| | |
- builtins.object
-
- EmptyVertexData
- EnergiesData
- MetricValueGetter
- RotamerRecovery
- SequenceComparison
- rosetta.core.pose.metrics.EnergyDependentCalculator(rosetta.core.pose.metrics.PoseMetricCalculator)
-
- BuriedUnsatisfiedPolarsCalculator
- DecomposeAndReweightEnergiesCalculator
- NonlocalContactsCalculator
- NumberHBondsCalculator
- SemiExplicitWaterUnsatisfiedPolarsCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator(rosetta.core.pose.metrics.PoseMetricCalculator)
-
- CatPiCalculator
- ChargeCalculator
- ClashCountCalculator
- FragQualCalculator
- HPatchCalculator
- InterGroupNeighborsCalculator
- NeighborhoodByDistanceCalculator
- NeighborsByDistanceCalculator
- PackstatCalculator
- PiPiCalculator
- ResidueDecompositionCalculator
-
- ResidueDecompositionByChainCalculator
- RotamerBoltzCalculator
- SHOBuriedUnsatisfiedPolarsCalculator
- SaltBridgeCalculator
- SurfaceCalculator
class BuriedUnsatisfiedPolarsCalculator(rosetta.core.pose.metrics.EnergyDependentCalculator) |
| | |
- Method resolution order:
- BuriedUnsatisfiedPolarsCalculator
- rosetta.core.pose.metrics.EnergyDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle, str, str) -> NoneType
doc
2. __init__(self : handle, sasa_calc : str, hbond_calc : str, burial_cutoff : float) -> NoneType
3. __init__(handle, str, str, rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t) -> NoneType
doc
4. __init__(self : handle, sasa_calc : str, hbond_calc : str, special_region : rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t, burial_cutoff : float) -> NoneType
5. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.BuriedUnsatisfiedPolarsCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.BuriedUnsatisfiedPolarsCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.BuriedUnsatisfiedPolarsCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.BuriedUnsatisfiedPolarsCalculator
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.BuriedUnsatisfiedPolarsCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
- name_of_hbond_calc(...) from builtins.PyCapsule
- name_of_hbond_calc(rosetta.protocols.toolbox.pose_metric_calculators.BuriedUnsatisfiedPolarsCalculator) -> str
- name_of_sasa_calc(...) from builtins.PyCapsule
- name_of_sasa_calc(rosetta.protocols.toolbox.pose_metric_calculators.BuriedUnsatisfiedPolarsCalculator) -> str
Methods inherited from rosetta.core.pose.metrics.EnergyDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.EnergyDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.EnergyDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.EnergyDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
|
class CatPiCalculator(rosetta.core.pose.metrics.StructureDependentCalculator) |
| | |
- Method resolution order:
- CatPiCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(self : handle, dist_cutoff : float) -> NoneType
3. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.CatPiCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.CatPiCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.CatPiCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.CatPiCalculator
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.CatPiCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
|
class ChargeCalculator(rosetta.core.pose.metrics.StructureDependentCalculator) |
| | |
- Method resolution order:
- ChargeCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(self : handle, special_region : rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t) -> NoneType
3. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.ChargeCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.ChargeCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.ChargeCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.ChargeCalculator
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.ChargeCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
|
class ClashCountCalculator(rosetta.core.pose.metrics.StructureDependentCalculator) |
| | |
- Method resolution order:
- ClashCountCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : handle, clash_threshold : float) -> NoneType
2. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.ClashCountCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.ClashCountCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.pose.metrics.StructureDependentCalculator, : rosetta.core.pose.metrics.StructureDependentCalculator) -> rosetta.core.pose.metrics.StructureDependentCalculator
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
|
class DecomposeAndReweightEnergiesCalculator(rosetta.core.pose.metrics.EnergyDependentCalculator) |
| | |
- Method resolution order:
- DecomposeAndReweightEnergiesCalculator
- rosetta.core.pose.metrics.EnergyDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : handle, NameOfResidueDecompositionCalculator : str) -> NoneType
2. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
- component(...) from builtins.PyCapsule
- component(self : rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator, index : int) -> rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData
- master_weight_vector(...) from builtins.PyCapsule
- master_weight_vector(*args, **kwargs)
Overloaded function.
