOptionKey   Clone this Methods inherited from ScalarOptionKey: scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.ScalarOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.ScalarOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class AnyVectorOptionKey(VectorOptionKey)     Automatic hidden index key for any vector-valued options     Method resolution order: AnyVectorOptionKey VectorOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.utility.options.AnyVectorOptionKey, str) -> NoneType   doc   3. __init__(handle, rosetta.utility.options.AnyVectorOptionKey, str, str) -> NoneType   doc   4. __init__(self : handle, key : rosetta.utility.options.AnyVectorOptionKey, id_a : str, identifier_a : str, code_a : str) -> NoneType   5. __init__(self : handle, key : rosetta.utility.keys.Key) -> NoneType   6. __init__(handle, rosetta.utility.keys.Key, str) -> NoneType   doc   7. __init__(handle, rosetta.utility.keys.Key, str, str) -> NoneType   doc   8. __init__(self : handle, key : rosetta.utility.keys.Key, id_a : str, identifier_a : str, code_a : str) -> NoneType   9. __init__(handle, str) -> NoneType   doc   10. __init__(handle, str, str) -> NoneType   doc   11. __init__(self : handle, id_a : str, identifier_a : str, code_a : str) -> NoneType   12. __init__(handle, rosetta.utility.options.AnyVectorOptionKey) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.AnyVectorOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.AnyVectorOptionKey   Key assignment   2. assign(self : rosetta.utility.options.AnyVectorOptionKey,  : rosetta.utility.options.AnyVectorOptionKey) -> rosetta.utility.options.AnyVectorOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.AnyVectorOptionKey) -> rosetta.utility.options.AnyVectorOptionKey   Clone this Methods inherited from VectorOptionKey: scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.VectorOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.VectorOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class BooleanOption(ScalarOption_T__utility_options_BooleanOptionKey_bool_t)     Program boolean option class     Method resolution order: BooleanOption ScalarOption_T__utility_options_BooleanOptionKey_bool_t ScalarOption Option builtins.object Methods defined here: NoDefault(...) from builtins.PyCapsule NoDefault(key_a : rosetta.utility.options.BooleanOptionKey, description_a : str) -> rosetta.utility.options.BooleanOption   Key + description no-default named constructor __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, key_a : rosetta.utility.options.BooleanOptionKey, description_a : str) -> NoneType   3. __init__(handle, rosetta.utility.options.BooleanOption) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.utility.options.BooleanOption,  : rosetta.utility.options.BooleanOption) -> rosetta.utility.options.BooleanOption clone(...) from builtins.PyCapsule clone(rosetta.utility.options.BooleanOption) -> rosetta.utility.options.BooleanOption   Clone this default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.BooleanOption) -> str   Default value string representation equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.BooleanOption) -> str   =Value string representation is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.BooleanOption, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.BooleanOption, value_str : str) -> bool   Is a string readable as this option's value type? legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.BooleanOption) -> str   Legal value string representation type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.BooleanOption) -> str   Option type code string representation value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.BooleanOption) -> str   Value string representation Methods inherited from ScalarOption_T__utility_options_BooleanOptionKey_bool_t: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. __call__(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. activate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_str : str) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> rosetta.utility.options.ScalarOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. clear(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clear code(...) from builtins.PyCapsule code(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. deactivate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Deactivate def(...) from builtins.PyCapsule def(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> int default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, option : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. default_value(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool description(...) from builtins.PyCapsule description(*args, **kwargs) Overloaded function.   1. description(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str   2. description(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, sd : str) -> NoneType has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.options.BooleanOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. legal(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> NoneType   2. legal_check(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool legal_value(...) from builtins.PyCapsule legal_value(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> bool lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. lower(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.Bound_bool_t n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> int n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a ScalarOption & return type. short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str   2. short_description(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, s : str) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t size(...) from builtins.PyCapsule size(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. to_default(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. upper(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.Bound_bool_t user(...) from builtins.PyCapsule user(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool user_or(...) from builtins.PyCapsule user_or(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> bool value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. value(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool value_or(...) from builtins.PyCapsule value_or(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> bool Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType   class BooleanOptionKey(ScalarOptionKey)     Automatic hidden index key for boolean options     Method resolution order: BooleanOptionKey ScalarOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.utility.options.BooleanOptionKey, str) -> NoneType   doc   3. __init__(handle, rosetta.utility.options.BooleanOptionKey, str, str) -> NoneType   doc   4. __init__(self : handle, key : rosetta.utility.options.BooleanOptionKey, id_a : str, identifier_a : str, code_a : str) -> NoneType   5. __init__(self : handle, key : rosetta.utility.keys.Key) -> NoneType   6. __init__(handle, rosetta.utility.keys.Key, str) -> NoneType   doc   7. __init__(handle, rosetta.utility.keys.Key, str, str) -> NoneType   doc   8. __init__(self : handle, key : rosetta.utility.keys.Key, id_a : str, identifier_a : str, code_a : str) -> NoneType   9. __init__(handle, str) -> NoneType   doc   10. __init__(handle, str, str) -> NoneType   doc   11. __init__(self : handle, id_a : str, identifier_a : str, code_a : str) -> NoneType   12. __init__(handle, rosetta.utility.options.BooleanOptionKey) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.BooleanOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.BooleanOptionKey   Key assignment   2. assign(self : rosetta.utility.options.BooleanOptionKey,  : rosetta.utility.options.BooleanOptionKey) -> rosetta.utility.options.BooleanOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.BooleanOptionKey) -> rosetta.utility.options.BooleanOptionKey   Clone this Methods inherited from ScalarOptionKey: scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.ScalarOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.ScalarOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class BooleanVectorOption(VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t)     Program boolean vector option class     Method resolution order: BooleanVectorOption VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t VectorOption Option builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, key_a : rosetta.utility.options.BooleanVectorOptionKey, description_a : str) -> NoneType   3. __init__(handle, rosetta.utility.options.BooleanVectorOption) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.utility.options.BooleanVectorOption,  : rosetta.utility.options.BooleanVectorOption) -> rosetta.utility.options.BooleanVectorOption clone(...) from builtins.PyCapsule clone(rosetta.utility.options.BooleanVectorOption) -> rosetta.utility.options.BooleanVectorOption   Clone this is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.BooleanVectorOption, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.BooleanVectorOption, value_str : str) -> bool   Is a string readable as this option's value type? legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.BooleanVectorOption) -> str   Legal value string representation type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.BooleanVectorOption) -> str   Option type code string representation Methods inherited from VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : rosetta.utility.vector1_bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   3. __call__(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.vector1_bool   4. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, i : int) -> bool __getitem__(...) from builtins.PyCapsule __getitem__(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, i : int) -> bool activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. activate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_str : str) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> rosetta.utility.options.VectorOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. clear(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clear code(...) from builtins.PyCapsule code(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. deactivate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Deactivate def(...) from builtins.PyCapsule def(*args, **kwargs) Overloaded function.   1. def(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. def(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   3. def(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : rosetta.utility.vector1_bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, option : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : rosetta.utility.vector1_bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   3. default_value(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.vector1_bool   4. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, i : int) -> bool description(...) from builtins.PyCapsule description(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str fixed_size(...) from builtins.PyCapsule fixed_size(*args, **kwargs) Overloaded function.   1. fixed_size(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool   2. fixed_size(rosetta.utility.options.VectorOption) -> bool   Fixed number of values required? has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool has_value(...) from builtins.PyCapsule has_value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value : bool) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.options.BooleanVectorOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. legal(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> NoneType   2. legal_check(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool legal_default_size(...) from builtins.PyCapsule legal_default_size(*args, **kwargs) Overloaded function.   1. legal_default_size(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool   2. legal_default_size(rosetta.utility.options.VectorOption) -> bool   Legal default value size? legal_default_value(...) from builtins.PyCapsule legal_default_value(*args, **kwargs) Overloaded function.   1. legal_default_value(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool   2. legal_default_value(rosetta.utility.options.VectorOption) -> bool   Legal or inactive default value? legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool legal_size(...) from builtins.PyCapsule legal_size(*args, **kwargs) Overloaded function.   1. legal_size(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool   2. legal_size(rosetta.utility.options.VectorOption) -> bool   Legal value size? legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool legal_value(...) from builtins.PyCapsule legal_value(*args, **kwargs) Overloaded function.   1. legal_value(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool   2. legal_value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> bool   3. legal_value(rosetta.utility.options.VectorOption) -> bool   Legal value? lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. lower(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.Bound_bool_t n(...) from builtins.PyCapsule n(*args, **kwargs) Overloaded function.   1. n(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. n(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> int   3. n(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Fixed number of values required assignment   4. n(rosetta.utility.options.VectorOption) -> int   Fixed number of values required (zero if none) n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> int n_lower(...) from builtins.PyCapsule n_lower(*args, **kwargs) Overloaded function.   1. n_lower(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. n_lower(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> int   3. n_lower(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Lower number of values allowed assignment   4. n_lower(rosetta.utility.options.VectorOption) -> int   Lower number of values allowed (zero if none) n_upper(...) from builtins.PyCapsule n_upper(*args, **kwargs) Overloaded function.   1. n_upper(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. n_upper(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> int   3. n_upper(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Upper number of values allowed assignment   4. n_upper(rosetta.utility.options.VectorOption) -> int   Upper number of values allowed (zero if none) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str push_back(...) from builtins.PyCapsule push_back(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a VectorOption & return type. This will separate arguments into  blocks grouped by quotes, and then separate the non-quote-delimited  arguments by whitespace short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str   2. short_description(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, s : str) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t size(...) from builtins.PyCapsule size(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. to_default(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. upper(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.Bound_bool_t user(...) from builtins.PyCapsule user(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool user_or(...) from builtins.PyCapsule user_or(*args, **kwargs) Overloaded function.   1. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : rosetta.utility.vector1_bool) -> rosetta.utility.vector1_bool   2. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, i : int, value_a : bool) -> bool value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : rosetta.utility.vector1_bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   3. value(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.vector1_bool   4. value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, i : int) -> bool value_or(...) from builtins.PyCapsule value_or(*args, **kwargs) Overloaded function.   1. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : rosetta.utility.vector1_bool) -> rosetta.utility.vector1_bool   2. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, i : int, value_a : bool) -> bool value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType   class BooleanVectorOptionKey(VectorOptionKey)     Automatic hidden index key for boolean options     Method resolution order: BooleanVectorOptionKey VectorOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.utility.options.BooleanVectorOptionKey, str) -> NoneType   doc   3. __init__(handle, rosetta.utility.options.BooleanVectorOptionKey, str, str) -> NoneType   doc   4. __init__(self : handle, key : rosetta.utility.options.BooleanVectorOptionKey, id_a : str, identifier_a : str, code_a : str) -> NoneType   5. __init__(self : handle, key : rosetta.utility.keys.Key) -> NoneType   6. __init__(handle, rosetta.utility.keys.Key, str) -> NoneType   doc   7. __init__(handle, rosetta.utility.keys.Key, str, str) -> NoneType   doc   8. __init__(self : handle, key : rosetta.utility.keys.Key, id_a : str, identifier_a : str, code_a : str) -> NoneType   9. __init__(handle, str) -> NoneType   doc   10. __init__(handle, str, str) -> NoneType   doc   11. __init__(self : handle, id_a : str, identifier_a : str, code_a : str) -> NoneType   12. __init__(handle, rosetta.utility.options.BooleanVectorOptionKey) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.BooleanVectorOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.BooleanVectorOptionKey   Key assignment   2. assign(self : rosetta.utility.options.BooleanVectorOptionKey,  : rosetta.utility.options.BooleanVectorOptionKey) -> rosetta.utility.options.BooleanVectorOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.BooleanVectorOptionKey) -> rosetta.utility.options.BooleanVectorOptionKey   Clone this Methods inherited from VectorOptionKey: scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.VectorOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.VectorOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class FileOption(ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t)     Program file option class     Method resolution order: FileOption ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t ScalarOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(self : rosetta.utility.options.FileOption, value_a : str) -> rosetta.utility.options.FileOption   Value assignment __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, key_a : rosetta.utility.options.FileOptionKey, description_a : str) -> NoneType   3. __init__(handle, rosetta.utility.options.FileOption) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.utility.options.FileOption,  : rosetta.utility.options.FileOption) -> rosetta.utility.options.FileOption clone(...) from builtins.PyCapsule clone(rosetta.utility.options.FileOption) -> rosetta.utility.options.FileOption   Clone this def(...) from builtins.PyCapsule def(self : rosetta.utility.options.FileOption, value_a : str) -> rosetta.utility.options.FileOption   Default value assignment default_value(...) from builtins.PyCapsule default_value(self : rosetta.utility.options.FileOption, value_a : str) -> rosetta.utility.options.FileOption   Default value assignment is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.FileOption, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.FileOption,  : str) -> bool   Is a string readable as this option's value type? type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.FileOption) -> str   Option type code string representation value(...) from builtins.PyCapsule value(self : rosetta.utility.options.FileOption, value_a : str) -> rosetta.utility.options.FileOption   Value assignment Methods inherited from ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t: activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. activate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_str : str) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> rosetta.utility.options.ScalarOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. clear(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clear code(...) from builtins.PyCapsule code(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. deactivate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Deactivate default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, option : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t description(...) from builtins.PyCapsule description(*args, **kwargs) Overloaded function.   1. description(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str   2. description(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, sd : str) -> NoneType equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.options.FileOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. legal(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> NoneType   2. legal_check(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str legal_value(...) from builtins.PyCapsule legal_value(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> bool lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. lower(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.Bound_utility_file_FileName_t n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> int n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a ScalarOption & return type. short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str   2. short_description(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, s : str) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t size(...) from builtins.PyCapsule size(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. to_default(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. upper(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.Bound_utility_file_FileName_t user(...) from builtins.PyCapsule user(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool user_or(...) from builtins.PyCapsule user_or(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.file.FileName value_or(...) from builtins.PyCapsule value_or(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.file.FileName value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType   class FileOptionKey(ScalarOptionKey)     Automatic hidden index key for file options     Method resolution order: FileOptionKey ScalarOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.utility.options.FileOptionKey, str) -> NoneType   doc   3. __init__(handle, rosetta.utility.options.FileOptionKey, str, str) -> NoneType   doc   4. __init__(self : handle, key : rosetta.utility.options.FileOptionKey, id_a : str, identifier_a : str, code_a : str) -> NoneType   5. __init__(self : handle, key : rosetta.utility.keys.Key) -> NoneType   6. __init__(handle, rosetta.utility.keys.Key, str) -> NoneType   doc   7. __init__(handle, rosetta.utility.keys.Key, str, str) -> NoneType   doc   8. __init__(self : handle, key : rosetta.utility.keys.Key, id_a : str, identifier_a : str, code_a : str) -> NoneType   9. __init__(handle, str) -> NoneType   doc   10. __init__(handle, str, str) -> NoneType   doc   11. __init__(self : handle, id_a : str, identifier_a : str, code_a : str) -> NoneType   12. __init__(handle, rosetta.utility.options.FileOptionKey) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.FileOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.FileOptionKey   Key assignment   2. assign(self : rosetta.utility.options.FileOptionKey,  : rosetta.utility.options.FileOptionKey) -> rosetta.utility.options.FileOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.FileOptionKey) -> rosetta.utility.options.FileOptionKey   Clone this Methods inherited from ScalarOptionKey: scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.ScalarOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.ScalarOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class FileVectorOption(VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t)     Program file vector option class     Method resolution order: FileVectorOption VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t VectorOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(self : rosetta.utility.options.FileVectorOption, value_a : str) -> rosetta.utility.options.FileVectorOption   Value assignment __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, key_a : rosetta.utility.options.FileVectorOptionKey, description_a : str) -> NoneType   3. __init__(handle, rosetta.utility.options.FileVectorOption) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.utility.options.FileVectorOption,  : rosetta.utility.options.FileVectorOption) -> rosetta.utility.options.FileVectorOption clone(...) from builtins.PyCapsule clone(rosetta.utility.options.FileVectorOption) -> rosetta.utility.options.FileVectorOption   Clone this def(...) from builtins.PyCapsule def(self : rosetta.utility.options.FileVectorOption, value_a : str) -> rosetta.utility.options.FileVectorOption   Default value assignment default_value(...) from builtins.PyCapsule default_value(self : rosetta.utility.options.FileVectorOption, value_a : str) -> rosetta.utility.options.FileVectorOption   Default value assignment is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.FileVectorOption, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.FileVectorOption,  : str) -> bool   Is a string readable as this option's value type? type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.FileVectorOption) -> str   Option type code string representation value(...) from builtins.PyCapsule value(self : rosetta.utility.options.FileVectorOption, value_a : str) -> rosetta.utility.options.FileVectorOption   Value assignment Methods inherited from VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t: __getitem__(...) from builtins.PyCapsule __getitem__(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, i : int) -> rosetta.utility.file.FileName activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. activate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_str : str) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> rosetta.utility.options.VectorOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. clear(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clear code(...) from builtins.PyCapsule code(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. deactivate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Deactivate default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, option : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t description(...) from builtins.PyCapsule description(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str fixed_size(...) from builtins.PyCapsule fixed_size(*args, **kwargs) Overloaded function.   1. fixed_size(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool   2. fixed_size(rosetta.utility.options.VectorOption) -> bool   Fixed number of values required? has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool has_value(...) from builtins.PyCapsule has_value(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value : rosetta.utility.file.FileName) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.options.FileVectorOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. legal(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> NoneType   2. legal_check(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool legal_default_size(...) from builtins.PyCapsule legal_default_size(*args, **kwargs) Overloaded function.   1. legal_default_size(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool   2. legal_default_size(rosetta.utility.options.VectorOption) -> bool   Legal default value size? legal_default_value(...) from builtins.PyCapsule legal_default_value(*args, **kwargs) Overloaded function.   1. legal_default_value(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool   2. legal_default_value(rosetta.utility.options.VectorOption) -> bool   Legal or inactive default value? legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool legal_size(...) from builtins.PyCapsule legal_size(*args, **kwargs) Overloaded function.   1. legal_size(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool   2. legal_size(rosetta.utility.options.VectorOption) -> bool   Legal value size? legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str legal_value(...) from builtins.PyCapsule legal_value(*args, **kwargs) Overloaded function.   1. legal_value(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool   2. legal_value(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> bool   3. legal_value(rosetta.utility.options.VectorOption) -> bool   Legal value? lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. lower(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.Bound_utility_file_FileName_t n(...) from builtins.PyCapsule n(*args, **kwargs) Overloaded function.   1. n(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. n(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> int   3. n(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Fixed number of values required assignment   4. n(rosetta.utility.options.VectorOption) -> int   Fixed number of values required (zero if none) n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> int n_lower(...) from builtins.PyCapsule n_lower(*args, **kwargs) Overloaded function.   1. n_lower(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. n_lower(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> int   3. n_lower(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Lower number of values allowed assignment   4. n_lower(rosetta.utility.options.VectorOption) -> int   Lower number of values allowed (zero if none) n_upper(...) from builtins.PyCapsule n_upper(*args, **kwargs) Overloaded function.   1. n_upper(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. n_upper(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> int   3. n_upper(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Upper number of values allowed assignment   4. n_upper(rosetta.utility.options.VectorOption) -> int   Upper number of values allowed (zero if none) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str push_back(...) from builtins.PyCapsule push_back(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a VectorOption & return type. This will separate arguments into  blocks grouped by quotes, and then separate the non-quote-delimited  arguments by whitespace short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str   2. short_description(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, s : str) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t size(...) from builtins.PyCapsule size(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. to_default(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. upper(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.Bound_utility_file_FileName_t user(...) from builtins.PyCapsule user(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool user_or(...) from builtins.PyCapsule user_or(*args, **kwargs) Overloaded function.   1. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.vector1_utility_file_FileName) -> rosetta.utility.vector1_utility_file_FileName   2. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, i : int, value_a : rosetta.utility.file.FileName) -> rosetta.utility.file.FileName value_or(...) from builtins.PyCapsule value_or(*args, **kwargs) Overloaded function.   1. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.vector1_utility_file_FileName) -> rosetta.utility.vector1_utility_file_FileName   2. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, i : int, value_a : rosetta.utility.file.FileName) -> rosetta.utility.file.FileName value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType   class FileVectorOptionKey(VectorOptionKey)     Automatic hidden index key for file options     Method resolution order: FileVectorOptionKey VectorOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.utility.options.FileVectorOptionKey, str) -> NoneType   doc   3. __init__(handle, rosetta.utility.options.FileVectorOptionKey, str, str) -> NoneType   doc   4. __init__(self : handle, key : rosetta.utility.options.FileVectorOptionKey, id_a : str, identifier_a : str, code_a : str) -> NoneType   5. __init__(self : handle, key : rosetta.utility.keys.Key) -> NoneType   6. __init__(handle, rosetta.utility.keys.Key, str) -> NoneType   doc   7. __init__(handle, rosetta.utility.keys.Key, str, str) -> NoneType   doc   8. __init__(self : handle, key : rosetta.utility.keys.Key, id_a : str, identifier_a : str, code_a : str) -> NoneType   9. __init__(handle, str) -> NoneType   doc   10. __init__(handle, str, str) -> NoneType   doc   11. __init__(self : handle, id_a : str, identifier_a : str, code_a : str) -> NoneType   12. __init__(handle, rosetta.utility.options.FileVectorOptionKey) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.FileVectorOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.FileVectorOptionKey   Key assignment   2. assign(self : rosetta.utility.options.FileVectorOptionKey,  : rosetta.utility.options.FileVectorOptionKey) -> rosetta.utility.options.FileVectorOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.FileVectorOptionKey) -> rosetta.utility.options.FileVectorOptionKey   Clone this Methods inherited from VectorOptionKey: scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.VectorOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.VectorOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class IntegerOption(ScalarOption_T__utility_options_IntegerOptionKey_int_t)     Program integer option class     Method resolution order: IntegerOption ScalarOption_T__utility_options_IntegerOptionKey_int_t ScalarOption Option builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, key_a : rosetta.utility.options.IntegerOptionKey, description_a : str) -> NoneType   3. __init__(handle, rosetta.utility.options.IntegerOption) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.utility.options.IntegerOption,  : rosetta.utility.options.IntegerOption) -> rosetta.utility.options.IntegerOption clone(...) from builtins.PyCapsule clone(rosetta.utility.options.IntegerOption) -> rosetta.utility.options.IntegerOption   Clone this is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.IntegerOption, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.IntegerOption, value_str : str) -> bool   Is a string readable as this option's value type? type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.IntegerOption) -> str   Option type code string representation Methods inherited from ScalarOption_T__utility_options_IntegerOptionKey_int_t: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. __call__(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> int activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. activate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_str : str) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> rosetta.utility.options.ScalarOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. clear(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clear code(...) from builtins.PyCapsule code(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. deactivate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Deactivate def(...) from builtins.PyCapsule def(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, option : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. default_value(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> int description(...) from builtins.PyCapsule description(*args, **kwargs) Overloaded function.   1. description(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str   2. description(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, sd : str) -> NoneType equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.options.IntegerOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. legal(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> NoneType   2. legal_check(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str legal_value(...) from builtins.PyCapsule legal_value(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> bool lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. lower(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.Bound_int_t n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> int n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a ScalarOption & return type. short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str   2. short_description(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, s : str) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t size(...) from builtins.PyCapsule size(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. to_default(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. upper(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.Bound_int_t user(...) from builtins.PyCapsule user(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool user_or(...) from builtins.PyCapsule user_or(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> int value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. value(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> int value_or(...) from builtins.PyCapsule value_or(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> int value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType   class IntegerOptionKey(ScalarOptionKey)     Automatic hidden index key for integer options     Method resolution order: IntegerOptionKey ScalarOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.utility.options.IntegerOptionKey, str) -> NoneType   doc   3. __init__(handle, rosetta.utility.options.IntegerOptionKey, str, str) -> NoneType   doc   4. __init__(self : handle, key : rosetta.utility.options.IntegerOptionKey, id_a : str, identifier_a : str, code_a : str) -> NoneType   5. __init__(self : handle, key : rosetta.utility.keys.Key) -> NoneType   6. __init__(handle, rosetta.utility.keys.Key, str) -> NoneType   doc   7. __init__(handle, rosetta.utility.keys.Key, str, str) -> NoneType   doc   8. __init__(self : handle, key : rosetta.utility.keys.Key, id_a : str, identifier_a : str, code_a : str) -> NoneType   9. __init__(handle, str) -> NoneType   doc   10. __init__(handle, str, str) -> NoneType   doc   11. __init__(self : handle, id_a : str, identifier_a : str, code_a : str) -> NoneType   12. __init__(handle, rosetta.utility.options.IntegerOptionKey) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.IntegerOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.IntegerOptionKey   Key assignment   2. assign(self : rosetta.utility.options.IntegerOptionKey,  : rosetta.utility.options.IntegerOptionKey) -> rosetta.utility.options.IntegerOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.IntegerOptionKey) -> rosetta.utility.options.IntegerOptionKey   Clone this Methods inherited from ScalarOptionKey: scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.ScalarOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.ScalarOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class IntegerVectorOption(VectorOption_T__utility_options_IntegerVectorOptionKey_int_t)     Program integer vector option class     Method resolution order: IntegerVectorOption VectorOption_T__utility_options_IntegerVectorOptionKey_int_t VectorOption Option builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, key_a : rosetta.utility.options.IntegerVectorOptionKey, description_a : str) -> NoneType   3. __init__(handle, rosetta.utility.options.IntegerVectorOption) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.utility.options.IntegerVectorOption,  : rosetta.utility.options.IntegerVectorOption) -> rosetta.utility.options.IntegerVectorOption clone(...) from builtins.PyCapsule clone(rosetta.utility.options.IntegerVectorOption) -> rosetta.utility.options.IntegerVectorOption   Clone this is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.IntegerVectorOption, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.IntegerVectorOption, value_str : str) -> bool   Is a string readable as this option's value type? type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.IntegerVectorOption) -> str   Option type code string representation Methods inherited from VectorOption_T__utility_options_IntegerVectorOptionKey_int_t: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   3. __call__(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.vector1_int   4. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, i : int) -> int __getitem__(...) from builtins.PyCapsule __getitem__(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, i : int) -> int activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. activate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_str : str) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> rosetta.utility.options.VectorOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. clear(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clear code(...) from builtins.PyCapsule code(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. deactivate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Deactivate def(...) from builtins.PyCapsule def(*args, **kwargs) Overloaded function.   1. def(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. def(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   3. def(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, option : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   3. default_value(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.vector1_int   4. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, i : int) -> int description(...) from builtins.PyCapsule description(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str fixed_size(...) from builtins.PyCapsule fixed_size(*args, **kwargs) Overloaded function.   1. fixed_size(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool   2. fixed_size(rosetta.utility.options.VectorOption) -> bool   Fixed number of values required? has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool has_value(...) from builtins.PyCapsule has_value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value : int) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.options.IntegerVectorOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. legal(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> NoneType   2. legal_check(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool legal_default_size(...) from builtins.PyCapsule legal_default_size(*args, **kwargs) Overloaded function.   1. legal_default_size(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool   2. legal_default_size(rosetta.utility.options.VectorOption) -> bool   Legal default value size? legal_default_value(...) from builtins.PyCapsule legal_default_value(*args, **kwargs) Overloaded function.   1. legal_default_value(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool   2. legal_default_value(rosetta.utility.options.VectorOption) -> bool   Legal or inactive default value? legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool legal_size(...) from builtins.PyCapsule legal_size(*args, **kwargs) Overloaded function.   1. legal_size(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool   2. legal_size(rosetta.utility.options.VectorOption) -> bool   Legal value size? legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str legal_value(...) from builtins.PyCapsule legal_value(*args, **kwargs) Overloaded function.   1. legal_value(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool   2. legal_value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> bool   3. legal_value(rosetta.utility.options.VectorOption) -> bool   Legal value? lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. lower(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.Bound_int_t n(...) from builtins.PyCapsule n(*args, **kwargs) Overloaded function.   1. n(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. n(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> int   3. n(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Fixed number of values required assignment   4. n(rosetta.utility.options.VectorOption) -> int   Fixed number of values required (zero if none) n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> int n_lower(...) from builtins.PyCapsule n_lower(*args, **kwargs) Overloaded function.   1. n_lower(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. n_lower(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> int   3. n_lower(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Lower number of values allowed assignment   4. n_lower(rosetta.utility.options.VectorOption) -> int   Lower number of values allowed (zero if none) n_upper(...) from builtins.PyCapsule n_upper(*args, **kwargs) Overloaded function.   1. n_upper(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. n_upper(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> int   3. n_upper(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Upper number of values allowed assignment   4. n_upper(rosetta.utility.options.VectorOption) -> int   Upper number of values allowed (zero if none) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str push_back(...) from builtins.PyCapsule push_back(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a VectorOption & return type. This will separate arguments into  blocks grouped by quotes, and then separate the non-quote-delimited  arguments by whitespace short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str   2. short_description(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, s : str) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t size(...) from builtins.PyCapsule size(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. to_default(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. upper(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.Bound_int_t user(...) from builtins.PyCapsule user(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool user_or(...) from builtins.PyCapsule user_or(*args, **kwargs) Overloaded function.   1. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.vector1_int   2. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, i : int, value_a : int) -> int value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   3. value(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.vector1_int   4. value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, i : int) -> int value_or(...) from builtins.PyCapsule value_or(*args, **kwargs) Overloaded function.   1. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.vector1_int   2. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, i : int, value_a : int) -> int value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType   class IntegerVectorOptionKey(VectorOptionKey)     Automatic hidden index key for integer options     Method resolution order: IntegerVectorOptionKey VectorOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.utility.options.IntegerVectorOptionKey, str) -> NoneType   doc   3. __init__(handle, rosetta.utility.options.IntegerVectorOptionKey, str, str) -> NoneType   doc   4. __init__(self : handle, key : rosetta.utility.options.IntegerVectorOptionKey, id_a : str, identifier_a : str, code_a : str) -> NoneType   5. __init__(self : handle, key : rosetta.utility.keys.Key) -> NoneType   6. __init__(handle, rosetta.utility.keys.Key, str) -> NoneType   doc   7. __init__(handle, rosetta.utility.keys.Key, str, str) -> NoneType   doc   8. __init__(self : handle, key : rosetta.utility.keys.Key, id_a : str, identifier_a : str, code_a : str) -> NoneType   9. __init__(handle, str) -> NoneType   doc   10. __init__(handle, str, str) -> NoneType   doc   11. __init__(self : handle, id_a : str, identifier_a : str, code_a : str) -> NoneType   12. __init__(handle, rosetta.utility.options.IntegerVectorOptionKey) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.IntegerVectorOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.IntegerVectorOptionKey   Key assignment   2. assign(self : rosetta.utility.options.IntegerVectorOptionKey,  : rosetta.utility.options.IntegerVectorOptionKey) -> rosetta.utility.options.IntegerVectorOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.IntegerVectorOptionKey) -> rosetta.utility.options.IntegerVectorOptionKey   Clone this Methods inherited from VectorOptionKey: scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.VectorOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.VectorOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class Option(builtins.object)     Program option interface class     Methods defined here: __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(rosetta.utility.options.Option) -> rosetta.utility.options.Option   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.Option) -> bool   Active?  That is, the option has some value, either the default one or specified on the command line. been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.Option) -> bool   Can another value be added and stay within any size constraints? check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType cl_value(...) from builtins.PyCapsule cl_value(self : rosetta.utility.options.Option, value_str : str) -> rosetta.utility.options.Option   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(rosetta.utility.options.Option) -> rosetta.utility.options.Option   Clear clone(...) from builtins.PyCapsule clone(rosetta.utility.options.Option) -> rosetta.utility.options.Option   Clone this code(...) from builtins.PyCapsule code(rosetta.utility.options.Option) -> str   Code copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.Option, other : rosetta.utility.options.Option) -> NoneType   Copy operation -- requires that other match the type of this. deactivate(...) from builtins.PyCapsule deactivate(rosetta.utility.options.Option) -> rosetta.utility.options.Option   Deactivate default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.Option) -> bool   Default active? default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.Option) -> bool   Default inactive? default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.Option) -> int   Default size (number of default values) default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.Option) -> str   Default value string representation description(...) from builtins.PyCapsule description(rosetta.utility.options.Option) -> str   Description equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.Option) -> str   =Value string representation has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.Option) -> bool   Has a default? id(...) from builtins.PyCapsule id(rosetta.utility.options.Option) -> str   ID identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.Option) -> str   Identifier is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? key(...) from builtins.PyCapsule key(rosetta.utility.options.Option) -> rosetta.utility.options.OptionKey   Key legal(...) from builtins.PyCapsule legal(rosetta.utility.options.Option) -> bool   Legal value? legal_check(...) from builtins.PyCapsule legal_check(rosetta.utility.options.Option) -> NoneType   Legal value check legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.Option) -> bool   Legal or inactive default value? legal_default_check(...) from builtins.PyCapsule legal_default_check(rosetta.utility.options.Option) -> NoneType   Legal default value check legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.Option) -> bool   Legal default value check: Report and return error state legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.Option) -> bool   Legal value limits check: Report and return error state legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.Option) -> bool   Legal value check: Report and return error state legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.Option) -> bool   Legal size limits check: Report and return error state legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.Option) -> bool   Legal specifications check: Report and return error state legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.Option) -> str   Legal value string representation n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.Option) -> int   Number of default values (default size) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.Option) -> int   Number of values (size) name(...) from builtins.PyCapsule name(rosetta.utility.options.Option) -> str   Name raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.Option) -> str   Default value string representation raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.Option) -> str   Value string representation restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.Option, value_str : str) -> NoneType   The base class deserves a setter.  Why would it not have one? short_description(...) from builtins.PyCapsule short_description(rosetta.utility.options.Option) -> str   short_Description size(...) from builtins.PyCapsule size(rosetta.utility.options.Option) -> int   Size (number of values) size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.Option) -> str   Size constraint string representation specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.Option) -> NoneType   Required specified option check specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.Option) -> bool   Required specified option check: Report and return error state to_default(...) from builtins.PyCapsule to_default(rosetta.utility.options.Option) -> rosetta.utility.options.Option   Set to default value, if any type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation user(...) from builtins.PyCapsule user(rosetta.utility.options.Option) -> bool   User-specified?  That is, the option value was specified on the command line.  You should probably use active() instead in almost all cases! value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.Option) -> str   Value string representation   class OptionCollection(builtins.object)     Program options collection     Methods defined here: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanOptionKey) -> rosetta.utility.options.BooleanOption   Option by BooleanOptionKey   2. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanOptionKey, check_restricted_access : bool) -> rosetta.utility.options.BooleanOption   Option by BooleanOptionKey   3. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanOptionKey) -> rosetta.utility.options.BooleanOption   Option by BooleanOptionKey   4. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanOptionKey, check_restricted_access : bool) -> rosetta.utility.options.BooleanOption   Option by BooleanOptionKey   5. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerOptionKey) -> rosetta.utility.options.IntegerOption   Option by IntegerOptionKey   6. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerOptionKey, check_restricted_access : bool) -> rosetta.utility.options.IntegerOption   Option by IntegerOptionKey   7. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerOptionKey) -> rosetta.utility.options.IntegerOption   Option by IntegerOptionKey   8. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerOptionKey, check_restricted_access : bool) -> rosetta.utility.options.IntegerOption   Option by IntegerOptionKey   9. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealOptionKey) -> rosetta.utility.options.RealOption   Option by RealOptionKey   10. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealOptionKey, check_restricted_access : bool) -> rosetta.utility.options.RealOption   Option by RealOptionKey   11. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealOptionKey) -> rosetta.utility.options.RealOption   Option by RealOptionKey   12. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealOptionKey, check_restricted_access : bool) -> rosetta.utility.options.RealOption   Option by RealOptionKey   13. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringOptionKey) -> rosetta.utility.options.StringOption   Option by StringOptionKey   14. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringOptionKey, check_restricted_access : bool) -> rosetta.utility.options.StringOption   Option by StringOptionKey   15. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringOptionKey) -> rosetta.utility.options.StringOption   Option by StringOptionKey   16. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringOptionKey, check_restricted_access : bool) -> rosetta.utility.options.StringOption   Option by StringOptionKey   17. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileOptionKey) -> rosetta.utility.options.FileOption   Option by FileOptionKey   18. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileOptionKey, check_restricted_access : bool) -> rosetta.utility.options.FileOption   Option by FileOptionKey   19. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileOptionKey) -> rosetta.utility.options.FileOption   Option by FileOptionKey   20. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileOptionKey, check_restricted_access : bool) -> rosetta.utility.options.FileOption   Option by FileOptionKey   21. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathOptionKey) -> rosetta.utility.options.PathOption   Option by PathOptionKey   22. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathOptionKey, check_restricted_access : bool) -> rosetta.utility.options.PathOption   Option by PathOptionKey   23. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathOptionKey) -> rosetta.utility.options.PathOption   Option by PathOptionKey   24. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathOptionKey, check_restricted_access : bool) -> rosetta.utility.options.PathOption   Option by PathOptionKey   25. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyOptionKey) -> rosetta.utility.options.Option   Option by AnyOptionKey   26. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyOptionKey, check_restricted_access : bool) -> rosetta.utility.options.Option   Option by AnyOptionKey   27. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyOptionKey) -> rosetta.utility.options.Option   Option by AnyOptionKey   28. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyOptionKey, check_restricted_access : bool) -> rosetta.utility.options.Option   Option by AnyOptionKey   29. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanVectorOptionKey) -> rosetta.utility.options.BooleanVectorOption   VectorOption by BooleanVectorOptionKey   30. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.BooleanVectorOption   VectorOption by BooleanVectorOptionKey   31. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanVectorOptionKey) -> rosetta.utility.options.BooleanVectorOption   VectorOption by BooleanVectorOptionKey   32. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.BooleanVectorOption   VectorOption by BooleanVectorOptionKey   33. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerVectorOptionKey) -> rosetta.utility.options.IntegerVectorOption   VectorOption by IntegerVectorOptionKey   34. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.IntegerVectorOption   VectorOption by IntegerVectorOptionKey   35. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerVectorOptionKey) -> rosetta.utility.options.IntegerVectorOption   VectorOption by IntegerVectorOptionKey   36. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.IntegerVectorOption   VectorOption by IntegerVectorOptionKey   37. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealVectorOptionKey) -> rosetta.utility.options.RealVectorOption   VectorOption by RealVectorOptionKey   38. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.RealVectorOption   VectorOption by RealVectorOptionKey   39. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealVectorOptionKey) -> rosetta.utility.options.RealVectorOption   VectorOption by RealVectorOptionKey   40. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.RealVectorOption   VectorOption by RealVectorOptionKey   41. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.ResidueChainVectorOptionKey) -> rosetta.utility.options.ResidueChainVectorOption   VectorOption by ResidueChainVectorOptionKey   42. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.ResidueChainVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.ResidueChainVectorOption   VectorOption by ResidueChainVectorOptionKey   43. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.ResidueChainVectorOptionKey) -> rosetta.utility.options.ResidueChainVectorOption   VectorOption by ResidueChainVectorOptionKey   44. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.ResidueChainVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.ResidueChainVectorOption   VectorOption by ResidueChainVectorOptionKey   45. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringVectorOptionKey) -> rosetta.utility.options.StringVectorOption   VectorOption by StringVectorOptionKey   46. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.StringVectorOption   VectorOption by StringVectorOptionKey   47. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringVectorOptionKey) -> rosetta.utility.options.StringVectorOption   VectorOption by StringVectorOptionKey   48. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.StringVectorOption   VectorOption by StringVectorOptionKey   49. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileVectorOptionKey) -> rosetta.utility.options.FileVectorOption   VectorOption by FileVectorOptionKey   50. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.FileVectorOption   VectorOption by FileVectorOptionKey   51. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileVectorOptionKey) -> rosetta.utility.options.FileVectorOption   VectorOption by FileVectorOptionKey   52. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.FileVectorOption   VectorOption by FileVectorOptionKey   53. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathVectorOptionKey) -> rosetta.utility.options.PathVectorOption   VectorOption by PathVectorOptionKey   54. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.PathVectorOption   VectorOption by PathVectorOptionKey   55. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathVectorOptionKey) -> rosetta.utility.options.PathVectorOption   VectorOption by PathVectorOptionKey   56. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.PathVectorOption   VectorOption by PathVectorOptionKey   57. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyVectorOptionKey) -> rosetta.utility.options.VectorOption   VectorOption by AnyVectorOptionKey   58. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.VectorOption   VectorOption by AnyVectorOptionKey   59. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyVectorOptionKey) -> rosetta.utility.options.VectorOption   VectorOption by AnyVectorOptionKey   60. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyVectorOptionKey, check_restricted_access : bool) -> rosetta.utility.options.VectorOption   VectorOption by AnyVectorOptionKey   61. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.OptionKey) -> rosetta.utility.options.Option   Option by OptionKey   62. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.OptionKey, check_restricted_access : bool) -> rosetta.utility.options.Option   Option by OptionKey   63. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.OptionKey) -> rosetta.utility.options.Option   Option by OptionKey   64. __call__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.OptionKey, check_restricted_access : bool) -> rosetta.utility.options.Option   Option by OptionKey __getitem__(...) from builtins.PyCapsule __getitem__(*args, **kwargs) Overloaded function.   1. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanOptionKey) -> rosetta.utility.options.BooleanOption   OptionCollection[ BooleanOptionKey ]   2. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanOptionKey) -> rosetta.utility.options.BooleanOption   OptionCollection[ BooleanOptionKey ]   3. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerOptionKey) -> rosetta.utility.options.IntegerOption   OptionCollection[ IntegerOptionKey ]   4. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerOptionKey) -> rosetta.utility.options.IntegerOption   OptionCollection[ IntegerOptionKey ]   5. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealOptionKey) -> rosetta.utility.options.RealOption   OptionCollection[ RealOptionKey ]   6. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealOptionKey) -> rosetta.utility.options.RealOption   OptionCollection[ RealOptionKey ]   7. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringOptionKey) -> rosetta.utility.options.StringOption   OptionCollection[ StringOptionKey ]   8. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringOptionKey) -> rosetta.utility.options.StringOption   OptionCollection[ StringOptionKey ]   9. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileOptionKey) -> rosetta.utility.options.FileOption   OptionCollection[ FileOptionKey ]   10. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileOptionKey) -> rosetta.utility.options.FileOption   OptionCollection[ FileOptionKey ]   11. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathOptionKey) -> rosetta.utility.options.PathOption   OptionCollection[ PathOptionKey ]   12. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathOptionKey) -> rosetta.utility.options.PathOption   OptionCollection[ PathOptionKey ]   13. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyOptionKey) -> rosetta.utility.options.Option   OptionCollection[ AnyOptionKey ]   14. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyOptionKey) -> rosetta.utility.options.Option   OptionCollection[ AnyOptionKey ]   15. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanVectorOptionKey) -> rosetta.utility.options.BooleanVectorOption   OptionCollection[ BooleanVectorOptionKey ]   16. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanVectorOptionKey) -> rosetta.utility.options.BooleanVectorOption   OptionCollection[ BooleanVectorOptionKey ]   17. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerVectorOptionKey) -> rosetta.utility.options.IntegerVectorOption   OptionCollection[ IntegerVectorOptionKey ]   18. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerVectorOptionKey) -> rosetta.utility.options.IntegerVectorOption   OptionCollection[ IntegerVectorOptionKey ]   19. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealVectorOptionKey) -> rosetta.utility.options.RealVectorOption   OptionCollection[ RealVectorOptionKey ]   20. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealVectorOptionKey) -> rosetta.utility.options.RealVectorOption   OptionCollection[ RealVectorOptionKey ]   21. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.ResidueChainVectorOptionKey) -> rosetta.utility.options.ResidueChainVectorOption   OptionCollection[ ResidueChainVectorOptionKey ]   22. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.ResidueChainVectorOptionKey) -> rosetta.utility.options.ResidueChainVectorOption   OptionCollection[ ResidueChainVectorOptionKey ]   23. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringVectorOptionKey) -> rosetta.utility.options.StringVectorOption   OptionCollection[ StringVectorOptionKey ]   24. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringVectorOptionKey) -> rosetta.utility.options.StringVectorOption   OptionCollection[ StringVectorOptionKey ]   25. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileVectorOptionKey) -> rosetta.utility.options.FileVectorOption   OptionCollection[ FileVectorOptionKey ]   26. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileVectorOptionKey) -> rosetta.utility.options.FileVectorOption   OptionCollection[ FileVectorOptionKey ]   27. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathVectorOptionKey) -> rosetta.utility.options.PathVectorOption   OptionCollection[ PathVectorOptionKey ]   28. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathVectorOptionKey) -> rosetta.utility.options.PathVectorOption   OptionCollection[ PathVectorOptionKey ]   29. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyVectorOptionKey) -> rosetta.utility.options.VectorOption   OptionCollection[ AnyVectorOptionKey ]   30. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyVectorOptionKey) -> rosetta.utility.options.VectorOption   OptionCollection[ AnyVectorOptionKey ]   31. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.OptionKey) -> rosetta.utility.options.Option   OptionCollection[ OptionKey ]   32. __getitem__(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.OptionKey) -> rosetta.utility.options.Option   OptionCollection[ OptionKey ] __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.utility.options.OptionCollection) -> NoneType   2. __init__(self : rosetta.utility.options.OptionCollection,  : rosetta.utility.options.OptionCollection) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __str__(...) from builtins.PyCapsule __str__(rosetta.utility.options.OptionCollection) -> str add(...) from builtins.PyCapsule add(*args, **kwargs) Overloaded function.   1. add(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanOptionKey, description : str) -> rosetta.utility.options.BooleanOption   Add a BooleanOption   2. add(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerOptionKey, description : str) -> rosetta.utility.options.IntegerOption   Add an IntegerOption   3. add(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealOptionKey, description : str) -> rosetta.utility.options.RealOption   Add a RealOption   4. add(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringOptionKey, description : str) -> rosetta.utility.options.StringOption   Add a StringOption   5. add(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileOptionKey, description : str) -> rosetta.utility.options.FileOption   Add a FileOption   6. add(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathOptionKey, description : str) -> rosetta.utility.options.PathOption   Add a PathOption   7. add(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanVectorOptionKey, description : str) -> rosetta.utility.options.BooleanVectorOption   Add a BooleanVectorOption   8. add(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerVectorOptionKey, description : str) -> rosetta.utility.options.IntegerVectorOption   Add an IntegerVectorOption   9. add(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealVectorOptionKey, description : str) -> rosetta.utility.options.RealVectorOption   Add a RealVectorOption   10. add(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.ResidueChainVectorOptionKey, description : str) -> rosetta.utility.options.ResidueChainVectorOption   Add an ResidueChainVectorOption   11. add(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringVectorOptionKey, description : str) -> rosetta.utility.options.StringVectorOption   Add a StringVectorOption   12. add(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileVectorOptionKey, description : str) -> rosetta.utility.options.FileVectorOption   Add a FileVectorOption   13. add(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathVectorOptionKey, description : str) -> rosetta.utility.options.PathVectorOption   Add a PathVectorOption   14. add(self : rosetta.utility.options.OptionCollection, option : rosetta.utility.options.BooleanOption) -> rosetta.utility.options.BooleanOption   Add a BooleanOption   15. add(self : rosetta.utility.options.OptionCollection, option : rosetta.utility.options.IntegerOption) -> rosetta.utility.options.IntegerOption   Add an IntegerOption   16. add(self : rosetta.utility.options.OptionCollection, option : rosetta.utility.options.RealOption) -> rosetta.utility.options.RealOption   Add a RealOption   17. add(self : rosetta.utility.options.OptionCollection, option : rosetta.utility.options.StringOption) -> rosetta.utility.options.StringOption   Add a StringOption   18. add(self : rosetta.utility.options.OptionCollection, option : rosetta.utility.options.FileOption) -> rosetta.utility.options.FileOption   Add a FileOption   19. add(self : rosetta.utility.options.OptionCollection, option : rosetta.utility.options.PathOption) -> rosetta.utility.options.PathOption   Add a PathOption   20. add(self : rosetta.utility.options.OptionCollection, option : rosetta.utility.options.BooleanVectorOption) -> rosetta.utility.options.BooleanVectorOption   Add a BooleanVectorOption   21. add(self : rosetta.utility.options.OptionCollection, option : rosetta.utility.options.IntegerVectorOption) -> rosetta.utility.options.IntegerVectorOption   Add an IntegerVectorOption   22. add(self : rosetta.utility.options.OptionCollection, option : rosetta.utility.options.RealVectorOption) -> rosetta.utility.options.RealVectorOption   Add a RealVectorOption   23. add(self : rosetta.utility.options.OptionCollection, option : rosetta.utility.options.ResidueChainVectorOption) -> rosetta.utility.options.ResidueChainVectorOption   Add an ResidueChainVectorOption   24. add(self : rosetta.utility.options.OptionCollection, option : rosetta.utility.options.StringVectorOption) -> rosetta.utility.options.StringVectorOption   Add a StringVectorOption   25. add(self : rosetta.utility.options.OptionCollection, option : rosetta.utility.options.FileVectorOption) -> rosetta.utility.options.FileVectorOption   Add a FileVectorOption   26. add(self : rosetta.utility.options.OptionCollection, option : rosetta.utility.options.PathVectorOption) -> rosetta.utility.options.PathVectorOption   Add a PathVectorOption add_built_in_options(...) from builtins.PyCapsule add_built_in_options(rosetta.utility.options.OptionCollection) -> NoneType   Add the built-in options add_edits(...) from builtins.PyCapsule add_edits(items : rosetta.std.set_std_string_std_less_std_string_std_allocator_std_string_t) -> NoneType   Add to the set possible typos for a given word      These are strings with Levenshtein distance of 1  - Based off of the approach from http://norvig.com/spell-correct.html add_relevant(...) from builtins.PyCapsule add_relevant(key : rosetta.utility.options.OptionKey) -> NoneType   add OptionKey to list of application relevant options assign(...) from builtins.PyCapsule assign(self : rosetta.utility.options.OptionCollection,  : rosetta.utility.options.OptionCollection) -> rosetta.utility.options.OptionCollection check_key(...) from builtins.PyCapsule check_key(*args, **kwargs) Overloaded function.   1. check_key(key : rosetta.utility.options.OptionKey) -> NoneType   Check that a key's identifiers are legal   2. check_key(option : rosetta.utility.options.Option) -> NoneType   Check that an option's identifiers are legal check_specs(...) from builtins.PyCapsule check_specs(rosetta.utility.options.OptionCollection) -> NoneType   Check for problems in the option specifications check_values(...) from builtins.PyCapsule check_values(rosetta.utility.options.OptionCollection) -> NoneType   Check for problems in the option values cleaned(...) from builtins.PyCapsule cleaned(s : str) -> str   Cleaned option id with repeat colons condensed find_key_cl(...) from builtins.PyCapsule find_key_cl(key_string : str, cid : str, top : bool) -> str   Find a user-specified option key in a command line context       Searches up the context to find a match find_key_file(...) from builtins.PyCapsule find_key_file(key_string : str, cid : str, top : bool) -> str   Find a user-specified option key in an indented  context       Looks in the context to find a match get_argv(...) from builtins.PyCapsule get_argv(rosetta.utility.options.OptionCollection) -> str   Returns a copy of the concatenated argv strings that were initialized  in load(). has(...) from builtins.PyCapsule has(*args, **kwargs) Overloaded function.   1. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanOptionKey) -> bool   Is there an option with a BooleanOptionKey?   2. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerOptionKey) -> bool   Is there an option with an IntegerOptionKey?   3. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealOptionKey) -> bool   Is there an option with a RealOptionKey?   4. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringOptionKey) -> bool   Is there an option with a StringOptionKey?   5. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileOptionKey) -> bool   Is there an option with a FileOptionKey?   6. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathOptionKey) -> bool   Is there an option with a PathOptionKey?   7. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyOptionKey) -> bool   Is there an option with an AnyOptionKey?   8. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanVectorOptionKey) -> bool   Is there an option with a BooleanVectorOptionKey?   9. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerVectorOptionKey) -> bool   Is there an option with an IntegerVectorOptionKey?   10. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealVectorOptionKey) -> bool   Is there an option with a RealVectorOptionKey?   11. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.ResidueChainVectorOptionKey) -> bool   Is there an option with an IntegerVectorOptionKey?   12. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringVectorOptionKey) -> bool   Is there an option with a StringVectorOptionKey?   13. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileVectorOptionKey) -> bool   Is there an option with a FileVectorOptionKey?   14. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathVectorOptionKey) -> bool   Is there an option with a PathVectorOptionKey?   15. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyVectorOptionKey) -> bool   Is there an option with an AnyVectorOptionKey?   16. has(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.OptionKey) -> bool   Is there an option with an OptionKey? is_relevant(...) from builtins.PyCapsule is_relevant(key : rosetta.utility.options.OptionKey) -> bool   Checks if option has been registered as relevant. load(...) from builtins.PyCapsule load(*args, **kwargs) Overloaded function.   1. load(self : rosetta.utility.options.OptionCollection, args : rosetta.std.vector_std_string, free_args : bool) -> NoneType   Load the user-specified option values   2. load(self : rosetta.utility.options.OptionCollection, executable_name : str, arg_strings : rosetta.std.list_std_string_std_allocator_std_string_t, free_args : bool) -> NoneType   Load the user-specified option values load_options_from_file(...) from builtins.PyCapsule load_options_from_file(*args, **kwargs) Overloaded function.   1. load_options_from_file(self : rosetta.utility.options.OptionCollection, file_string : str) -> NoneType   Load all options in a flags file   2. load_options_from_file(self : rosetta.utility.options.OptionCollection, file_string : str, cid : str) -> NoneType   Load all options in a flags file load_options_from_file_exception(...) from builtins.PyCapsule load_options_from_file_exception(*args, **kwargs) Overloaded function.   1. load_options_from_file_exception(self : rosetta.utility.options.OptionCollection, file_string : str) -> NoneType   same as load_options_from_file, but throws exception instead of call to std::exit   2. load_options_from_file_exception(self : rosetta.utility.options.OptionCollection, file_string : str, cid : str) -> NoneType   same as load_options_from_file, but throws exception instead of call to std::exit lower_no_under(...) from builtins.PyCapsule lower_no_under(instring : str) -> str   Remove underscores and lowercase string merged(...) from builtins.PyCapsule merged(s : str, t : str) -> str   Merged option ids with the minimal suffix-prefix overlap, if any, removed n_part(...) from builtins.PyCapsule n_part(s : str) -> int   Number of parts in an option id n_part_prefix_match(...) from builtins.PyCapsule n_part_prefix_match(s : str, t : str) -> int   Number of prefix parts of two ids that match option(...) from builtins.PyCapsule option(*args, **kwargs) Overloaded function.   1. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanOptionKey) -> rosetta.utility.options.BooleanOption   Option by BooleanOptionKey   2. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanOptionKey) -> rosetta.utility.options.BooleanOption   Option by BooleanOptionKey   3. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerOptionKey) -> rosetta.utility.options.IntegerOption   Option by IntegerOptionKey   4. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerOptionKey) -> rosetta.utility.options.IntegerOption   Option by IntegerOptionKey   5. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealOptionKey) -> rosetta.utility.options.RealOption   Option by RealOptionKey   6. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealOptionKey) -> rosetta.utility.options.RealOption   Option by RealOptionKey   7. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringOptionKey) -> rosetta.utility.options.StringOption   Option by StringOptionKey   8. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringOptionKey) -> rosetta.utility.options.StringOption   Option by StringOptionKey   9. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileOptionKey) -> rosetta.utility.options.FileOption   Option by FileOptionKey   10. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileOptionKey) -> rosetta.utility.options.FileOption   Option by FileOptionKey   11. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathOptionKey) -> rosetta.utility.options.PathOption   Option by PathOptionKey   12. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathOptionKey) -> rosetta.utility.options.PathOption   Option by PathOptionKey   13. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyOptionKey) -> rosetta.utility.options.Option   Option by AnyOptionKey   14. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyOptionKey) -> rosetta.utility.options.Option   Option by AnyOptionKey   15. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanVectorOptionKey) -> rosetta.utility.options.BooleanVectorOption   VectorOption by BooleanVectorOptionKey   16. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.BooleanVectorOptionKey) -> rosetta.utility.options.BooleanVectorOption   VectorOption by BooleanVectorOptionKey   17. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerVectorOptionKey) -> rosetta.utility.options.IntegerVectorOption   VectorOption by IntegerVectorOptionKey   18. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.IntegerVectorOptionKey) -> rosetta.utility.options.IntegerVectorOption   VectorOption by IntegerVectorOptionKey   19. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealVectorOptionKey) -> rosetta.utility.options.RealVectorOption   VectorOption by RealVectorOptionKey   20. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.RealVectorOptionKey) -> rosetta.utility.options.RealVectorOption   VectorOption by RealVectorOptionKey   21. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringVectorOptionKey) -> rosetta.utility.options.StringVectorOption   VectorOption by StringVectorOptionKey   22. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.StringVectorOptionKey) -> rosetta.utility.options.StringVectorOption   VectorOption by StringVectorOptionKey   23. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileVectorOptionKey) -> rosetta.utility.options.FileVectorOption   VectorOption by FileVectorOptionKey   24. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.FileVectorOptionKey) -> rosetta.utility.options.FileVectorOption   VectorOption by FileVectorOptionKey   25. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathVectorOptionKey) -> rosetta.utility.options.PathVectorOption   VectorOption by PathVectorOptionKey   26. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.PathVectorOptionKey) -> rosetta.utility.options.PathVectorOption   VectorOption by PathVectorOptionKey   27. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyVectorOptionKey) -> rosetta.utility.options.VectorOption   VectorOption by AnyVectorOptionKey   28. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.AnyVectorOptionKey) -> rosetta.utility.options.VectorOption   VectorOption by AnyVectorOptionKey   29. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.OptionKey) -> rosetta.utility.options.Option   Option by OptionKey   30. option(self : rosetta.utility.options.OptionCollection, key : rosetta.utility.options.OptionKey) -> rosetta.utility.options.Option   Option by OptionKey prefix(...) from builtins.PyCapsule prefix(*args, **kwargs) Overloaded function.   1. prefix(s : str) -> str   Prefix of an option id with a specified number of parts   2. prefix(s : str, n : int) -> str   Prefix of an option id with a specified number of parts set_show_accessed_options_flag(...) from builtins.PyCapsule set_show_accessed_options_flag(v : bool) -> NoneType   modify 'show_accessed_options' flag; set_show_unused_options_flag(...) from builtins.PyCapsule set_show_unused_options_flag(v : bool) -> NoneType   modify 'show_unused_options' flag; space_prefixed(...) from builtins.PyCapsule space_prefixed(*args, **kwargs) Overloaded function.   1. space_prefixed(s : str) -> str   Space-prefixed string except blank if string is empty   2. space_prefixed(s : str, n : int) -> str   Space-prefixed string except blank if string is empty suffix(...) from builtins.PyCapsule suffix(*args, **kwargs) Overloaded function.   1. suffix(s : str) -> str   Suffix of an option id with a specified number of parts   2. suffix(s : str, n : int) -> str   Suffix of an option id with a specified number of parts tab_prefixed(...) from builtins.PyCapsule tab_prefixed(*args, **kwargs) Overloaded function.   1. tab_prefixed(s : str) -> str   Tab-prefixed string except blank if string is empty   2. tab_prefixed(s : str, n : int) -> str   Tab-prefixed string except blank if string is empty trim(...) from builtins.PyCapsule trim(*args, **kwargs) Overloaded function.   1. trim(s : str) -> str   Trim a specified number of parts from the suffix of an option id   2. trim(s : str, n : int) -> str   Trim a specified number of parts from the suffix of an option id trimmed(...) from builtins.PyCapsule trimmed(*args, **kwargs) Overloaded function.   1. trimmed(s : str) -> str   Prefix of an option id with a specified number of suffix parts removed   2. trimmed(s : str, n : int) -> str   Prefix of an option id with a specified number of suffix parts removed wrapped(...) from builtins.PyCapsule wrapped(*args, **kwargs) Overloaded function.   1. wrapped(s : str) -> str   String wrapped and indented   2. wrapped(s : str, indent : int) -> str   String wrapped and indented   3. wrapped(s : str, indent : int, width : int) -> str   String wrapped and indented   4. wrapped(s : str, indent : int, width : int, header_for_extra_lines : str) -> str   String wrapped and indented   class OptionKey(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t)     Abstract automatic hidden index key for options     Method resolution order: OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.OptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.OptionKey   Key assignment   2. assign(self : rosetta.utility.options.OptionKey,  : rosetta.utility.options.OptionKey) -> rosetta.utility.options.OptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.OptionKey) -> rosetta.utility.options.OptionKey   Clone this scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.OptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.OptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class OptionTypes(builtins.object)     Option types enumeration     Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(rosetta.utility.options.OptionTypes, rosetta.utility.options.OptionTypes) -> bool __hash__(...) from builtins.PyCapsule __hash__(rosetta.utility.options.OptionTypes) -> int __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.utility.options.OptionTypes, int) -> NoneType   2. __init__(rosetta.utility.options.OptionTypes, int) -> NoneType __int__(...) from builtins.PyCapsule __int__(rosetta.utility.options.OptionTypes) -> int __ne__(...) from builtins.PyCapsule __ne__(rosetta.utility.options.OptionTypes, rosetta.utility.options.OptionTypes) -> bool __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __repr__(...) from builtins.PyCapsule __repr__(rosetta.utility.options.OptionTypes) -> str Data and other attributes defined here: ANY_OPTION = OptionTypes.ANY_OPTION ANY_VECTOR_OPTION = OptionTypes.ANY_VECTOR_OPTION BOOLEAN_OPTION = OptionTypes.BOOLEAN_OPTION BOOLEAN_VECTOR_OPTION = OptionTypes.BOOLEAN_VECTOR_OPTION FILE_OPTION = OptionTypes.FILE_OPTION FILE_VECTOR_OPTION = OptionTypes.FILE_VECTOR_OPTION INTEGER_OPTION = OptionTypes.INTEGER_OPTION INTEGER_VECTOR_OPTION = OptionTypes.INTEGER_VECTOR_OPTION PATH_OPTION = OptionTypes.PATH_OPTION PATH_VECTOR_OPTION = OptionTypes.PATH_VECTOR_OPTION REAL_OPTION = OptionTypes.REAL_OPTION REAL_VECTOR_OPTION = OptionTypes.REAL_VECTOR_OPTION RESIDUE_CHAIN_VECTOR_OPTION = OptionTypes.RESIDUE_CHAIN_VECTOR_OPTION STRING_OPTION = OptionTypes.STRING_OPTION STRING_VECTOR_OPTION = OptionTypes.STRING_VECTOR_OPTION UNKNOWN_OPTION = OptionTypes.UNKNOWN_OPTION   class PathOption(ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t)     Program path option class     Method resolution order: PathOption ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t ScalarOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(self : rosetta.utility.options.PathOption, value_a : str) -> rosetta.utility.options.PathOption   Value assignment __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, key_a : rosetta.utility.options.PathOptionKey, description_a : str) -> NoneType   3. __init__(handle, rosetta.utility.options.PathOption) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.utility.options.PathOption,  : rosetta.utility.options.PathOption) -> rosetta.utility.options.PathOption clone(...) from builtins.PyCapsule clone(rosetta.utility.options.PathOption) -> rosetta.utility.options.PathOption   Clone this def(...) from builtins.PyCapsule def(self : rosetta.utility.options.PathOption, value_a : str) -> rosetta.utility.options.PathOption   Default value assignment default_value(...) from builtins.PyCapsule default_value(self : rosetta.utility.options.PathOption, value_a : str) -> rosetta.utility.options.PathOption   Default value assignment is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.PathOption, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.PathOption,  : str) -> bool   Is a string readable as this option's value type? type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.PathOption) -> str   Option type code string representation value(...) from builtins.PyCapsule value(self : rosetta.utility.options.PathOption, value_a : str) -> rosetta.utility.options.PathOption   Value assignment Methods inherited from ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t: activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. activate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_str : str) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> rosetta.utility.options.ScalarOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. clear(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clear code(...) from builtins.PyCapsule code(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. deactivate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Deactivate default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, option : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t description(...) from builtins.PyCapsule description(*args, **kwargs) Overloaded function.   