1. master_weight_vector(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> rosetta.utility.vector1_double
2. master_weight_vector(self : rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator, master_weight_vector : rosetta.utility.vector1_double) -> NoneType
- names_vector(...) from builtins.PyCapsule
- names_vector(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> rosetta.utility.vector1_std_string
- nonzero_weight_score_types(...) from builtins.PyCapsule
- nonzero_weight_score_types(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> rosetta.utility.vector1_core_scoring_ScoreType
- num_components(...) from builtins.PyCapsule
- num_components(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> int
- num_sets(...) from builtins.PyCapsule
- num_sets(*args, **kwargs)
Overloaded function.
1. num_sets(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> int
2. num_sets(self : rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator, num_sets : int) -> NoneType
- onebody_energies(...) from builtins.PyCapsule
- onebody_energies(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> rosetta.utility.vector1_protocols_toolbox_pose_metric_calculators_EnergiesData
- original_weights(...) from builtins.PyCapsule
- original_weights(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> rosetta.core.scoring.EMapVector
- other_energies(...) from builtins.PyCapsule
- other_energies(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData
- residue_decomposition_calculator(...) from builtins.PyCapsule
- residue_decomposition_calculator(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> str
- set_names(...) from builtins.PyCapsule
- set_names(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> rosetta.utility.vector1_std_string
- twobody_energies(...) from builtins.PyCapsule
- twobody_energies(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> rosetta.core.graph.UpperEdgeGraph_protocols_toolbox_pose_metric_calculators_EmptyVertexData_protocols_toolbox_pose_metric_calculators_EnergiesData_t
- weighted_energy_map_vector(...) from builtins.PyCapsule
- weighted_energy_map_vector(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> rosetta.utility.vector1_core_scoring_EMapVector
- weighted_total(...) from builtins.PyCapsule
- weighted_total(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> float
- weighted_total_no_master_vector(...) from builtins.PyCapsule
- weighted_total_no_master_vector(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> rosetta.utility.vector1_double
- weighted_total_vector(...) from builtins.PyCapsule
- weighted_total_vector(rosetta.protocols.toolbox.pose_metric_calculators.DecomposeAndReweightEnergiesCalculator) -> rosetta.utility.vector1_double
Methods inherited from rosetta.core.pose.metrics.EnergyDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.EnergyDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.EnergyDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.EnergyDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
|
class EnergiesData(builtins.object) |
| | |
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData, : rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData) -> rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData
- energy_map(...) from builtins.PyCapsule
- energy_map(*args, **kwargs)
Overloaded function.
1. energy_map(rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData) -> rosetta.core.scoring.EMapVector
2. energy_map(rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData) -> rosetta.core.scoring.EMapVector
3. energy_map(self : rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData, energy_map : rosetta.core.scoring.EMapVector) -> NoneType
- master_weight(...) from builtins.PyCapsule
- master_weight(*args, **kwargs)
Overloaded function.
1. master_weight(rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData) -> float
2. master_weight(self : rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData, master_weight : float) -> NoneType
- use_original_weights(...) from builtins.PyCapsule
- use_original_weights(*args, **kwargs)
Overloaded function.
1. use_original_weights(rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData) -> bool
2. use_original_weights(self : rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData, use_original_weights : bool) -> NoneType
- weight_map(...) from builtins.PyCapsule
- weight_map(*args, **kwargs)
Overloaded function.