1. description(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str   2. description(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, sd : str) -> NoneType equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.options.PathOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. legal(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> NoneType   2. legal_check(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str legal_value(...) from builtins.PyCapsule legal_value(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> bool lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. lower(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.Bound_utility_file_PathName_t n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> int n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a ScalarOption & return type. short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str   2. short_description(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, s : str) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t size(...) from builtins.PyCapsule size(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. to_default(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. upper(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.Bound_utility_file_PathName_t user(...) from builtins.PyCapsule user(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool user_or(...) from builtins.PyCapsule user_or(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.file.PathName value_or(...) from builtins.PyCapsule value_or(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.file.PathName value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType   class PathOptionKey(ScalarOptionKey)     Automatic hidden index key for path options     Method resolution order: PathOptionKey ScalarOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.utility.options.PathOptionKey, str) -> NoneType   doc   3. __init__(handle, rosetta.utility.options.PathOptionKey, str, str) -> NoneType   doc   4. __init__(self : handle, key : rosetta.utility.options.PathOptionKey, id_a : str, identifier_a : str, code_a : str) -> NoneType   5. __init__(self : handle, key : rosetta.utility.keys.Key) -> NoneType   6. __init__(handle, rosetta.utility.keys.Key, str) -> NoneType   doc   7. __init__(handle, rosetta.utility.keys.Key, str, str) -> NoneType   doc   8. __init__(self : handle, key : rosetta.utility.keys.Key, id_a : str, identifier_a : str, code_a : str) -> NoneType   9. __init__(handle, str) -> NoneType   doc   10. __init__(handle, str, str) -> NoneType   doc   11. __init__(self : handle, id_a : str, identifier_a : str, code_a : str) -> NoneType   12. __init__(handle, rosetta.utility.options.PathOptionKey) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.PathOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.PathOptionKey   Key assignment   2. assign(self : rosetta.utility.options.PathOptionKey,  : rosetta.utility.options.PathOptionKey) -> rosetta.utility.options.PathOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.PathOptionKey) -> rosetta.utility.options.PathOptionKey   Clone this Methods inherited from ScalarOptionKey: scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.ScalarOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.ScalarOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class PathVectorOption(VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t)     Program path vector option class     Method resolution order: PathVectorOption VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t VectorOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(self : rosetta.utility.options.PathVectorOption, value_a : str) -> rosetta.utility.options.PathVectorOption   Value assignment __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, key_a : rosetta.utility.options.PathVectorOptionKey, description_a : str) -> NoneType   3. __init__(handle, rosetta.utility.options.PathVectorOption) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.utility.options.PathVectorOption,  : rosetta.utility.options.PathVectorOption) -> rosetta.utility.options.PathVectorOption clone(...) from builtins.PyCapsule clone(rosetta.utility.options.PathVectorOption) -> rosetta.utility.options.PathVectorOption   Clone this def(...) from builtins.PyCapsule def(self : rosetta.utility.options.PathVectorOption, value_a : str) -> rosetta.utility.options.PathVectorOption   Default value assignment default_value(...) from builtins.PyCapsule default_value(self : rosetta.utility.options.PathVectorOption, value_a : str) -> rosetta.utility.options.PathVectorOption   Default value assignment is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.PathVectorOption, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.PathVectorOption,  : str) -> bool   Is a string readable as this option's value type? type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.PathVectorOption) -> str   Option type code string representation value(...) from builtins.PyCapsule value(self : rosetta.utility.options.PathVectorOption, value_a : str) -> rosetta.utility.options.PathVectorOption   Value assignment Methods inherited from VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t: __getitem__(...) from builtins.PyCapsule __getitem__(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, i : int) -> rosetta.utility.file.PathName activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. activate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_str : str) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> rosetta.utility.options.VectorOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. clear(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clear code(...) from builtins.PyCapsule code(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. deactivate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Deactivate default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, option : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t description(...) from builtins.PyCapsule description(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str fixed_size(...) from builtins.PyCapsule fixed_size(*args, **kwargs) Overloaded function.   1. fixed_size(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool   2. fixed_size(rosetta.utility.options.VectorOption) -> bool   Fixed number of values required? has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool has_value(...) from builtins.PyCapsule has_value(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value : rosetta.utility.file.PathName) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.options.PathVectorOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. legal(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> NoneType   2. legal_check(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool legal_default_size(...) from builtins.PyCapsule legal_default_size(*args, **kwargs) Overloaded function.   1. legal_default_size(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool   2. legal_default_size(rosetta.utility.options.VectorOption) -> bool   Legal default value size? legal_default_value(...) from builtins.PyCapsule legal_default_value(*args, **kwargs) Overloaded function.   1. legal_default_value(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool   2. legal_default_value(rosetta.utility.options.VectorOption) -> bool   Legal or inactive default value? legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool legal_size(...) from builtins.PyCapsule legal_size(*args, **kwargs) Overloaded function.   1. legal_size(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool   2. legal_size(rosetta.utility.options.VectorOption) -> bool   Legal value size? legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str legal_value(...) from builtins.PyCapsule legal_value(*args, **kwargs) Overloaded function.   1. legal_value(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool   2. legal_value(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> bool   3. legal_value(rosetta.utility.options.VectorOption) -> bool   Legal value? lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. lower(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.Bound_utility_file_PathName_t n(...) from builtins.PyCapsule n(*args, **kwargs) Overloaded function.   1. n(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. n(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> int   3. n(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Fixed number of values required assignment   4. n(rosetta.utility.options.VectorOption) -> int   Fixed number of values required (zero if none) n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> int n_lower(...) from builtins.PyCapsule n_lower(*args, **kwargs) Overloaded function.   1. n_lower(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. n_lower(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> int   3. n_lower(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Lower number of values allowed assignment   4. n_lower(rosetta.utility.options.VectorOption) -> int   Lower number of values allowed (zero if none) n_upper(...) from builtins.PyCapsule n_upper(*args, **kwargs) Overloaded function.   1. n_upper(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. n_upper(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> int   3. n_upper(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Upper number of values allowed assignment   4. n_upper(rosetta.utility.options.VectorOption) -> int   Upper number of values allowed (zero if none) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str push_back(...) from builtins.PyCapsule push_back(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a VectorOption & return type. This will separate arguments into  blocks grouped by quotes, and then separate the non-quote-delimited  arguments by whitespace short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str   2. short_description(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, s : str) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t size(...) from builtins.PyCapsule size(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. to_default(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. upper(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.Bound_utility_file_PathName_t user(...) from builtins.PyCapsule user(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool user_or(...) from builtins.PyCapsule user_or(*args, **kwargs) Overloaded function.   1. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.vector1_utility_file_PathName) -> rosetta.utility.vector1_utility_file_PathName   2. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, i : int, value_a : rosetta.utility.file.PathName) -> rosetta.utility.file.PathName value_or(...) from builtins.PyCapsule value_or(*args, **kwargs) Overloaded function.   1. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.vector1_utility_file_PathName) -> rosetta.utility.vector1_utility_file_PathName   2. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, i : int, value_a : rosetta.utility.file.PathName) -> rosetta.utility.file.PathName value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType   class PathVectorOptionKey(VectorOptionKey)     Automatic hidden index key for path options     Method resolution order: PathVectorOptionKey VectorOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.utility.options.PathVectorOptionKey, str) -> NoneType   doc   3. __init__(handle, rosetta.utility.options.PathVectorOptionKey, str, str) -> NoneType   doc   4. __init__(self : handle, key : rosetta.utility.options.PathVectorOptionKey, id_a : str, identifier_a : str, code_a : str) -> NoneType   5. __init__(self : handle, key : rosetta.utility.keys.Key) -> NoneType   6. __init__(handle, rosetta.utility.keys.Key, str) -> NoneType   doc   7. __init__(handle, rosetta.utility.keys.Key, str, str) -> NoneType   doc   8. __init__(self : handle, key : rosetta.utility.keys.Key, id_a : str, identifier_a : str, code_a : str) -> NoneType   9. __init__(handle, str) -> NoneType   doc   10. __init__(handle, str, str) -> NoneType   doc   11. __init__(self : handle, id_a : str, identifier_a : str, code_a : str) -> NoneType   12. __init__(handle, rosetta.utility.options.PathVectorOptionKey) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.PathVectorOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.PathVectorOptionKey   Key assignment   2. assign(self : rosetta.utility.options.PathVectorOptionKey,  : rosetta.utility.options.PathVectorOptionKey) -> rosetta.utility.options.PathVectorOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.PathVectorOptionKey) -> rosetta.utility.options.PathVectorOptionKey   Clone this Methods inherited from VectorOptionKey: scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.VectorOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.VectorOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class RealOption(ScalarOption_T__utility_options_RealOptionKey_double_t)     Program real option class     Method resolution order: RealOption ScalarOption_T__utility_options_RealOptionKey_double_t ScalarOption Option builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, key_a : rosetta.utility.options.RealOptionKey, description_a : str) -> NoneType   3. __init__(handle, rosetta.utility.options.RealOption) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.utility.options.RealOption,  : rosetta.utility.options.RealOption) -> rosetta.utility.options.RealOption clone(...) from builtins.PyCapsule clone(rosetta.utility.options.RealOption) -> rosetta.utility.options.RealOption   Clone this is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.RealOption, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.RealOption, value_str : str) -> bool   Is a string readable as this option's value type? type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.RealOption) -> str   Option type code string representation Methods inherited from ScalarOption_T__utility_options_RealOptionKey_double_t: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. __call__(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> float activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. activate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_str : str) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> rosetta.utility.options.ScalarOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. clear(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clear code(...) from builtins.PyCapsule code(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. deactivate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Deactivate def(...) from builtins.PyCapsule def(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, option : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. default_value(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> float description(...) from builtins.PyCapsule description(*args, **kwargs) Overloaded function.   1. description(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str   2. description(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, sd : str) -> NoneType equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.options.RealOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. legal(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> NoneType   2. legal_check(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str legal_value(...) from builtins.PyCapsule legal_value(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> bool lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. lower(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.Bound_double_t n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> int n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a ScalarOption & return type. short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str   2. short_description(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, s : str) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t size(...) from builtins.PyCapsule size(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. to_default(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. upper(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.Bound_double_t user(...) from builtins.PyCapsule user(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool user_or(...) from builtins.PyCapsule user_or(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> float value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. value(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> float value_or(...) from builtins.PyCapsule value_or(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> float value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType   class RealOptionKey(ScalarOptionKey)     Automatic hidden index key for real options     Method resolution order: RealOptionKey ScalarOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.utility.options.RealOptionKey, str) -> NoneType   doc   3. __init__(handle, rosetta.utility.options.RealOptionKey, str, str) -> NoneType   doc   4. __init__(self : handle, key : rosetta.utility.options.RealOptionKey, id_a : str, identifier_a : str, code_a : str) -> NoneType   5. __init__(self : handle, key : rosetta.utility.keys.Key) -> NoneType   6. __init__(handle, rosetta.utility.keys.Key, str) -> NoneType   doc   7. __init__(handle, rosetta.utility.keys.Key, str, str) -> NoneType   doc   8. __init__(self : handle, key : rosetta.utility.keys.Key, id_a : str, identifier_a : str, code_a : str) -> NoneType   9. __init__(handle, str) -> NoneType   doc   10. __init__(handle, str, str) -> NoneType   doc   11. __init__(self : handle, id_a : str, identifier_a : str, code_a : str) -> NoneType   12. __init__(handle, rosetta.utility.options.RealOptionKey) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.RealOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.RealOptionKey   Key assignment   2. assign(self : rosetta.utility.options.RealOptionKey,  : rosetta.utility.options.RealOptionKey) -> rosetta.utility.options.RealOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.RealOptionKey) -> rosetta.utility.options.RealOptionKey   Clone this Methods inherited from ScalarOptionKey: scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.ScalarOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.ScalarOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class RealVectorOption(VectorOption_T__utility_options_RealVectorOptionKey_double_t)     Program real vector option class     Method resolution order: RealVectorOption VectorOption_T__utility_options_RealVectorOptionKey_double_t VectorOption Option builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, key_a : rosetta.utility.options.RealVectorOptionKey, description_a : str) -> NoneType   3. __init__(handle, rosetta.utility.options.RealVectorOption) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.utility.options.RealVectorOption,  : rosetta.utility.options.RealVectorOption) -> rosetta.utility.options.RealVectorOption clone(...) from builtins.PyCapsule clone(rosetta.utility.options.RealVectorOption) -> rosetta.utility.options.RealVectorOption   Clone this is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.RealVectorOption, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.RealVectorOption, value_str : str) -> bool   Is a string readable as this option's value type? type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.RealVectorOption) -> str   Option type code string representation Methods inherited from VectorOption_T__utility_options_RealVectorOptionKey_double_t: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : rosetta.utility.vector1_double) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   3. __call__(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.vector1_double   4. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, i : int) -> float __getitem__(...) from builtins.PyCapsule __getitem__(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, i : int) -> float activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. activate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_str : str) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> rosetta.utility.options.VectorOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. clear(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clear code(...) from builtins.PyCapsule code(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. deactivate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Deactivate def(...) from builtins.PyCapsule def(*args, **kwargs) Overloaded function.   1. def(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. def(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   3. def(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : rosetta.utility.vector1_double) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, option : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : rosetta.utility.vector1_double) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   3. default_value(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.vector1_double   4. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, i : int) -> float description(...) from builtins.PyCapsule description(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str fixed_size(...) from builtins.PyCapsule fixed_size(*args, **kwargs) Overloaded function.   1. fixed_size(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool   2. fixed_size(rosetta.utility.options.VectorOption) -> bool   Fixed number of values required? has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool has_value(...) from builtins.PyCapsule has_value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value : float) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.options.RealVectorOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. legal(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> NoneType   2. legal_check(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool legal_default_size(...) from builtins.PyCapsule legal_default_size(*args, **kwargs) Overloaded function.   1. legal_default_size(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool   2. legal_default_size(rosetta.utility.options.VectorOption) -> bool   Legal default value size? legal_default_value(...) from builtins.PyCapsule legal_default_value(*args, **kwargs) Overloaded function.   1. legal_default_value(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool   2. legal_default_value(rosetta.utility.options.VectorOption) -> bool   Legal or inactive default value? legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool legal_size(...) from builtins.PyCapsule legal_size(*args, **kwargs) Overloaded function.   1. legal_size(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool   2. legal_size(rosetta.utility.options.VectorOption) -> bool   Legal value size? legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str legal_value(...) from builtins.PyCapsule legal_value(*args, **kwargs) Overloaded function.   1. legal_value(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool   2. legal_value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> bool   3. legal_value(rosetta.utility.options.VectorOption) -> bool   Legal value? lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. lower(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.Bound_double_t n(...) from builtins.PyCapsule n(*args, **kwargs) Overloaded function.   1. n(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. n(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> int   3. n(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Fixed number of values required assignment   4. n(rosetta.utility.options.VectorOption) -> int   Fixed number of values required (zero if none) n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> int n_lower(...) from builtins.PyCapsule n_lower(*args, **kwargs) Overloaded function.   1. n_lower(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. n_lower(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> int   3. n_lower(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Lower number of values allowed assignment   4. n_lower(rosetta.utility.options.VectorOption) -> int   Lower number of values allowed (zero if none) n_upper(...) from builtins.PyCapsule n_upper(*args, **kwargs) Overloaded function.   1. n_upper(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. n_upper(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> int   3. n_upper(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Upper number of values allowed assignment   4. n_upper(rosetta.utility.options.VectorOption) -> int   Upper number of values allowed (zero if none) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str push_back(...) from builtins.PyCapsule push_back(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a VectorOption & return type. This will separate arguments into  blocks grouped by quotes, and then separate the non-quote-delimited  arguments by whitespace short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str   2. short_description(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, s : str) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t size(...) from builtins.PyCapsule size(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. to_default(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. upper(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.Bound_double_t user(...) from builtins.PyCapsule user(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool user_or(...) from builtins.PyCapsule user_or(*args, **kwargs) Overloaded function.   1. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : rosetta.utility.vector1_double) -> rosetta.utility.vector1_double   2. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, i : int, value_a : float) -> float value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : rosetta.utility.vector1_double) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   3. value(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.vector1_double   4. value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, i : int) -> float value_or(...) from builtins.PyCapsule value_or(*args, **kwargs) Overloaded function.   1. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : rosetta.utility.vector1_double) -> rosetta.utility.vector1_double   2. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, i : int, value_a : float) -> float value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType   class RealVectorOptionKey(VectorOptionKey)     Automatic hidden index key for real options     Method resolution order: RealVectorOptionKey VectorOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.utility.options.RealVectorOptionKey, str) -> NoneType   doc   3. __init__(handle, rosetta.utility.options.RealVectorOptionKey, str, str) -> NoneType   doc   4. __init__(self : handle, key : rosetta.utility.options.RealVectorOptionKey, id_a : str, identifier_a : str, code_a : str) -> NoneType   5. __init__(self : handle, key : rosetta.utility.keys.Key) -> NoneType   6. __init__(handle, rosetta.utility.keys.Key, str) -> NoneType   doc   7. __init__(handle, rosetta.utility.keys.Key, str, str) -> NoneType   doc   8. __init__(self : handle, key : rosetta.utility.keys.Key, id_a : str, identifier_a : str, code_a : str) -> NoneType   9. __init__(handle, str) -> NoneType   doc   10. __init__(handle, str, str) -> NoneType   doc   11. __init__(self : handle, id_a : str, identifier_a : str, code_a : str) -> NoneType   12. __init__(handle, rosetta.utility.options.RealVectorOptionKey) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.RealVectorOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.RealVectorOptionKey   Key assignment   2. assign(self : rosetta.utility.options.RealVectorOptionKey,  : rosetta.utility.options.RealVectorOptionKey) -> rosetta.utility.options.RealVectorOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.RealVectorOptionKey) -> rosetta.utility.options.RealVectorOptionKey   Clone this Methods inherited from VectorOptionKey: scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.VectorOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.VectorOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class ResidueChainVectorOption(VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t)     Program integer vector option class     Method resolution order: ResidueChainVectorOption VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t VectorOption Option builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, key_a : rosetta.utility.options.ResidueChainVectorOptionKey, description_a : str) -> NoneType   3. __init__(handle, rosetta.utility.options.ResidueChainVectorOption) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.utility.options.ResidueChainVectorOption,  : rosetta.utility.options.ResidueChainVectorOption) -> rosetta.utility.options.ResidueChainVectorOption cl_value(...) from builtins.PyCapsule cl_value(self : rosetta.utility.options.ResidueChainVectorOption, value_str : str) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t clone(...) from builtins.PyCapsule clone(rosetta.utility.options.ResidueChainVectorOption) -> rosetta.utility.options.ResidueChainVectorOption   Clone this copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.ResidueChainVectorOption, other : rosetta.utility.options.Option) -> NoneType is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.ResidueChainVectorOption, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.ResidueChainVectorOption,  : str) -> bool   Is a string readable as this option's value type? resnum_and_chain(...) from builtins.PyCapsule resnum_and_chain(rosetta.utility.options.ResidueChainVectorOption) -> (rosetta.utility.vector1_int, rosetta.utility.vector1_char) type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.ResidueChainVectorOption) -> str   Option type code string representation Methods inherited from VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   3. __call__(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.vector1_int   4. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, i : int) -> int __getitem__(...) from builtins.PyCapsule __getitem__(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, i : int) -> int activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. activate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. clear(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clear code(...) from builtins.PyCapsule code(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. deactivate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Deactivate def(...) from builtins.PyCapsule def(*args, **kwargs) Overloaded function.   1. def(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. def(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   3. def(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, option : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   3. default_value(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.vector1_int   4. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, i : int) -> int description(...) from builtins.PyCapsule description(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str fixed_size(...) from builtins.PyCapsule fixed_size(*args, **kwargs) Overloaded function.   1. fixed_size(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool   2. fixed_size(rosetta.utility.options.VectorOption) -> bool   Fixed number of values required? has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool has_value(...) from builtins.PyCapsule has_value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value : int) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.options.ResidueChainVectorOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. legal(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> NoneType   2. legal_check(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool legal_default_size(...) from builtins.PyCapsule legal_default_size(*args, **kwargs) Overloaded function.   1. legal_default_size(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool   2. legal_default_size(rosetta.utility.options.VectorOption) -> bool   Legal default value size? legal_default_value(...) from builtins.PyCapsule legal_default_value(*args, **kwargs) Overloaded function.   1. legal_default_value(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool   2. legal_default_value(rosetta.utility.options.VectorOption) -> bool   Legal or inactive default value? legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool legal_size(...) from builtins.PyCapsule legal_size(*args, **kwargs) Overloaded function.   1. legal_size(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool   2. legal_size(rosetta.utility.options.VectorOption) -> bool   Legal value size? legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str legal_value(...) from builtins.PyCapsule legal_value(*args, **kwargs) Overloaded function.   1. legal_value(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool   2. legal_value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> bool   3. legal_value(rosetta.utility.options.VectorOption) -> bool   Legal value? lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. lower(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.Bound_int_t n(...) from builtins.PyCapsule n(*args, **kwargs) Overloaded function.   1. n(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. n(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> int   3. n(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Fixed number of values required assignment   4. n(rosetta.utility.options.VectorOption) -> int   Fixed number of values required (zero if none) n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> int n_lower(...) from builtins.PyCapsule n_lower(*args, **kwargs) Overloaded function.   1. n_lower(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. n_lower(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> int   3. n_lower(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Lower number of values allowed assignment   4. n_lower(rosetta.utility.options.VectorOption) -> int   Lower number of values allowed (zero if none) n_upper(...) from builtins.PyCapsule n_upper(*args, **kwargs) Overloaded function.   1. n_upper(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. n_upper(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> int   3. n_upper(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Upper number of values allowed assignment   4. n_upper(rosetta.utility.options.VectorOption) -> int   Upper number of values allowed (zero if none) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str push_back(...) from builtins.PyCapsule push_back(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a VectorOption & return type. This will separate arguments into  blocks grouped by quotes, and then separate the non-quote-delimited  arguments by whitespace short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str   2. short_description(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, s : str) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t size(...) from builtins.PyCapsule size(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. to_default(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. upper(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.Bound_int_t user(...) from builtins.PyCapsule user(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool user_or(...) from builtins.PyCapsule user_or(*args, **kwargs) Overloaded function.   1. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.vector1_int   2. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, i : int, value_a : int) -> int value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   3. value(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.vector1_int   4. value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, i : int) -> int value_or(...) from builtins.PyCapsule value_or(*args, **kwargs) Overloaded function.   1. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.vector1_int   2. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, i : int, value_a : int) -> int value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType   class ResidueChainVectorOptionKey(VectorOptionKey)     Automatic hidden index key for integer options     Method resolution order: ResidueChainVectorOptionKey VectorOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.utility.options.ResidueChainVectorOptionKey, str) -> NoneType   doc   3. __init__(handle, rosetta.utility.options.ResidueChainVectorOptionKey, str, str) -> NoneType   doc   4. __init__(self : handle, key : rosetta.utility.options.ResidueChainVectorOptionKey, id_a : str, identifier_a : str, code_a : str) -> NoneType   5. __init__(self : handle, key : rosetta.utility.keys.Key) -> NoneType   6. __init__(handle, rosetta.utility.keys.Key, str) -> NoneType   doc   7. __init__(handle, rosetta.utility.keys.Key, str, str) -> NoneType   doc   8. __init__(self : handle, key : rosetta.utility.keys.Key, id_a : str, identifier_a : str, code_a : str) -> NoneType   9. __init__(handle, str) -> NoneType   doc   10. __init__(handle, str, str) -> NoneType   doc   11. __init__(self : handle, id_a : str, identifier_a : str, code_a : str) -> NoneType   12. __init__(handle, rosetta.utility.options.ResidueChainVectorOptionKey) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.ResidueChainVectorOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.ResidueChainVectorOptionKey   Key assignment   2. assign(self : rosetta.utility.options.ResidueChainVectorOptionKey,  : rosetta.utility.options.ResidueChainVectorOptionKey) -> rosetta.utility.options.ResidueChainVectorOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.ResidueChainVectorOptionKey) -> rosetta.utility.options.ResidueChainVectorOptionKey   Clone this Methods inherited from VectorOptionKey: scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.VectorOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.VectorOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class ScalarOption(Option)     Program scalar-valued option interface class     Method resolution order: ScalarOption Option builtins.object Methods defined here: __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Activate cl_value(...) from builtins.PyCapsule cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> rosetta.utility.options.ScalarOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clear clone(...) from builtins.PyCapsule clone(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clone this deactivate(...) from builtins.PyCapsule deactivate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Deactivate set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a ScalarOption & return type. to_default(...) from builtins.PyCapsule to_default(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Set to default value, if any Methods inherited from Option: active(...) from builtins.PyCapsule active(rosetta.utility.options.Option) -> bool   Active?  That is, the option has some value, either the default one or specified on the command line. been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.Option) -> bool   Can another value be added and stay within any size constraints? check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType code(...) from builtins.PyCapsule code(rosetta.utility.options.Option) -> str   Code copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.Option, other : rosetta.utility.options.Option) -> NoneType   Copy operation -- requires that other match the type of this. default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.Option) -> bool   Default active? default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.Option) -> bool   Default inactive? default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.Option) -> int   Default size (number of default values) default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.Option) -> str   Default value string representation description(...) from builtins.PyCapsule description(rosetta.utility.options.Option) -> str   Description equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.Option) -> str   =Value string representation has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.Option) -> bool   Has a default? id(...) from builtins.PyCapsule id(rosetta.utility.options.Option) -> str   ID identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.Option) -> str   Identifier is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? key(...) from builtins.PyCapsule key(rosetta.utility.options.Option) -> rosetta.utility.options.OptionKey   Key legal(...) from builtins.PyCapsule legal(rosetta.utility.options.Option) -> bool   Legal value? legal_check(...) from builtins.PyCapsule legal_check(rosetta.utility.options.Option) -> NoneType   Legal value check legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.Option) -> bool   Legal or inactive default value? legal_default_check(...) from builtins.PyCapsule legal_default_check(rosetta.utility.options.Option) -> NoneType   Legal default value check legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.Option) -> bool   Legal default value check: Report and return error state legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.Option) -> bool   Legal value limits check: Report and return error state legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.Option) -> bool   Legal value check: Report and return error state legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.Option) -> bool   Legal size limits check: Report and return error state legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.Option) -> bool   Legal specifications check: Report and return error state legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.Option) -> str   Legal value string representation n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.Option) -> int   Number of default values (default size) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.Option) -> int   Number of values (size) name(...) from builtins.PyCapsule name(rosetta.utility.options.Option) -> str   Name raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.Option) -> str   Default value string representation raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.Option) -> str   Value string representation restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType short_description(...) from builtins.PyCapsule short_description(rosetta.utility.options.Option) -> str   short_Description size(...) from builtins.PyCapsule size(rosetta.utility.options.Option) -> int   Size (number of values) size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.Option) -> str   Size constraint string representation specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.Option) -> NoneType   Required specified option check specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.Option) -> bool   Required specified option check: Report and return error state type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation user(...) from builtins.PyCapsule user(rosetta.utility.options.Option) -> bool   User-specified?  That is, the option value was specified on the command line.  You should probably use active() instead in almost all cases! value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.Option) -> str   Value string representation   class ScalarOptionKey(OptionKey)     Abstract automatic hidden index key for scalar-valued options     Method resolution order: ScalarOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.ScalarOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.ScalarOptionKey   Key assignment   2. assign(self : rosetta.utility.options.ScalarOptionKey,  : rosetta.utility.options.ScalarOptionKey) -> rosetta.utility.options.ScalarOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.ScalarOptionKey) -> rosetta.utility.options.ScalarOptionKey   Clone this scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.ScalarOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.ScalarOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class ScalarOption_T__utility_options_BooleanOptionKey_bool_t(ScalarOption)       Method resolution order: ScalarOption_T__utility_options_BooleanOptionKey_bool_t ScalarOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. __call__(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. activate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_str : str) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> rosetta.utility.options.ScalarOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. clear(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clear clone(...) from builtins.PyCapsule clone(*args, **kwargs) Overloaded function.   1. clone(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. clone(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clone this code(...) from builtins.PyCapsule code(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. deactivate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Deactivate def(...) from builtins.PyCapsule def(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, option : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. default_value(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool description(...) from builtins.PyCapsule description(*args, **kwargs) Overloaded function.   1. description(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str   2. description(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, sd : str) -> NoneType equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.options.BooleanOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. legal(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> NoneType   2. legal_check(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str legal_value(...) from builtins.PyCapsule legal_value(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> bool lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. lower(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.Bound_bool_t n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> int n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a ScalarOption & return type. short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str   2. short_description(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, s : str) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t size(...) from builtins.PyCapsule size(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. to_default(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. upper(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> rosetta.utility.Bound_bool_t user(...) from builtins.PyCapsule user(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool user_or(...) from builtins.PyCapsule user_or(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> bool value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t   2. value(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> bool value_or(...) from builtins.PyCapsule value_or(self : rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t, value_a : bool) -> bool value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.ScalarOption_T__utility_options_BooleanOptionKey_bool_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation   class ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t(ScalarOption)       Method resolution order: ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t ScalarOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. __call__(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.file.FileName __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. activate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_str : str) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> rosetta.utility.options.ScalarOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. clear(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clear clone(...) from builtins.PyCapsule clone(*args, **kwargs) Overloaded function.   1. clone(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. clone(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clone this code(...) from builtins.PyCapsule code(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. deactivate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Deactivate def(...) from builtins.PyCapsule def(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, option : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. default_value(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.file.FileName description(...) from builtins.PyCapsule description(*args, **kwargs) Overloaded function.   1. description(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str   2. description(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, sd : str) -> NoneType equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.options.FileOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. legal(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> NoneType   2. legal_check(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str legal_value(...) from builtins.PyCapsule legal_value(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> bool lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. lower(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.Bound_utility_file_FileName_t n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> int n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a ScalarOption & return type. short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str   2. short_description(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, s : str) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t size(...) from builtins.PyCapsule size(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. to_default(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. upper(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.Bound_utility_file_FileName_t user(...) from builtins.PyCapsule user(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> bool user_or(...) from builtins.PyCapsule user_or(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.file.FileName value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t   2. value(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> rosetta.utility.file.FileName value_or(...) from builtins.PyCapsule value_or(self : rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.file.FileName value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.ScalarOption_T__utility_options_FileOptionKey_utility_file_FileName_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation   class ScalarOption_T__utility_options_IntegerOptionKey_int_t(ScalarOption)       Method resolution order: ScalarOption_T__utility_options_IntegerOptionKey_int_t ScalarOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. __call__(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> int __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. activate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_str : str) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> rosetta.utility.options.ScalarOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. clear(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clear clone(...) from builtins.PyCapsule clone(*args, **kwargs) Overloaded function.   1. clone(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. clone(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clone this code(...) from builtins.PyCapsule code(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. deactivate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Deactivate def(...) from builtins.PyCapsule def(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, option : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. default_value(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> int description(...) from builtins.PyCapsule description(*args, **kwargs) Overloaded function.   1. description(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str   2. description(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, sd : str) -> NoneType equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.options.IntegerOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. legal(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> NoneType   2. legal_check(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str legal_value(...) from builtins.PyCapsule legal_value(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> bool lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. lower(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.Bound_int_t n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> int n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a ScalarOption & return type. short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str   2. short_description(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, s : str) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t size(...) from builtins.PyCapsule size(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. to_default(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. upper(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> rosetta.utility.Bound_int_t user(...) from builtins.PyCapsule user(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> bool user_or(...) from builtins.PyCapsule user_or(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> int value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t   2. value(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> int value_or(...) from builtins.PyCapsule value_or(self : rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t, value_a : int) -> int value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.ScalarOption_T__utility_options_IntegerOptionKey_int_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation   class ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t(ScalarOption)       Method resolution order: ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t ScalarOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. __call__(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.file.PathName __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. activate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_str : str) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> rosetta.utility.options.ScalarOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. clear(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clear clone(...) from builtins.PyCapsule clone(*args, **kwargs) Overloaded function.   1. clone(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. clone(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clone this code(...) from builtins.PyCapsule code(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. deactivate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Deactivate def(...) from builtins.PyCapsule def(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, option : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. default_value(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.file.PathName description(...) from builtins.PyCapsule description(*args, **kwargs) Overloaded function.   1. description(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str   2. description(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, sd : str) -> NoneType equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.options.PathOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. legal(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> NoneType   2. legal_check(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str legal_value(...) from builtins.PyCapsule legal_value(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> bool lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. lower(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.Bound_utility_file_PathName_t n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> int n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a ScalarOption & return type. short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str   2. short_description(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, s : str) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t size(...) from builtins.PyCapsule size(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. to_default(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. upper(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.Bound_utility_file_PathName_t user(...) from builtins.PyCapsule user(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> bool user_or(...) from builtins.PyCapsule user_or(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.file.PathName value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t   2. value(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> rosetta.utility.file.PathName value_or(...) from builtins.PyCapsule value_or(self : rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.file.PathName value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.ScalarOption_T__utility_options_PathOptionKey_utility_file_PathName_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation   class ScalarOption_T__utility_options_RealOptionKey_double_t(ScalarOption)       Method resolution order: ScalarOption_T__utility_options_RealOptionKey_double_t ScalarOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. __call__(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> float __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. activate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_str : str) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> rosetta.utility.options.ScalarOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. clear(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clear clone(...) from builtins.PyCapsule clone(*args, **kwargs) Overloaded function.   1. clone(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. clone(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clone this code(...) from builtins.PyCapsule code(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. deactivate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Deactivate def(...) from builtins.PyCapsule def(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, option : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. default_value(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> float description(...) from builtins.PyCapsule description(*args, **kwargs) Overloaded function.   1. description(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str   2. description(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, sd : str) -> NoneType equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.options.RealOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. legal(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> NoneType   2. legal_check(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str legal_value(...) from builtins.PyCapsule legal_value(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> bool lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. lower(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.Bound_double_t n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> int n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a ScalarOption & return type. short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str   2. short_description(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, s : str) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t size(...) from builtins.PyCapsule size(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. to_default(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. upper(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> rosetta.utility.Bound_double_t user(...) from builtins.PyCapsule user(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> bool user_or(...) from builtins.PyCapsule user_or(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> float value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t   2. value(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> float value_or(...) from builtins.PyCapsule value_or(self : rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t, value_a : float) -> float value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.ScalarOption_T__utility_options_RealOptionKey_double_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation   class ScalarOption_T__utility_options_StringOptionKey_std_string_t(ScalarOption)       Method resolution order: ScalarOption_T__utility_options_StringOptionKey_std_string_t ScalarOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. __call__(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. activate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_str : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> rosetta.utility.options.ScalarOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. clear(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clear clone(...) from builtins.PyCapsule clone(*args, **kwargs) Overloaded function.   1. clone(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. clone(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clone this code(...) from builtins.PyCapsule code(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. deactivate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Deactivate def(...) from builtins.PyCapsule def(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, option : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. default_value(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str description(...) from builtins.PyCapsule description(*args, **kwargs) Overloaded function.   1. description(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str   2. description(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, sd : str) -> NoneType equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.options.StringOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. legal(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> NoneType   2. legal_check(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str legal_value(...) from builtins.PyCapsule legal_value(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> bool lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. lower(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.Bound_std_string_t n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> int n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a ScalarOption & return type. short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str   2. short_description(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, s : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t size(...) from builtins.PyCapsule size(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. to_default(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. upper(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.Bound_std_string_t user(...) from builtins.PyCapsule user(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool user_or(...) from builtins.PyCapsule user_or(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> str value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. value(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str value_or(...) from builtins.PyCapsule value_or(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> str value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation   class StringOption(ScalarOption_T__utility_options_StringOptionKey_std_string_t)     Program string option class     Method resolution order: StringOption ScalarOption_T__utility_options_StringOptionKey_std_string_t ScalarOption Option builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, key_a : rosetta.utility.options.StringOptionKey, description_a : str) -> NoneType   3. __init__(handle, rosetta.utility.options.StringOption) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.utility.options.StringOption,  : rosetta.utility.options.StringOption) -> rosetta.utility.options.StringOption clone(...) from builtins.PyCapsule clone(rosetta.utility.options.StringOption) -> rosetta.utility.options.StringOption   Clone this is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.StringOption, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.StringOption,  : str) -> bool   Is a string readable as this option's value type? type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.StringOption) -> str   Option type code string representation Methods inherited from ScalarOption_T__utility_options_StringOptionKey_std_string_t: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. __call__(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. activate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_str : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> rosetta.utility.options.ScalarOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. clear(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Clear code(...) from builtins.PyCapsule code(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. deactivate(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Deactivate def(...) from builtins.PyCapsule def(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, option : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. default_value(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str description(...) from builtins.PyCapsule description(*args, **kwargs) Overloaded function.   1. description(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str   2. description(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, sd : str) -> NoneType equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.options.StringOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. legal(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> NoneType   2. legal_check(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str legal_value(...) from builtins.PyCapsule legal_value(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> bool lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. lower(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.Bound_std_string_t n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> int n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.ScalarOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a ScalarOption & return type. short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str   2. short_description(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, s : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t size(...) from builtins.PyCapsule size(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. to_default(rosetta.utility.options.ScalarOption) -> rosetta.utility.options.ScalarOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. upper(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> rosetta.utility.Bound_std_string_t user(...) from builtins.PyCapsule user(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> bool user_or(...) from builtins.PyCapsule user_or(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> str value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t   2. value(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str value_or(...) from builtins.PyCapsule value_or(self : rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t, value_a : str) -> str value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.ScalarOption_T__utility_options_StringOptionKey_std_string_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType   class StringOptionKey(ScalarOptionKey)     Automatic hidden index key for string options     Method resolution order: StringOptionKey ScalarOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.utility.options.StringOptionKey, str) -> NoneType   doc   3. __init__(handle, rosetta.utility.options.StringOptionKey, str, str) -> NoneType   doc   4. __init__(self : handle, key : rosetta.utility.options.StringOptionKey, id_a : str, identifier_a : str, code_a : str) -> NoneType   5. __init__(self : handle, key : rosetta.utility.keys.Key) -> NoneType   6. __init__(handle, rosetta.utility.keys.Key, str) -> NoneType   doc   7. __init__(handle, rosetta.utility.keys.Key, str, str) -> NoneType   doc   8. __init__(self : handle, key : rosetta.utility.keys.Key, id_a : str, identifier_a : str, code_a : str) -> NoneType   9. __init__(handle, str) -> NoneType   doc   10. __init__(handle, str, str) -> NoneType   doc   11. __init__(self : handle, id_a : str, identifier_a : str, code_a : str) -> NoneType   12. __init__(handle, rosetta.utility.options.StringOptionKey) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.StringOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.StringOptionKey   Key assignment   2. assign(self : rosetta.utility.options.StringOptionKey,  : rosetta.utility.options.StringOptionKey) -> rosetta.utility.options.StringOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.StringOptionKey) -> rosetta.utility.options.StringOptionKey   Clone this Methods inherited from ScalarOptionKey: scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.ScalarOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.ScalarOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class StringVectorOption(VectorOption_T__utility_options_StringVectorOptionKey_std_string_t)     Program string option class     Method resolution order: StringVectorOption VectorOption_T__utility_options_StringVectorOptionKey_std_string_t VectorOption Option builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, key_a : rosetta.utility.options.StringVectorOptionKey, description_a : str) -> NoneType   3. __init__(handle, rosetta.utility.options.StringVectorOption) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.utility.options.StringVectorOption,  : rosetta.utility.options.StringVectorOption) -> rosetta.utility.options.StringVectorOption clone(...) from builtins.PyCapsule clone(rosetta.utility.options.StringVectorOption) -> rosetta.utility.options.StringVectorOption   Clone this is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.StringVectorOption, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.StringVectorOption,  : str) -> bool   Is a string readable as this option's value type? type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.StringVectorOption) -> str   Option type code string representation Methods inherited from VectorOption_T__utility_options_StringVectorOptionKey_std_string_t: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : rosetta.utility.vector1_std_string) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   3. __call__(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.vector1_std_string   4. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, i : int) -> str __getitem__(...) from builtins.PyCapsule __getitem__(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, i : int) -> str activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. activate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_str : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> rosetta.utility.options.VectorOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. clear(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clear code(...) from builtins.PyCapsule code(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. deactivate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Deactivate def(...) from builtins.PyCapsule def(*args, **kwargs) Overloaded function.   1. def(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. def(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   3. def(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : rosetta.utility.vector1_std_string) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, option : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : rosetta.utility.vector1_std_string) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   3. default_value(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.vector1_std_string   4. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, i : int) -> str description(...) from builtins.PyCapsule description(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str fixed_size(...) from builtins.PyCapsule fixed_size(*args, **kwargs) Overloaded function.   1. fixed_size(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool   2. fixed_size(rosetta.utility.options.VectorOption) -> bool   Fixed number of values required? has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool has_value(...) from builtins.PyCapsule has_value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value : str) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.options.StringVectorOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. legal(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> NoneType   2. legal_check(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool legal_default_size(...) from builtins.PyCapsule legal_default_size(*args, **kwargs) Overloaded function.   1. legal_default_size(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool   2. legal_default_size(rosetta.utility.options.VectorOption) -> bool   Legal default value size? legal_default_value(...) from builtins.PyCapsule legal_default_value(*args, **kwargs) Overloaded function.   1. legal_default_value(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool   2. legal_default_value(rosetta.utility.options.VectorOption) -> bool   Legal or inactive default value? legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool legal_size(...) from builtins.PyCapsule legal_size(*args, **kwargs) Overloaded function.   1. legal_size(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool   2. legal_size(rosetta.utility.options.VectorOption) -> bool   Legal value size? legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str legal_value(...) from builtins.PyCapsule legal_value(*args, **kwargs) Overloaded function.   1. legal_value(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool   2. legal_value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> bool   3. legal_value(rosetta.utility.options.VectorOption) -> bool   Legal value? lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. lower(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.Bound_std_string_t n(...) from builtins.PyCapsule n(*args, **kwargs) Overloaded function.   1. n(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. n(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> int   3. n(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Fixed number of values required assignment   4. n(rosetta.utility.options.VectorOption) -> int   Fixed number of values required (zero if none) n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> int n_lower(...) from builtins.PyCapsule n_lower(*args, **kwargs) Overloaded function.   1. n_lower(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. n_lower(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> int   3. n_lower(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Lower number of values allowed assignment   4. n_lower(rosetta.utility.options.VectorOption) -> int   Lower number of values allowed (zero if none) n_upper(...) from builtins.PyCapsule n_upper(*args, **kwargs) Overloaded function.   1. n_upper(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. n_upper(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> int   3. n_upper(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Upper number of values allowed assignment   4. n_upper(rosetta.utility.options.VectorOption) -> int   Upper number of values allowed (zero if none) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str push_back(...) from builtins.PyCapsule push_back(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a VectorOption & return type. This will separate arguments into  blocks grouped by quotes, and then separate the non-quote-delimited  arguments by whitespace short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str   2. short_description(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, s : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t size(...) from builtins.PyCapsule size(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. to_default(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. upper(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.Bound_std_string_t user(...) from builtins.PyCapsule user(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool user_or(...) from builtins.PyCapsule user_or(*args, **kwargs) Overloaded function.   1. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : rosetta.utility.vector1_std_string) -> rosetta.utility.vector1_std_string   2. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, i : int, value_a : str) -> str value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : rosetta.utility.vector1_std_string) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   3. value(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.vector1_std_string   4. value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, i : int) -> str value_or(...) from builtins.PyCapsule value_or(*args, **kwargs) Overloaded function.   1. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : rosetta.utility.vector1_std_string) -> rosetta.utility.vector1_std_string   2. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, i : int, value_a : str) -> str value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType   class StringVectorOptionKey(VectorOptionKey)     Automatic hidden index key for string options     Method resolution order: StringVectorOptionKey VectorOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.utility.options.StringVectorOptionKey, str) -> NoneType   doc   3. __init__(handle, rosetta.utility.options.StringVectorOptionKey, str, str) -> NoneType   doc   4. __init__(self : handle, key : rosetta.utility.options.StringVectorOptionKey, id_a : str, identifier_a : str, code_a : str) -> NoneType   5. __init__(self : handle, key : rosetta.utility.keys.Key) -> NoneType   6. __init__(handle, rosetta.utility.keys.Key, str) -> NoneType   doc   7. __init__(handle, rosetta.utility.keys.Key, str, str) -> NoneType   doc   8. __init__(self : handle, key : rosetta.utility.keys.Key, id_a : str, identifier_a : str, code_a : str) -> NoneType   9. __init__(handle, str) -> NoneType   doc   10. __init__(handle, str, str) -> NoneType   doc   11. __init__(self : handle, id_a : str, identifier_a : str, code_a : str) -> NoneType   12. __init__(handle, rosetta.utility.options.StringVectorOptionKey) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.StringVectorOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.StringVectorOptionKey   Key assignment   2. assign(self : rosetta.utility.options.StringVectorOptionKey,  : rosetta.utility.options.StringVectorOptionKey) -> rosetta.utility.options.StringVectorOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.StringVectorOptionKey) -> rosetta.utility.options.StringVectorOptionKey   Clone this Methods inherited from VectorOptionKey: scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.VectorOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.VectorOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class VectorOption(Option)     Program vector-valued option interface class     Method resolution order: VectorOption Option builtins.object Methods defined here: __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Activate cl_value(...) from builtins.PyCapsule cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> rosetta.utility.options.VectorOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clear clone(...) from builtins.PyCapsule clone(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clone this deactivate(...) from builtins.PyCapsule deactivate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Deactivate fixed_size(...) from builtins.PyCapsule fixed_size(rosetta.utility.options.VectorOption) -> bool   Fixed number of values required? legal_default_size(...) from builtins.PyCapsule legal_default_size(rosetta.utility.options.VectorOption) -> bool   Legal default value size? legal_default_value(...) from builtins.PyCapsule legal_default_value(rosetta.utility.options.VectorOption) -> bool   Legal or inactive default value? legal_size(...) from builtins.PyCapsule legal_size(rosetta.utility.options.VectorOption) -> bool   Legal value size? legal_value(...) from builtins.PyCapsule legal_value(rosetta.utility.options.VectorOption) -> bool   Legal value? n(...) from builtins.PyCapsule n(*args, **kwargs) Overloaded function.   1. n(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Fixed number of values required assignment   2. n(rosetta.utility.options.VectorOption) -> int   Fixed number of values required (zero if none) n_lower(...) from builtins.PyCapsule n_lower(*args, **kwargs) Overloaded function.   1. n_lower(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Lower number of values allowed assignment   2. n_lower(rosetta.utility.options.VectorOption) -> int   Lower number of values allowed (zero if none) n_upper(...) from builtins.PyCapsule n_upper(*args, **kwargs) Overloaded function.   1. n_upper(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Upper number of values allowed assignment   2. n_upper(rosetta.utility.options.VectorOption) -> int   Upper number of values allowed (zero if none) set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a VectorOption & return type. This will separate arguments into  blocks grouped by quotes, and then separate the non-quote-delimited  arguments by whitespace to_default(...) from builtins.PyCapsule to_default(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Set to default value, if any Methods inherited from Option: active(...) from builtins.PyCapsule active(rosetta.utility.options.Option) -> bool   Active?  That is, the option has some value, either the default one or specified on the command line. been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.Option) -> bool   Can another value be added and stay within any size constraints? check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType code(...) from builtins.PyCapsule code(rosetta.utility.options.Option) -> str   Code copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.Option, other : rosetta.utility.options.Option) -> NoneType   Copy operation -- requires that other match the type of this. default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.Option) -> bool   Default active? default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.Option) -> bool   Default inactive? default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.Option) -> int   Default size (number of default values) default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.Option) -> str   Default value string representation description(...) from builtins.PyCapsule description(rosetta.utility.options.Option) -> str   Description equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.Option) -> str   =Value string representation has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.Option) -> bool   Has a default? id(...) from builtins.PyCapsule id(rosetta.utility.options.Option) -> str   ID identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.Option) -> str   Identifier is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? key(...) from builtins.PyCapsule key(rosetta.utility.options.Option) -> rosetta.utility.options.OptionKey   Key legal(...) from builtins.PyCapsule legal(rosetta.utility.options.Option) -> bool   Legal value? legal_check(...) from builtins.PyCapsule legal_check(rosetta.utility.options.Option) -> NoneType   Legal value check legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.Option) -> bool   Legal or inactive default value? legal_default_check(...) from builtins.PyCapsule legal_default_check(rosetta.utility.options.Option) -> NoneType   Legal default value check legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.Option) -> bool   Legal default value check: Report and return error state legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.Option) -> bool   Legal value limits check: Report and return error state legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.Option) -> bool   Legal value check: Report and return error state legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.Option) -> bool   Legal size limits check: Report and return error state legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.Option) -> bool   Legal specifications check: Report and return error state legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.Option) -> str   Legal value string representation n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.Option) -> int   Number of default values (default size) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.Option) -> int   Number of values (size) name(...) from builtins.PyCapsule name(rosetta.utility.options.Option) -> str   Name raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.Option) -> str   Default value string representation raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.Option) -> str   Value string representation restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType short_description(...) from builtins.PyCapsule short_description(rosetta.utility.options.Option) -> str   short_Description size(...) from builtins.PyCapsule size(rosetta.utility.options.Option) -> int   Size (number of values) size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.Option) -> str   Size constraint string representation specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.Option) -> NoneType   Required specified option check specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.Option) -> bool   Required specified option check: Report and return error state type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation user(...) from builtins.PyCapsule user(rosetta.utility.options.Option) -> bool   User-specified?  That is, the option value was specified on the command line.  You should probably use active() instead in almost all cases! value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.Option) -> str   Value string representation   class VectorOptionKey(OptionKey)     Abstract automatic hidden index key for vector-valued options     Method resolution order: VectorOptionKey OptionKey rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t rosetta.utility.keys.Key builtins.object Methods defined here: __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(*args, **kwargs) Overloaded function.   1. assign(self : rosetta.utility.options.VectorOptionKey, key : rosetta.utility.keys.Key) -> rosetta.utility.options.VectorOptionKey   Key assignment   2. assign(self : rosetta.utility.options.VectorOptionKey,  : rosetta.utility.options.VectorOptionKey) -> rosetta.utility.options.VectorOptionKey clone(...) from builtins.PyCapsule clone(rosetta.utility.options.VectorOptionKey) -> rosetta.utility.options.VectorOptionKey   Clone this scalar(...) from builtins.PyCapsule scalar(rosetta.utility.options.VectorOptionKey) -> bool   Scalar option key? vector(...) from builtins.PyCapsule vector(rosetta.utility.options.VectorOptionKey) -> bool   Vector option key? Methods inherited from rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t: code(...) from builtins.PyCapsule code(*args, **kwargs) Overloaded function.   1. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. code(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. code(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, code_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. code(rosetta.utility.keys.Key) -> str   Code   5. code(rosetta.utility.keys.Key) -> str   Code   6. code(self : rosetta.utility.keys.Key, code_a : str) -> rosetta.utility.keys.Key   Code assignment id(...) from builtins.PyCapsule id(*args, **kwargs) Overloaded function.   1. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. id(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. id(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, id_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. id(rosetta.utility.keys.Key) -> str   ID   5. id(rosetta.utility.keys.Key) -> str   ID   6. id(self : rosetta.utility.keys.Key, id_a : str) -> rosetta.utility.keys.Key   ID assignment identifier(...) from builtins.PyCapsule identifier(*args, **kwargs) Overloaded function.   1. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   2. identifier(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> str   3. identifier(self : rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t, identifier_a : str) -> rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t   4. identifier(rosetta.utility.keys.Key) -> str   Identifier   5. identifier(rosetta.utility.keys.Key) -> str   Identifier   6. identifier(self : rosetta.utility.keys.Key, identifier_a : str) -> rosetta.utility.keys.Key   Identifier assignment n_key(...) from builtins.PyCapsule n_key() -> int private_index(...) from builtins.PyCapsule private_index(*args, **kwargs) Overloaded function.   1. private_index(rosetta.utility.keys.AutoKey_utility_options_Option_utility_keys_Key_utility_keys_NoClient_t) -> int   2. private_index(rosetta.utility.keys.Key) -> int   Index       Only for use as an optimization: DO NOT WRITE CODE DEPENDING ON THE SPECIFIC INDEX VALUE!   class VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t(VectorOption)       Method resolution order: VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t VectorOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : rosetta.utility.vector1_bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   3. __call__(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.vector1_bool   4. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, i : int) -> bool __getitem__(...) from builtins.PyCapsule __getitem__(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, i : int) -> bool __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. activate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_str : str) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> rosetta.utility.options.VectorOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. clear(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clear clone(...) from builtins.PyCapsule clone(*args, **kwargs) Overloaded function.   1. clone(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. clone(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clone this code(...) from builtins.PyCapsule code(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. deactivate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Deactivate def(...) from builtins.PyCapsule def(*args, **kwargs) Overloaded function.   1. def(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. def(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   3. def(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : rosetta.utility.vector1_bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, option : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : rosetta.utility.vector1_bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   3. default_value(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.vector1_bool   4. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, i : int) -> bool description(...) from builtins.PyCapsule description(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str fixed_size(...) from builtins.PyCapsule fixed_size(*args, **kwargs) Overloaded function.   1. fixed_size(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool   2. fixed_size(rosetta.utility.options.VectorOption) -> bool   Fixed number of values required? has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool has_value(...) from builtins.PyCapsule has_value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value : bool) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.options.BooleanVectorOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. legal(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> NoneType   2. legal_check(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool legal_default_size(...) from builtins.PyCapsule legal_default_size(*args, **kwargs) Overloaded function.   1. legal_default_size(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool   2. legal_default_size(rosetta.utility.options.VectorOption) -> bool   Legal default value size? legal_default_value(...) from builtins.PyCapsule legal_default_value(*args, **kwargs) Overloaded function.   1. legal_default_value(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool   2. legal_default_value(rosetta.utility.options.VectorOption) -> bool   Legal or inactive default value? legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool legal_size(...) from builtins.PyCapsule legal_size(*args, **kwargs) Overloaded function.   1. legal_size(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool   2. legal_size(rosetta.utility.options.VectorOption) -> bool   Legal value size? legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str legal_value(...) from builtins.PyCapsule legal_value(*args, **kwargs) Overloaded function.   1. legal_value(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool   2. legal_value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> bool   3. legal_value(rosetta.utility.options.VectorOption) -> bool   Legal value? lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. lower(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.Bound_bool_t n(...) from builtins.PyCapsule n(*args, **kwargs) Overloaded function.   1. n(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. n(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> int   3. n(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Fixed number of values required assignment   4. n(rosetta.utility.options.VectorOption) -> int   Fixed number of values required (zero if none) n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> int n_lower(...) from builtins.PyCapsule n_lower(*args, **kwargs) Overloaded function.   1. n_lower(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. n_lower(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> int   3. n_lower(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Lower number of values allowed assignment   4. n_lower(rosetta.utility.options.VectorOption) -> int   Lower number of values allowed (zero if none) n_upper(...) from builtins.PyCapsule n_upper(*args, **kwargs) Overloaded function.   1. n_upper(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. n_upper(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> int   3. n_upper(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Upper number of values allowed assignment   4. n_upper(rosetta.utility.options.VectorOption) -> int   Upper number of values allowed (zero if none) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str push_back(...) from builtins.PyCapsule push_back(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a VectorOption & return type. This will separate arguments into  blocks grouped by quotes, and then separate the non-quote-delimited  arguments by whitespace short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str   2. short_description(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, s : str) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t size(...) from builtins.PyCapsule size(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. to_default(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. upper(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.Bound_bool_t user(...) from builtins.PyCapsule user(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> bool user_or(...) from builtins.PyCapsule user_or(*args, **kwargs) Overloaded function.   1. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : rosetta.utility.vector1_bool) -> rosetta.utility.vector1_bool   2. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, i : int, value_a : bool) -> bool value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   2. value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : rosetta.utility.vector1_bool) -> rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t   3. value(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> rosetta.utility.vector1_bool   4. value(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, i : int) -> bool value_or(...) from builtins.PyCapsule value_or(*args, **kwargs) Overloaded function.   1. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, value_a : rosetta.utility.vector1_bool) -> rosetta.utility.vector1_bool   2. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t, i : int, value_a : bool) -> bool value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.VectorOption_T__utility_options_BooleanVectorOptionKey_bool_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation   class VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t(VectorOption)       Method resolution order: VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t VectorOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.vector1_utility_file_FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   3. __call__(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.vector1_utility_file_FileName   4. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, i : int) -> rosetta.utility.file.FileName __getitem__(...) from builtins.PyCapsule __getitem__(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, i : int) -> rosetta.utility.file.FileName __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. activate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_str : str) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> rosetta.utility.options.VectorOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. clear(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clear clone(...) from builtins.PyCapsule clone(*args, **kwargs) Overloaded function.   1. clone(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. clone(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clone this code(...) from builtins.PyCapsule code(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. deactivate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Deactivate def(...) from builtins.PyCapsule def(*args, **kwargs) Overloaded function.   1. def(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. def(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   3. def(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.vector1_utility_file_FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, option : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.vector1_utility_file_FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   3. default_value(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.vector1_utility_file_FileName   4. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, i : int) -> rosetta.utility.file.FileName description(...) from builtins.PyCapsule description(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str fixed_size(...) from builtins.PyCapsule fixed_size(*args, **kwargs) Overloaded function.   1. fixed_size(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool   2. fixed_size(rosetta.utility.options.VectorOption) -> bool   Fixed number of values required? has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool has_value(...) from builtins.PyCapsule has_value(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value : rosetta.utility.file.FileName) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.options.FileVectorOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. legal(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> NoneType   2. legal_check(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool legal_default_size(...) from builtins.PyCapsule legal_default_size(*args, **kwargs) Overloaded function.   1. legal_default_size(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool   2. legal_default_size(rosetta.utility.options.VectorOption) -> bool   Legal default value size? legal_default_value(...) from builtins.PyCapsule legal_default_value(*args, **kwargs) Overloaded function.   1. legal_default_value(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool   2. legal_default_value(rosetta.utility.options.VectorOption) -> bool   Legal or inactive default value? legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool legal_size(...) from builtins.PyCapsule legal_size(*args, **kwargs) Overloaded function.   1. legal_size(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool   2. legal_size(rosetta.utility.options.VectorOption) -> bool   Legal value size? legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str legal_value(...) from builtins.PyCapsule legal_value(*args, **kwargs) Overloaded function.   1. legal_value(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool   2. legal_value(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> bool   3. legal_value(rosetta.utility.options.VectorOption) -> bool   Legal value? lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. lower(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.Bound_utility_file_FileName_t n(...) from builtins.PyCapsule n(*args, **kwargs) Overloaded function.   1. n(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. n(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> int   3. n(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Fixed number of values required assignment   4. n(rosetta.utility.options.VectorOption) -> int   Fixed number of values required (zero if none) n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> int n_lower(...) from builtins.PyCapsule n_lower(*args, **kwargs) Overloaded function.   1. n_lower(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. n_lower(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> int   3. n_lower(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Lower number of values allowed assignment   4. n_lower(rosetta.utility.options.VectorOption) -> int   Lower number of values allowed (zero if none) n_upper(...) from builtins.PyCapsule n_upper(*args, **kwargs) Overloaded function.   1. n_upper(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. n_upper(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> int   3. n_upper(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Upper number of values allowed assignment   4. n_upper(rosetta.utility.options.VectorOption) -> int   Upper number of values allowed (zero if none) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str push_back(...) from builtins.PyCapsule push_back(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a VectorOption & return type. This will separate arguments into  blocks grouped by quotes, and then separate the non-quote-delimited  arguments by whitespace short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str   2. short_description(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, s : str) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t size(...) from builtins.PyCapsule size(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. to_default(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. upper(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.Bound_utility_file_FileName_t user(...) from builtins.PyCapsule user(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> bool user_or(...) from builtins.PyCapsule user_or(*args, **kwargs) Overloaded function.   1. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.vector1_utility_file_FileName) -> rosetta.utility.vector1_utility_file_FileName   2. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, i : int, value_a : rosetta.utility.file.FileName) -> rosetta.utility.file.FileName value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.file.FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   2. value(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.vector1_utility_file_FileName) -> rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t   3. value(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> rosetta.utility.vector1_utility_file_FileName   4. value(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, i : int) -> rosetta.utility.file.FileName value_or(...) from builtins.PyCapsule value_or(*args, **kwargs) Overloaded function.   1. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, value_a : rosetta.utility.vector1_utility_file_FileName) -> rosetta.utility.vector1_utility_file_FileName   2. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t, i : int, value_a : rosetta.utility.file.FileName) -> rosetta.utility.file.FileName value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.VectorOption_T__utility_options_FileVectorOptionKey_utility_file_FileName_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation   class VectorOption_T__utility_options_IntegerVectorOptionKey_int_t(VectorOption)       Method resolution order: VectorOption_T__utility_options_IntegerVectorOptionKey_int_t VectorOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   3. __call__(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.vector1_int   4. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, i : int) -> int __getitem__(...) from builtins.PyCapsule __getitem__(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, i : int) -> int __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. activate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_str : str) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> rosetta.utility.options.VectorOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. clear(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clear clone(...) from builtins.PyCapsule clone(*args, **kwargs) Overloaded function.   1. clone(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. clone(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clone this code(...) from builtins.PyCapsule code(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. deactivate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Deactivate def(...) from builtins.PyCapsule def(*args, **kwargs) Overloaded function.   1. def(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. def(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   3. def(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, option : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   3. default_value(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.vector1_int   4. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, i : int) -> int description(...) from builtins.PyCapsule description(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str fixed_size(...) from builtins.PyCapsule fixed_size(*args, **kwargs) Overloaded function.   1. fixed_size(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool   2. fixed_size(rosetta.utility.options.VectorOption) -> bool   Fixed number of values required? has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool has_value(...) from builtins.PyCapsule has_value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value : int) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.options.IntegerVectorOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. legal(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> NoneType   2. legal_check(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool legal_default_size(...) from builtins.PyCapsule legal_default_size(*args, **kwargs) Overloaded function.   1. legal_default_size(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool   2. legal_default_size(rosetta.utility.options.VectorOption) -> bool   Legal default value size? legal_default_value(...) from builtins.PyCapsule legal_default_value(*args, **kwargs) Overloaded function.   1. legal_default_value(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool   2. legal_default_value(rosetta.utility.options.VectorOption) -> bool   Legal or inactive default value? legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool legal_size(...) from builtins.PyCapsule legal_size(*args, **kwargs) Overloaded function.   1. legal_size(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool   2. legal_size(rosetta.utility.options.VectorOption) -> bool   Legal value size? legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str legal_value(...) from builtins.PyCapsule legal_value(*args, **kwargs) Overloaded function.   1. legal_value(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool   2. legal_value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> bool   3. legal_value(rosetta.utility.options.VectorOption) -> bool   Legal value? lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. lower(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.Bound_int_t n(...) from builtins.PyCapsule n(*args, **kwargs) Overloaded function.   1. n(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. n(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> int   3. n(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Fixed number of values required assignment   4. n(rosetta.utility.options.VectorOption) -> int   Fixed number of values required (zero if none) n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> int n_lower(...) from builtins.PyCapsule n_lower(*args, **kwargs) Overloaded function.   1. n_lower(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. n_lower(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> int   3. n_lower(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Lower number of values allowed assignment   4. n_lower(rosetta.utility.options.VectorOption) -> int   Lower number of values allowed (zero if none) n_upper(...) from builtins.PyCapsule n_upper(*args, **kwargs) Overloaded function.   1. n_upper(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. n_upper(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> int   3. n_upper(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Upper number of values allowed assignment   4. n_upper(rosetta.utility.options.VectorOption) -> int   Upper number of values allowed (zero if none) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str push_back(...) from builtins.PyCapsule push_back(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a VectorOption & return type. This will separate arguments into  blocks grouped by quotes, and then separate the non-quote-delimited  arguments by whitespace short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str   2. short_description(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, s : str) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t size(...) from builtins.PyCapsule size(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. to_default(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. upper(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.Bound_int_t user(...) from builtins.PyCapsule user(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> bool user_or(...) from builtins.PyCapsule user_or(*args, **kwargs) Overloaded function.   1. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.vector1_int   2. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, i : int, value_a : int) -> int value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   2. value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t   3. value(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> rosetta.utility.vector1_int   4. value(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, i : int) -> int value_or(...) from builtins.PyCapsule value_or(*args, **kwargs) Overloaded function.   1. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.vector1_int   2. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t, i : int, value_a : int) -> int value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.VectorOption_T__utility_options_IntegerVectorOptionKey_int_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation   class VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t(VectorOption)       Method resolution order: VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t VectorOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.vector1_utility_file_PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   3. __call__(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.vector1_utility_file_PathName   4. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, i : int) -> rosetta.utility.file.PathName __getitem__(...) from builtins.PyCapsule __getitem__(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, i : int) -> rosetta.utility.file.PathName __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. activate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_str : str) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> rosetta.utility.options.VectorOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. clear(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clear clone(...) from builtins.PyCapsule clone(*args, **kwargs) Overloaded function.   1. clone(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. clone(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clone this code(...) from builtins.PyCapsule code(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. deactivate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Deactivate def(...) from builtins.PyCapsule def(*args, **kwargs) Overloaded function.   1. def(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. def(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   3. def(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.vector1_utility_file_PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, option : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.vector1_utility_file_PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   3. default_value(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.vector1_utility_file_PathName   4. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, i : int) -> rosetta.utility.file.PathName description(...) from builtins.PyCapsule description(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str fixed_size(...) from builtins.PyCapsule fixed_size(*args, **kwargs) Overloaded function.   1. fixed_size(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool   2. fixed_size(rosetta.utility.options.VectorOption) -> bool   Fixed number of values required? has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool has_value(...) from builtins.PyCapsule has_value(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value : rosetta.utility.file.PathName) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.options.PathVectorOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. legal(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> NoneType   2. legal_check(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool legal_default_size(...) from builtins.PyCapsule legal_default_size(*args, **kwargs) Overloaded function.   1. legal_default_size(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool   2. legal_default_size(rosetta.utility.options.VectorOption) -> bool   Legal default value size? legal_default_value(...) from builtins.PyCapsule legal_default_value(*args, **kwargs) Overloaded function.   1. legal_default_value(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool   2. legal_default_value(rosetta.utility.options.VectorOption) -> bool   Legal or inactive default value? legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool legal_size(...) from builtins.PyCapsule legal_size(*args, **kwargs) Overloaded function.   1. legal_size(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool   2. legal_size(rosetta.utility.options.VectorOption) -> bool   Legal value size? legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str legal_value(...) from builtins.PyCapsule legal_value(*args, **kwargs) Overloaded function.   1. legal_value(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool   2. legal_value(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> bool   3. legal_value(rosetta.utility.options.VectorOption) -> bool   Legal value? lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. lower(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.Bound_utility_file_PathName_t n(...) from builtins.PyCapsule n(*args, **kwargs) Overloaded function.   1. n(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. n(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> int   3. n(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Fixed number of values required assignment   4. n(rosetta.utility.options.VectorOption) -> int   Fixed number of values required (zero if none) n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> int n_lower(...) from builtins.PyCapsule n_lower(*args, **kwargs) Overloaded function.   1. n_lower(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. n_lower(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> int   3. n_lower(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Lower number of values allowed assignment   4. n_lower(rosetta.utility.options.VectorOption) -> int   Lower number of values allowed (zero if none) n_upper(...) from builtins.PyCapsule n_upper(*args, **kwargs) Overloaded function.   1. n_upper(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. n_upper(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> int   3. n_upper(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Upper number of values allowed assignment   4. n_upper(rosetta.utility.options.VectorOption) -> int   Upper number of values allowed (zero if none) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str push_back(...) from builtins.PyCapsule push_back(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a VectorOption & return type. This will separate arguments into  blocks grouped by quotes, and then separate the non-quote-delimited  arguments by whitespace short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str   2. short_description(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, s : str) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t size(...) from builtins.PyCapsule size(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. to_default(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. upper(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.Bound_utility_file_PathName_t user(...) from builtins.PyCapsule user(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> bool user_or(...) from builtins.PyCapsule user_or(*args, **kwargs) Overloaded function.   1. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.vector1_utility_file_PathName) -> rosetta.utility.vector1_utility_file_PathName   2. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, i : int, value_a : rosetta.utility.file.PathName) -> rosetta.utility.file.PathName value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.file.PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   2. value(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.vector1_utility_file_PathName) -> rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t   3. value(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> rosetta.utility.vector1_utility_file_PathName   4. value(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, i : int) -> rosetta.utility.file.PathName value_or(...) from builtins.PyCapsule value_or(*args, **kwargs) Overloaded function.   1. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, value_a : rosetta.utility.vector1_utility_file_PathName) -> rosetta.utility.vector1_utility_file_PathName   2. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t, i : int, value_a : rosetta.utility.file.PathName) -> rosetta.utility.file.PathName value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.VectorOption_T__utility_options_PathVectorOptionKey_utility_file_PathName_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation   class VectorOption_T__utility_options_RealVectorOptionKey_double_t(VectorOption)       Method resolution order: VectorOption_T__utility_options_RealVectorOptionKey_double_t VectorOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : rosetta.utility.vector1_double) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   3. __call__(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.vector1_double   4. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, i : int) -> float __getitem__(...) from builtins.PyCapsule __getitem__(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, i : int) -> float __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. activate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_str : str) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> rosetta.utility.options.VectorOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. clear(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clear clone(...) from builtins.PyCapsule clone(*args, **kwargs) Overloaded function.   1. clone(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. clone(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clone this code(...) from builtins.PyCapsule code(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. deactivate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Deactivate def(...) from builtins.PyCapsule def(*args, **kwargs) Overloaded function.   1. def(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. def(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   3. def(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : rosetta.utility.vector1_double) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, option : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : rosetta.utility.vector1_double) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   3. default_value(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.vector1_double   4. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, i : int) -> float description(...) from builtins.PyCapsule description(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str fixed_size(...) from builtins.PyCapsule fixed_size(*args, **kwargs) Overloaded function.   1. fixed_size(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool   2. fixed_size(rosetta.utility.options.VectorOption) -> bool   Fixed number of values required? has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool has_value(...) from builtins.PyCapsule has_value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value : float) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.options.RealVectorOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. legal(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> NoneType   2. legal_check(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool legal_default_size(...) from builtins.PyCapsule legal_default_size(*args, **kwargs) Overloaded function.   1. legal_default_size(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool   2. legal_default_size(rosetta.utility.options.VectorOption) -> bool   Legal default value size? legal_default_value(...) from builtins.PyCapsule legal_default_value(*args, **kwargs) Overloaded function.   1. legal_default_value(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool   2. legal_default_value(rosetta.utility.options.VectorOption) -> bool   Legal or inactive default value? legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool legal_size(...) from builtins.PyCapsule legal_size(*args, **kwargs) Overloaded function.   1. legal_size(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool   2. legal_size(rosetta.utility.options.VectorOption) -> bool   Legal value size? legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str legal_value(...) from builtins.PyCapsule legal_value(*args, **kwargs) Overloaded function.   1. legal_value(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool   2. legal_value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> bool   3. legal_value(rosetta.utility.options.VectorOption) -> bool   Legal value? lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. lower(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.Bound_double_t n(...) from builtins.PyCapsule n(*args, **kwargs) Overloaded function.   1. n(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. n(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> int   3. n(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Fixed number of values required assignment   4. n(rosetta.utility.options.VectorOption) -> int   Fixed number of values required (zero if none) n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> int n_lower(...) from builtins.PyCapsule n_lower(*args, **kwargs) Overloaded function.   1. n_lower(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. n_lower(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> int   3. n_lower(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Lower number of values allowed assignment   4. n_lower(rosetta.utility.options.VectorOption) -> int   Lower number of values allowed (zero if none) n_upper(...) from builtins.PyCapsule n_upper(*args, **kwargs) Overloaded function.   1. n_upper(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. n_upper(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> int   3. n_upper(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Upper number of values allowed assignment   4. n_upper(rosetta.utility.options.VectorOption) -> int   Upper number of values allowed (zero if none) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str push_back(...) from builtins.PyCapsule push_back(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a VectorOption & return type. This will separate arguments into  blocks grouped by quotes, and then separate the non-quote-delimited  arguments by whitespace short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str   2. short_description(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, s : str) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t size(...) from builtins.PyCapsule size(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. to_default(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. upper(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.Bound_double_t user(...) from builtins.PyCapsule user(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> bool user_or(...) from builtins.PyCapsule user_or(*args, **kwargs) Overloaded function.   1. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : rosetta.utility.vector1_double) -> rosetta.utility.vector1_double   2. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, i : int, value_a : float) -> float value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : float) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   2. value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : rosetta.utility.vector1_double) -> rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t   3. value(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> rosetta.utility.vector1_double   4. value(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, i : int) -> float value_or(...) from builtins.PyCapsule value_or(*args, **kwargs) Overloaded function.   1. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, value_a : rosetta.utility.vector1_double) -> rosetta.utility.vector1_double   2. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t, i : int, value_a : float) -> float value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.VectorOption_T__utility_options_RealVectorOptionKey_double_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation   class VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t(VectorOption)       Method resolution order: VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t VectorOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   3. __call__(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.vector1_int   4. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, i : int) -> int __getitem__(...) from builtins.PyCapsule __getitem__(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, i : int) -> int __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. activate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_str : str) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> rosetta.utility.options.VectorOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. clear(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clear clone(...) from builtins.PyCapsule clone(*args, **kwargs) Overloaded function.   1. clone(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. clone(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clone this code(...) from builtins.PyCapsule code(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. deactivate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Deactivate def(...) from builtins.PyCapsule def(*args, **kwargs) Overloaded function.   1. def(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. def(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   3. def(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, option : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   3. default_value(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.vector1_int   4. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, i : int) -> int description(...) from builtins.PyCapsule description(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str fixed_size(...) from builtins.PyCapsule fixed_size(*args, **kwargs) Overloaded function.   1. fixed_size(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool   2. fixed_size(rosetta.utility.options.VectorOption) -> bool   Fixed number of values required? has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool has_value(...) from builtins.PyCapsule has_value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value : int) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.options.ResidueChainVectorOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. legal(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> NoneType   2. legal_check(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool legal_default_size(...) from builtins.PyCapsule legal_default_size(*args, **kwargs) Overloaded function.   1. legal_default_size(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool   2. legal_default_size(rosetta.utility.options.VectorOption) -> bool   Legal default value size? legal_default_value(...) from builtins.PyCapsule legal_default_value(*args, **kwargs) Overloaded function.   1. legal_default_value(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool   2. legal_default_value(rosetta.utility.options.VectorOption) -> bool   Legal or inactive default value? legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool legal_size(...) from builtins.PyCapsule legal_size(*args, **kwargs) Overloaded function.   1. legal_size(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool   2. legal_size(rosetta.utility.options.VectorOption) -> bool   Legal value size? legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str legal_value(...) from builtins.PyCapsule legal_value(*args, **kwargs) Overloaded function.   1. legal_value(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool   2. legal_value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> bool   3. legal_value(rosetta.utility.options.VectorOption) -> bool   Legal value? lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. lower(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.Bound_int_t n(...) from builtins.PyCapsule n(*args, **kwargs) Overloaded function.   1. n(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. n(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> int   3. n(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Fixed number of values required assignment   4. n(rosetta.utility.options.VectorOption) -> int   Fixed number of values required (zero if none) n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> int n_lower(...) from builtins.PyCapsule n_lower(*args, **kwargs) Overloaded function.   1. n_lower(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. n_lower(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> int   3. n_lower(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Lower number of values allowed assignment   4. n_lower(rosetta.utility.options.VectorOption) -> int   Lower number of values allowed (zero if none) n_upper(...) from builtins.PyCapsule n_upper(*args, **kwargs) Overloaded function.   1. n_upper(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. n_upper(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> int   3. n_upper(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Upper number of values allowed assignment   4. n_upper(rosetta.utility.options.VectorOption) -> int   Upper number of values allowed (zero if none) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str push_back(...) from builtins.PyCapsule push_back(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a VectorOption & return type. This will separate arguments into  blocks grouped by quotes, and then separate the non-quote-delimited  arguments by whitespace short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str   2. short_description(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, s : str) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t size(...) from builtins.PyCapsule size(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. to_default(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. upper(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.Bound_int_t user(...) from builtins.PyCapsule user(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> bool user_or(...) from builtins.PyCapsule user_or(*args, **kwargs) Overloaded function.   1. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.vector1_int   2. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, i : int, value_a : int) -> int value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   2. value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t   3. value(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> rosetta.utility.vector1_int   4. value(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, i : int) -> int value_or(...) from builtins.PyCapsule value_or(*args, **kwargs) Overloaded function.   1. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, value_a : rosetta.utility.vector1_int) -> rosetta.utility.vector1_int   2. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t, i : int, value_a : int) -> int value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.VectorOption_T__utility_options_ResidueChainVectorOptionKey_int_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation   class VectorOption_T__utility_options_StringVectorOptionKey_std_string_t(VectorOption)       Method resolution order: VectorOption_T__utility_options_StringVectorOptionKey_std_string_t VectorOption Option builtins.object Methods defined here: __call__(...) from builtins.PyCapsule __call__(*args, **kwargs) Overloaded function.   1. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : rosetta.utility.vector1_std_string) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   3. __call__(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.vector1_std_string   4. __call__(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, i : int) -> str __getitem__(...) from builtins.PyCapsule __getitem__(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, i : int) -> str __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. activate(...) from builtins.PyCapsule activate(*args, **kwargs) Overloaded function.   1. activate(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. activate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Activate active(...) from builtins.PyCapsule active(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool can_hold_another(...) from builtins.PyCapsule can_hold_another(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool cl_value(...) from builtins.PyCapsule cl_value(*args, **kwargs) Overloaded function.   1. cl_value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_str : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> rosetta.utility.options.VectorOption   Value assignment from a command line string clear(...) from builtins.PyCapsule clear(*args, **kwargs) Overloaded function.   1. clear(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. clear(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clear clone(...) from builtins.PyCapsule clone(*args, **kwargs) Overloaded function.   1. clone(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. clone(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Clone this code(...) from builtins.PyCapsule code(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str copy_from(...) from builtins.PyCapsule copy_from(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, other : rosetta.utility.options.Option) -> NoneType deactivate(...) from builtins.PyCapsule deactivate(*args, **kwargs) Overloaded function.   1. deactivate(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. deactivate(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Deactivate def(...) from builtins.PyCapsule def(*args, **kwargs) Overloaded function.   1. def(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. def(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   3. def(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : rosetta.utility.vector1_std_string) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t default_active(...) from builtins.PyCapsule default_active(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool default_inactive(...) from builtins.PyCapsule default_inactive(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool default_size(...) from builtins.PyCapsule default_size(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> int default_string(...) from builtins.PyCapsule default_string(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str default_to(...) from builtins.PyCapsule default_to(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, option : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t default_value(...) from builtins.PyCapsule default_value(*args, **kwargs) Overloaded function.   1. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : rosetta.utility.vector1_std_string) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   3. default_value(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.vector1_std_string   4. default_value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, i : int) -> str description(...) from builtins.PyCapsule description(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str equals_string(...) from builtins.PyCapsule equals_string(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str fixed_size(...) from builtins.PyCapsule fixed_size(*args, **kwargs) Overloaded function.   1. fixed_size(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool   2. fixed_size(rosetta.utility.options.VectorOption) -> bool   Fixed number of values required? has_any_of_characters(...) from builtins.PyCapsule has_any_of_characters(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, str_ : str, s : str) -> bool has_default(...) from builtins.PyCapsule has_default(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool has_value(...) from builtins.PyCapsule has_value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value : str) -> bool id(...) from builtins.PyCapsule id(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str identifier(...) from builtins.PyCapsule identifier(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str key(...) from builtins.PyCapsule key(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.options.StringVectorOptionKey legal(...) from builtins.PyCapsule legal(*args, **kwargs) Overloaded function.   1. legal(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. legal(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool legal_check(...) from builtins.PyCapsule legal_check(*args, **kwargs) Overloaded function.   1. legal_check(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> NoneType   2. legal_check(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> NoneType legal_default(...) from builtins.PyCapsule legal_default(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool legal_default_check(...) from builtins.PyCapsule legal_default_check(*args, **kwargs) Overloaded function.   1. legal_default_check(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> NoneType   2. legal_default_check(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> NoneType legal_default_report(...) from builtins.PyCapsule legal_default_report(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool legal_default_size(...) from builtins.PyCapsule legal_default_size(*args, **kwargs) Overloaded function.   1. legal_default_size(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool   2. legal_default_size(rosetta.utility.options.VectorOption) -> bool   Legal default value size? legal_default_value(...) from builtins.PyCapsule legal_default_value(*args, **kwargs) Overloaded function.   1. legal_default_value(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool   2. legal_default_value(rosetta.utility.options.VectorOption) -> bool   Legal or inactive default value? legal_limits_report(...) from builtins.PyCapsule legal_limits_report(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool legal_report(...) from builtins.PyCapsule legal_report(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool legal_size(...) from builtins.PyCapsule legal_size(*args, **kwargs) Overloaded function.   1. legal_size(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool   2. legal_size(rosetta.utility.options.VectorOption) -> bool   Legal value size? legal_size_report(...) from builtins.PyCapsule legal_size_report(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool legal_specs_report(...) from builtins.PyCapsule legal_specs_report(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool legal_string(...) from builtins.PyCapsule legal_string(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str legal_value(...) from builtins.PyCapsule legal_value(*args, **kwargs) Overloaded function.   1. legal_value(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool   2. legal_value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> bool   3. legal_value(rosetta.utility.options.VectorOption) -> bool   Legal value? lower(...) from builtins.PyCapsule lower(*args, **kwargs) Overloaded function.   1. lower(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. lower(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.Bound_std_string_t n(...) from builtins.PyCapsule n(*args, **kwargs) Overloaded function.   1. n(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. n(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> int   3. n(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Fixed number of values required assignment   4. n(rosetta.utility.options.VectorOption) -> int   Fixed number of values required (zero if none) n_default_value(...) from builtins.PyCapsule n_default_value(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> int n_lower(...) from builtins.PyCapsule n_lower(*args, **kwargs) Overloaded function.   1. n_lower(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. n_lower(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> int   3. n_lower(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Lower number of values allowed assignment   4. n_lower(rosetta.utility.options.VectorOption) -> int   Lower number of values allowed (zero if none) n_upper(...) from builtins.PyCapsule n_upper(*args, **kwargs) Overloaded function.   1. n_upper(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, n_a : int) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. n_upper(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> int   3. n_upper(self : rosetta.utility.options.VectorOption, n_a : int) -> rosetta.utility.options.VectorOption   Upper number of values allowed assignment   4. n_upper(rosetta.utility.options.VectorOption) -> int   Upper number of values allowed (zero if none) n_value(...) from builtins.PyCapsule n_value(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> int name(...) from builtins.PyCapsule name(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str push_back(...) from builtins.PyCapsule push_back(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t raw_default_string(...) from builtins.PyCapsule raw_default_string(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str raw_value_string(...) from builtins.PyCapsule raw_value_string(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str set_cl_value(...) from builtins.PyCapsule set_cl_value(self : rosetta.utility.options.VectorOption, value_str : str) -> NoneType   Value assignemt from a command line string but without  a VectorOption & return type. This will separate arguments into  blocks grouped by quotes, and then separate the non-quote-delimited  arguments by whitespace short_description(...) from builtins.PyCapsule short_description(*args, **kwargs) Overloaded function.   1. short_description(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str   2. short_description(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, sd : str) -> NoneType shortd(...) from builtins.PyCapsule shortd(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, s : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t size(...) from builtins.PyCapsule size(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> int size_constraint_string(...) from builtins.PyCapsule size_constraint_string(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str specified_check(...) from builtins.PyCapsule specified_check(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> NoneType specified_report(...) from builtins.PyCapsule specified_report(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool strict_lower(...) from builtins.PyCapsule strict_lower(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t strict_upper(...) from builtins.PyCapsule strict_upper(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t to_default(...) from builtins.PyCapsule to_default(*args, **kwargs) Overloaded function.   1. to_default(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. to_default(rosetta.utility.options.VectorOption) -> rosetta.utility.options.VectorOption   Set to default value, if any upper(...) from builtins.PyCapsule upper(*args, **kwargs) Overloaded function.   1. upper(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. upper(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.Bound_std_string_t user(...) from builtins.PyCapsule user(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> bool user_or(...) from builtins.PyCapsule user_or(*args, **kwargs) Overloaded function.   1. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : rosetta.utility.vector1_std_string) -> rosetta.utility.vector1_std_string   2. user_or(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, i : int, value_a : str) -> str value(...) from builtins.PyCapsule value(*args, **kwargs) Overloaded function.   1. value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : str) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   2. value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : rosetta.utility.vector1_std_string) -> rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t   3. value(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> rosetta.utility.vector1_std_string   4. value(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, i : int) -> str value_or(...) from builtins.PyCapsule value_or(*args, **kwargs) Overloaded function.   1. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, value_a : rosetta.utility.vector1_std_string) -> rosetta.utility.vector1_std_string   2. value_or(self : rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t, i : int, value_a : str) -> str value_string(...) from builtins.PyCapsule value_string(rosetta.utility.options.VectorOption_T__utility_options_StringVectorOptionKey_std_string_t) -> str Methods inherited from Option: been_accessed(...) from builtins.PyCapsule been_accessed(rosetta.utility.options.Option) -> NoneType   Set access property to true. check_restricted_access(...) from builtins.PyCapsule check_restricted_access(self : rosetta.utility.options.Option, do_check : bool) -> NoneType is_been_accessed(...) from builtins.PyCapsule is_been_accessed(rosetta.utility.options.Option) -> bool   Return true if option value was anyhow accessed. is_cl_value(...) from builtins.PyCapsule is_cl_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type and a legal command line value? is_group(...) from builtins.PyCapsule is_group(*args, **kwargs) Overloaded function.   1. is_group(self : rosetta.utility.options.Option, value : bool) -> rosetta.utility.options.Option   2. is_group(rosetta.utility.options.Option) -> bool   Is this the synonymous option for an option group (e.g. -in:file:file) is_value(...) from builtins.PyCapsule is_value(self : rosetta.utility.options.Option, value_str : str) -> bool   Is a string readable as this option's value type? restrict_access(...) from builtins.PyCapsule restrict_access(self : rosetta.utility.options.Option, setting : bool) -> rosetta.utility.options.Option   Restrict direct access to option for general use.      In the past, protocols were able to access the values  of options in the option system directly. However this tied  protocol behavior tightly to setting specific options on the  command line, making it difficult to use Rosetta using other  workflows. Now, options are accessed through the resource  manager, which has control over which options are passed to  which protocols.      basic::resource_manager::ResourceManager::get_instance()->get_option(key);    To incrementally deprectate direct usage of options, an option  is set to have restricted access in basic/options/options_rosetta.py set_accessed(...) from builtins.PyCapsule set_accessed(self : rosetta.utility.options.Option, setting : bool) -> NoneType type_string(...) from builtins.PyCapsule type_string(rosetta.utility.options.Option) -> str   Option type code string representation