1. weight_map(rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData) -> rosetta.core.scoring.EMapVector
2. weight_map(rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData) -> rosetta.core.scoring.EMapVector
3. weight_map(self : rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData, weight_map : rosetta.core.scoring.EMapVector) -> NoneType
- weighted_energy_map(...) from builtins.PyCapsule
- weighted_energy_map(rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData) -> rosetta.core.scoring.EMapVector
- weighted_total(...) from builtins.PyCapsule
- weighted_total(rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData) -> float
- weighted_total_no_master(...) from builtins.PyCapsule
- weighted_total_no_master(rosetta.protocols.toolbox.pose_metric_calculators.EnergiesData) -> float
|
class FragQualCalculator(rosetta.core.pose.metrics.StructureDependentCalculator) |
| | |
- Method resolution order:
- FragQualCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(handle, rosetta.core.fragment.FragSet) -> NoneType
doc
3. __init__(handle, rosetta.core.fragment.FragSet, float) -> NoneType
doc
4. __init__(self : handle, frag : rosetta.core.fragment.FragSet, rmsd : float, ratio : float) -> NoneType
5. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.FragQualCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.FragQualCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.FragQualCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.FragQualCalculator
- begin(...) from builtins.PyCapsule
- begin(self : rosetta.protocols.toolbox.pose_metric_calculators.FragQualCalculator, begin : int) -> NoneType
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.FragQualCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
make clone
- end(...) from builtins.PyCapsule
- end(self : rosetta.protocols.toolbox.pose_metric_calculators.FragQualCalculator, end : int) -> NoneType
- ratio_cutoff(...) from builtins.PyCapsule
- ratio_cutoff(self : rosetta.protocols.toolbox.pose_metric_calculators.FragQualCalculator, val : float) -> NoneType
- rmsd_cutoff(...) from builtins.PyCapsule
- rmsd_cutoff(self : rosetta.protocols.toolbox.pose_metric_calculators.FragQualCalculator, val : float) -> NoneType
rmsd cutoff of good fragments
- set_fragset(...) from builtins.PyCapsule
- set_fragset(self : rosetta.protocols.toolbox.pose_metric_calculators.FragQualCalculator, frags : rosetta.core.fragment.FragSet) -> NoneType
set fragments
- set_region(...) from builtins.PyCapsule
- set_region(self : rosetta.protocols.toolbox.pose_metric_calculators.FragQualCalculator, val1 : int, val2 : int) -> NoneType
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
|
class HPatchCalculator(rosetta.core.pose.metrics.StructureDependentCalculator) |
| | |
- Method resolution order:
- HPatchCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
doc
2. __init__(self : handle, remove_nonprotein_res : bool) -> NoneType
3. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.HPatchCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.HPatchCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.HPatchCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.HPatchCalculator
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.HPatchCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
|
class InterGroupNeighborsCalculator(rosetta.core.pose.metrics.StructureDependentCalculator) |
| |
This is complicated, so pay attention. You define groups of residues within a protein (say, the N and C terminal domains). You then define which pairs of groups you are interested in. This calculator returns the union of the sets of residues at the interfaces between these domains/groups. Functionally it is intended for "interface design" at the non-chainbreak interface between domains of multidomain proteins. It contains a superset of the functionality of some of the other calculators (so I'll be obsoleting them, maybe?). The pose does NOT have to have been scored.
"groups" string returns the input groups; of type utility::vector1< std::pair< std::set< core::Size >, std::set< core::Size > > > (not a calculated value)
"dist_cutoff" returns the input cutoff distance for neighbor finding (not a calculated value)
"neighbors" returns a std::set<core::Size> of the neighbors calculated between the group pairs.
"num_neighbors" returns the size of the neighbors set.
|
| |
- Method resolution order:
- InterGroupNeighborsCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle, rosetta.utility.vector1_std_pair_std_set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_std_set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t) -> NoneType
doc
2. __init__(self : handle, groups : rosetta.utility.vector1_std_pair_std_set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_std_set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t, dist_cutoff : float) -> NoneType
3. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.InterGroupNeighborsCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.InterGroupNeighborsCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.InterGroupNeighborsCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.InterGroupNeighborsCalculator
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.InterGroupNeighborsCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
- dist_cutoff(...) from builtins.PyCapsule
- dist_cutoff(rosetta.protocols.toolbox.pose_metric_calculators.InterGroupNeighborsCalculator) -> float
return distance cutoff
- groups(...) from builtins.PyCapsule
- groups(rosetta.protocols.toolbox.pose_metric_calculators.InterGroupNeighborsCalculator) -> rosetta.utility.vector1_std_pair_std_set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_std_set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t
return groups
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
|
class MetricValueGetter(builtins.object) |
| | |
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.protocols.toolbox.pose_metric_calculators.MetricValueGetter) -> NoneType
2. __init__(self : rosetta.protocols.toolbox.pose_metric_calculators.MetricValueGetter, calculator : str, key : str, metric_value_template : rosetta.basic.MetricValueBase) -> NoneType
3. __init__(self : rosetta.protocols.toolbox.pose_metric_calculators.MetricValueGetter, getter : rosetta.protocols.toolbox.pose_metric_calculators.MetricValueGetter) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.MetricValueGetter, getter : rosetta.protocols.toolbox.pose_metric_calculators.MetricValueGetter) -> rosetta.protocols.toolbox.pose_metric_calculators.MetricValueGetter
- calculator(...) from builtins.PyCapsule
- calculator(*args, **kwargs)
Overloaded function.
1. calculator(rosetta.protocols.toolbox.pose_metric_calculators.MetricValueGetter) -> str
2. calculator(self : rosetta.protocols.toolbox.pose_metric_calculators.MetricValueGetter, calculatr : str) -> NoneType
- get(...) from builtins.PyCapsule
- get(self : rosetta.protocols.toolbox.pose_metric_calculators.MetricValueGetter, pose : rosetta.core.pose.Pose) -> rosetta.basic.MetricValueBase
- key(...) from builtins.PyCapsule
- key(*args, **kwargs)
Overloaded function.
1. key(rosetta.protocols.toolbox.pose_metric_calculators.MetricValueGetter) -> str
2. key(self : rosetta.protocols.toolbox.pose_metric_calculators.MetricValueGetter, key : str) -> NoneType
- metric_value_template(...) from builtins.PyCapsule
- metric_value_template(*args, **kwargs)
Overloaded function.
1. metric_value_template(rosetta.protocols.toolbox.pose_metric_calculators.MetricValueGetter) -> rosetta.basic.MetricValueBase
2. metric_value_template(self : rosetta.protocols.toolbox.pose_metric_calculators.MetricValueGetter, metric_value_template : rosetta.basic.MetricValueBase) -> NoneType
|
class NeighborhoodByDistanceCalculator(rosetta.core.pose.metrics.StructureDependentCalculator) |
| |
this calculator determines the number and resids of residues within X angstroms of a group of given residues. Its intended purpose is the backend for a TaskOperation that allows one to construct a PackerTask based on neighborhoods around a set of particular residues. It can return its set of central residues, the total count of their neighbors as determined by the sub-calculators (inclusive of the central residues), and the identities of those neighbors.
|
| |
- Method resolution order:
- NeighborhoodByDistanceCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : handle, central_residues : rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t) -> NoneType
2. __init__(self : handle, central_residues : rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t, dist_cutoff : float) -> NoneType
3. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.NeighborhoodByDistanceCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- central_residues(...) from builtins.PyCapsule
- central_residues(rosetta.protocols.toolbox.pose_metric_calculators.NeighborhoodByDistanceCalculator) -> rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t
return central residues set
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.NeighborhoodByDistanceCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
- dist_cutoff(...) from builtins.PyCapsule
- dist_cutoff(rosetta.protocols.toolbox.pose_metric_calculators.NeighborhoodByDistanceCalculator) -> float
return distance cutoff
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.pose.metrics.StructureDependentCalculator, : rosetta.core.pose.metrics.StructureDependentCalculator) -> rosetta.core.pose.metrics.StructureDependentCalculator
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
|
class NeighborsByDistanceCalculator(rosetta.core.pose.metrics.StructureDependentCalculator) |
| |
this calculator determines the number and resids of residues within X angstroms of the given residue. Its intended purpose is the backend for a TaskOperation that allows one to construct a PackerTask based on neighborhoods around a set of particular residues. (It combines with a NeighborhoodByDistanceCalculator for that purpose). It can return the identity of its seeded central residue and distance (just get functions) and calculate the neighbors and count of neighbors around that residue within that distance. It uses the PointGraph class to do this; if you have a better/faster implementation please code it up and replace this one. Note that returned data is INCLUSIVE of the central residue - it is part of the count and part of the std::set.
|
| |
- Method resolution order:
- NeighborsByDistanceCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle, int) -> NoneType
doc
2. __init__(self : handle, central_residue : int, dist_cutoff : float) -> NoneType
3. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.NeighborsByDistanceCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- central_residue(...) from builtins.PyCapsule
- central_residue(rosetta.protocols.toolbox.pose_metric_calculators.NeighborsByDistanceCalculator) -> int
return central residue
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.NeighborsByDistanceCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
- dist_cutoff(...) from builtins.PyCapsule
- dist_cutoff(rosetta.protocols.toolbox.pose_metric_calculators.NeighborsByDistanceCalculator) -> float
return distance cutoff
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.core.pose.metrics.StructureDependentCalculator, : rosetta.core.pose.metrics.StructureDependentCalculator) -> rosetta.core.pose.metrics.StructureDependentCalculator
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
|
class NonlocalContactsCalculator(rosetta.core.pose.metrics.EnergyDependentCalculator) |
| | |
- Method resolution order:
- NonlocalContactsCalculator
- rosetta.core.pose.metrics.EnergyDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
doc
2. __init__(handle, int) -> NoneType
doc
3. __init__(self : handle, min_sequence_separation : int, contact_cutoffE : float) -> NoneType
4. __init__(handle, rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t) -> NoneType
doc
5. __init__(handle, rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t, int) -> NoneType
doc
6. __init__(self : handle, special_region : rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t, min_sequence_separation : int, contact_cutoffE : float) -> NoneType
7. __init__(handle, rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t, rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t) -> NoneType
doc
8. __init__(handle, rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t, rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t, int) -> NoneType
doc
9. __init__(self : handle, special_region1 : rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t, special_region2 : rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t, min_sequence_separation : int, contact_cutoffE : float) -> NoneType
10. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.NonlocalContactsCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.NonlocalContactsCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.NonlocalContactsCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.NonlocalContactsCalculator
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.NonlocalContactsCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
Methods inherited from rosetta.core.pose.metrics.EnergyDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.EnergyDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.EnergyDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.EnergyDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
|
class NumberHBondsCalculator(rosetta.core.pose.metrics.EnergyDependentCalculator) |
| | |
- Method resolution order:
- NumberHBondsCalculator
- rosetta.core.pose.metrics.EnergyDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(self : handle, special_region : rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.NumberHBondsCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.NumberHBondsCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.NumberHBondsCalculator
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.NumberHBondsCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
- sum_Hbond_terms(...) from builtins.PyCapsule
- sum_Hbond_terms(emap : rosetta.core.scoring.EMapVector) -> float
Methods inherited from rosetta.core.pose.metrics.EnergyDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.EnergyDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.EnergyDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.EnergyDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
|
class PackstatCalculator(rosetta.core.pose.metrics.StructureDependentCalculator) |
| | |
- Method resolution order:
- PackstatCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
doc
2. __init__(handle, int) -> NoneType
doc
3. __init__(self : handle, oversample : int, remove_nonprotein_res : bool) -> NoneType
4. __init__(handle, rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t) -> NoneType
doc
5. __init__(handle, rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t, int) -> NoneType
doc
6. __init__(self : handle, special_region : rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t, oversample : int, remove_nonprotein_res : bool) -> NoneType
7. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.PackstatCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.PackstatCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.PackstatCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.PackstatCalculator
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.PackstatCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
|
class PiPiCalculator(rosetta.core.pose.metrics.StructureDependentCalculator) |
| | |
- Method resolution order:
- PiPiCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(self : handle, dist_cutoff : float) -> NoneType
3. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.PiPiCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.PiPiCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.PiPiCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.PiPiCalculator
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.PiPiCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
|
class ResidueDecompositionByChainCalculator(ResidueDecompositionCalculator) |
| | |
- Method resolution order:
- ResidueDecompositionByChainCalculator
- ResidueDecompositionCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.ResidueDecompositionByChainCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.ResidueDecompositionByChainCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.ResidueDecompositionByChainCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.ResidueDecompositionByChainCalculator
- chain_letters(...) from builtins.PyCapsule
- chain_letters(*args, **kwargs)
Overloaded function.
1. chain_letters(rosetta.protocols.toolbox.pose_metric_calculators.ResidueDecompositionByChainCalculator) -> rosetta.utility.vector1_std_set_char_std_less_char_std_allocator_char_t
2. chain_letters(self : rosetta.protocols.toolbox.pose_metric_calculators.ResidueDecompositionByChainCalculator, chain_letters : rosetta.utility.vector1_std_set_char_std_less_char_std_allocator_char_t) -> NoneType
- chain_numbers(...) from builtins.PyCapsule
- chain_numbers(*args, **kwargs)
Overloaded function.
1. chain_numbers(rosetta.protocols.toolbox.pose_metric_calculators.ResidueDecompositionByChainCalculator) -> rosetta.utility.vector1_std_set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t
2. chain_numbers(self : rosetta.protocols.toolbox.pose_metric_calculators.ResidueDecompositionByChainCalculator, chain_numbers : rosetta.utility.vector1_std_set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t) -> NoneType
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.ResidueDecompositionByChainCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
- use_numbers(...) from builtins.PyCapsule
- use_numbers(*args, **kwargs)
Overloaded function.
1. use_numbers(rosetta.protocols.toolbox.pose_metric_calculators.ResidueDecompositionByChainCalculator) -> bool
2. use_numbers(self : rosetta.protocols.toolbox.pose_metric_calculators.ResidueDecompositionByChainCalculator, use_numbers : bool) -> NoneType
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
|
class ResidueDecompositionCalculator(rosetta.core.pose.metrics.StructureDependentCalculator) |
| | |
- Method resolution order:
- ResidueDecompositionCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(self, /, *args, **kwargs)
- Initialize self. See help(type(self)) for accurate signature.
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.ResidueDecompositionCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.ResidueDecompositionCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.ResidueDecompositionCalculator
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.ResidueDecompositionCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
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class RotamerBoltzCalculator(rosetta.core.pose.metrics.StructureDependentCalculator) |
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- Method resolution order:
- RotamerBoltzCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle, rosetta.core.scoring.ScoreFunction, float) -> NoneType
doc
2. __init__(self : handle, scorefxn : rosetta.core.scoring.ScoreFunction, temp : float, repacking_radius : float) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.RotamerBoltzCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.RotamerBoltzCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.RotamerBoltzCalculator
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.RotamerBoltzCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
- computeAllBoltz(...) from builtins.PyCapsule
- computeAllBoltz(self : rosetta.protocols.toolbox.pose_metric_calculators.RotamerBoltzCalculator, pose : rosetta.core.pose.Pose) -> NoneType
- computeBoltzWeight(...) from builtins.PyCapsule
- computeBoltzWeight(self : rosetta.protocols.toolbox.pose_metric_calculators.RotamerBoltzCalculator, pose : rosetta.core.pose.Pose, resi : int) -> float
- set_energy_landscape_evaluator(...) from builtins.PyCapsule
- set_energy_landscape_evaluator(self : rosetta.protocols.toolbox.pose_metric_calculators.RotamerBoltzCalculator, evaluator : protocols::toolbox::EnergyLandscapeEvaluator) -> NoneType
- set_lazy(...) from builtins.PyCapsule
- set_lazy(self : rosetta.protocols.toolbox.pose_metric_calculators.RotamerBoltzCalculator, lazy : bool) -> NoneType
- set_residue_selector(...) from builtins.PyCapsule
- set_residue_selector(self : rosetta.protocols.toolbox.pose_metric_calculators.RotamerBoltzCalculator, selector : rosetta.core.select.residue_selector.ResidueSelector) -> NoneType
- set_scorefxn(...) from builtins.PyCapsule
- set_scorefxn(self : rosetta.protocols.toolbox.pose_metric_calculators.RotamerBoltzCalculator, scorefxn : rosetta.core.scoring.ScoreFunction) -> NoneType
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
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class RotamerRecovery(builtins.object) |
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(rosetta.protocols.toolbox.pose_metric_calculators.RotamerRecovery) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- bb_bins_from_pose(...) from builtins.PyCapsule
- bb_bins_from_pose(self : rosetta.protocols.toolbox.pose_metric_calculators.RotamerRecovery, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_char
- chis_from_pose(...) from builtins.PyCapsule
- chis_from_pose(self : rosetta.protocols.toolbox.pose_metric_calculators.RotamerRecovery, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_utility_vector1_double_std_allocator_double_t
- get_rotamer_recovery(...) from builtins.PyCapsule
- get_rotamer_recovery(*args, **kwargs)
Overloaded function.
1. get_rotamer_recovery(self : rosetta.protocols.toolbox.pose_metric_calculators.RotamerRecovery, native : rosetta.core.pose.Pose, compared_poses : rosetta.utility.vector1_core_pose_Pose) -> NoneType
2. get_rotamer_recovery(self : rosetta.protocols.toolbox.pose_metric_calculators.RotamerRecovery, native : rosetta.core.pose.Pose, compared_pose : rosetta.core.pose.Pose) -> NoneType
- get_ss(...) from builtins.PyCapsule
- get_ss(self : rosetta.protocols.toolbox.pose_metric_calculators.RotamerRecovery, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_char
- rots_from_pose(...) from builtins.PyCapsule
- rots_from_pose(self : rosetta.protocols.toolbox.pose_metric_calculators.RotamerRecovery, pose : rosetta.core.pose.Pose) -> rosetta.utility.vector1_utility_vector1_unsigned_long_std_allocator_unsigned_long_t
- torsion2big_bin(...) from builtins.PyCapsule
- torsion2big_bin(self : rosetta.protocols.toolbox.pose_metric_calculators.RotamerRecovery, phi : float, psi : float, omega : float) -> str
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class SHOBuriedUnsatisfiedPolarsCalculator(rosetta.core.pose.metrics.StructureDependentCalculator) |
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- Method resolution order:
- SHOBuriedUnsatisfiedPolarsCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : handle, sho_cutoff : float, tgt_amino : str, tgt_atom : str, sfxn : rosetta.core.scoring.ScoreFunction) -> NoneType
2. __init__(self : handle, sho_cutoff : float, tgt_res_idxs : rosetta.utility.vector1_unsigned_long, sfxn : rosetta.core.scoring.ScoreFunction) -> NoneType
3. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.SHOBuriedUnsatisfiedPolarsCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.SHOBuriedUnsatisfiedPolarsCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.SHOBuriedUnsatisfiedPolarsCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.SHOBuriedUnsatisfiedPolarsCalculator
- burunsat_atoms(...) from builtins.PyCapsule
- burunsat_atoms(rosetta.protocols.toolbox.pose_metric_calculators.SHOBuriedUnsatisfiedPolarsCalculator) -> rosetta.utility.vector1_core_id_AtomID
returns the set of target atoms classified as "buried unsatisfied"
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.SHOBuriedUnsatisfiedPolarsCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
clones this calculator
- hbond_energy(...) from builtins.PyCapsule
- hbond_energy(self : rosetta.protocols.toolbox.pose_metric_calculators.SHOBuriedUnsatisfiedPolarsCalculator, aid : rosetta.core.id.AtomID, ps : rosetta.core.pose.Pose) -> float
returns the total H-bond energy of an atom
- other_atoms(...) from builtins.PyCapsule
- other_atoms(rosetta.protocols.toolbox.pose_metric_calculators.SHOBuriedUnsatisfiedPolarsCalculator) -> rosetta.utility.vector1_core_id_AtomID
returns the set of target atoms classified as "other"
- print_all_info(...) from builtins.PyCapsule
- print_all_info(self : rosetta.protocols.toolbox.pose_metric_calculators.SHOBuriedUnsatisfiedPolarsCalculator, ps : rosetta.core.pose.Pose) -> NoneType
prints all information in this calculator
- recompute_and_print(...) from builtins.PyCapsule
- recompute_and_print(self : rosetta.protocols.toolbox.pose_metric_calculators.SHOBuriedUnsatisfiedPolarsCalculator, ps : rosetta.core.pose.Pose) -> NoneType
recomputes all data from scratch and prints it to screen
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
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class SaltBridgeCalculator(rosetta.core.pose.metrics.StructureDependentCalculator) |
| | |
- Method resolution order:
- SaltBridgeCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(self : handle, dist_cutoff : float) -> NoneType
3. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.SaltBridgeCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.SaltBridgeCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.SaltBridgeCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.SaltBridgeCalculator
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.SaltBridgeCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
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class SemiExplicitWaterUnsatisfiedPolarsCalculator(rosetta.core.pose.metrics.EnergyDependentCalculator) |
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- Method resolution order:
- SemiExplicitWaterUnsatisfiedPolarsCalculator
- rosetta.core.pose.metrics.EnergyDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle, str, rosetta.core.scoring.ScoreFunction) -> NoneType
doc
2. __init__(self : handle, hbond_calc : str, scorefxn : rosetta.core.scoring.ScoreFunction, semiexpl_water_cutoff : float) -> NoneType
3. __init__(handle, str, rosetta.core.scoring.ScoreFunction, rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t) -> NoneType
doc
4. __init__(self : handle, hbond_calc : str, scorefxn : rosetta.core.scoring.ScoreFunction, special_region : rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t, semiexpl_water_cutoff : float) -> NoneType
5. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.SemiExplicitWaterUnsatisfiedPolarsCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.SemiExplicitWaterUnsatisfiedPolarsCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.SemiExplicitWaterUnsatisfiedPolarsCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.SemiExplicitWaterUnsatisfiedPolarsCalculator
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.SemiExplicitWaterUnsatisfiedPolarsCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
- name_of_hbond_calc(...) from builtins.PyCapsule
- name_of_hbond_calc(rosetta.protocols.toolbox.pose_metric_calculators.SemiExplicitWaterUnsatisfiedPolarsCalculator) -> str
- semiexpl_water_hbgeom_score(...) from builtins.PyCapsule
- semiexpl_water_hbgeom_score(self : rosetta.protocols.toolbox.pose_metric_calculators.SemiExplicitWaterUnsatisfiedPolarsCalculator, pose : rosetta.core.pose.Pose, scorefxn : rosetta.core.scoring.ScoreFunction, seqpos : int, atomno : int, new_rsd : rosetta.core.conformation.Residue, new_atomno : int) -> float
Methods inherited from rosetta.core.pose.metrics.EnergyDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.EnergyDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.EnergyDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.EnergyDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
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class SequenceComparison(builtins.object) |
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : rosetta.protocols.toolbox.pose_metric_calculators.SequenceComparison, surface : int, core : int) -> NoneType
2. __init__(rosetta.protocols.toolbox.pose_metric_calculators.SequenceComparison) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- fill_designable_set(...) from builtins.PyCapsule
- fill_designable_set(self : rosetta.protocols.toolbox.pose_metric_calculators.SequenceComparison, pose : rosetta.core.pose.Pose, tf : rosetta.core.pack.task.TaskFactory) -> rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t
- fill_num_neighbors(...) from builtins.PyCapsule
- fill_num_neighbors(self : rosetta.protocols.toolbox.pose_metric_calculators.SequenceComparison, pose : rosetta.core.pose.Pose, num_nbs : rosetta.utility.vector1_unsigned_long) -> NoneType
- get_sequence_recovery(...) from builtins.PyCapsule
- get_sequence_recovery(*args, **kwargs)
Overloaded function.
1. get_sequence_recovery(self : rosetta.protocols.toolbox.pose_metric_calculators.SequenceComparison, native_poses : rosetta.utility.vector1_core_pose_Pose, redesign_poses : rosetta.utility.vector1_core_pose_Pose) -> NoneType
main function that is called. calls measure_sequence_recovery
2. get_sequence_recovery(self : rosetta.protocols.toolbox.pose_metric_calculators.SequenceComparison, native : rosetta.core.pose.Pose, designed : rosetta.core.pose.Pose) -> NoneType
overflowed main function to compare only two proteins
- measure_sequence_recovery(...) from builtins.PyCapsule
- measure_sequence_recovery(self : rosetta.protocols.toolbox.pose_metric_calculators.SequenceComparison, native_poses : rosetta.utility.vector1_core_pose_Pose, redesign_poses : rosetta.utility.vector1_core_pose_Pose) -> NoneType
measures the sequence recovery of a list of native proteins and a list of designed proteins. Outputs files to sequencerecovery.txt
- setup_tf(...) from builtins.PyCapsule
- setup_tf(self : rosetta.protocols.toolbox.pose_metric_calculators.SequenceComparison, task_factory_ : rosetta.core.pack.task.TaskFactory) -> rosetta.core.pack.task.TaskFactory
sets up the task factory used for determing what the neighbor counts...what is on the surface and what is in the core
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class SurfaceCalculator(rosetta.core.pose.metrics.StructureDependentCalculator) |
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- Method resolution order:
- SurfaceCalculator
- rosetta.core.pose.metrics.StructureDependentCalculator
- rosetta.core.pose.metrics.PoseMetricCalculator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
doc
2. __init__(self : handle, remove_nonprotein_res : bool) -> NoneType
3. __init__(handle, rosetta.protocols.toolbox.pose_metric_calculators.SurfaceCalculator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.toolbox.pose_metric_calculators.SurfaceCalculator, : rosetta.protocols.toolbox.pose_metric_calculators.SurfaceCalculator) -> rosetta.protocols.toolbox.pose_metric_calculators.SurfaceCalculator
- clone(...) from builtins.PyCapsule
- clone(rosetta.protocols.toolbox.pose_metric_calculators.SurfaceCalculator) -> rosetta.core.pose.metrics.PoseMetricCalculator
Methods inherited from rosetta.core.pose.metrics.StructureDependentCalculator:
- get(...) from builtins.PyCapsule
- get(*args, **kwargs)
Overloaded function.
1. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, val : rosetta.basic.MetricValueBase, this_pose : rosetta.core.pose.Pose) -> NoneType
2. get(self : rosetta.core.pose.metrics.StructureDependentCalculator, key : str, this_pose : rosetta.core.pose.Pose) -> str
- notify_structure_change(...) from builtins.PyCapsule
- notify_structure_change(rosetta.core.pose.metrics.StructureDependentCalculator) -> NoneType
Methods inherited from rosetta.core.pose.metrics.PoseMetricCalculator:
- notify_energy_change(...) from builtins.PyCapsule
- notify_energy_change(rosetta.core.pose.metrics.PoseMetricCalculator) -> NoneType
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