| |
- builtins.object
-
- StepWiseScreener
-
- AlignRMSD_Screener
- AnchorSugarScreener
- BaseBinMapUpdater
- BaseCentroidScreener
- BulgeApplier
- CentroidDistanceScreener
- FastForwardToNextResidueAlternative
- FastForwardToNextRigidBody
- IntegrationTestBreaker
- PartitionContactScreener
- PoseSelectionScreener
- ResidueContactScreener
- SampleApplier
-
- O2PrimeScreener
- PackScreener
- PhosphateScreener
- ProteinCCD_ClosureScreener
- RNA_ChainClosureScreener
- SugarInstantiator
- Scorer
- StepWiseResiduePairScreener
-
- RNA_ChainClosableGeometryResidueBasedScreener
- RNA_ChainClosableGeometryScreener
- RNA_ChainClosableGeometryStubBasedScreener
- StubApplier
- StubDistanceScreener
- TagDefinition
- VDW_BinScreener
- StepWiseScreenerType
class AlignRMSD_Screener(StepWiseScreener) |
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- Method resolution order:
- AlignRMSD_Screener
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle, rosetta.core.pose.Pose, rosetta.core.pose.Pose, rosetta.utility.vector1_unsigned_long, float) -> NoneType
doc
2. __init__(self : handle, align_pose : rosetta.core.pose.Pose, screening_pose : rosetta.core.pose.Pose, moving_res_list_ : rosetta.utility.vector1_unsigned_long, rmsd_cutoff : float, do_screen : bool) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.AlignRMSD_Screener) -> bool
- do_screen(...) from builtins.PyCapsule
- do_screen(rosetta.protocols.stepwise.screener.AlignRMSD_Screener) -> bool
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.AlignRMSD_Screener) -> str
- pass_count(...) from builtins.PyCapsule
- pass_count(rosetta.protocols.stepwise.screener.AlignRMSD_Screener) -> int
- set_do_screen(...) from builtins.PyCapsule
- set_do_screen(self : rosetta.protocols.stepwise.screener.AlignRMSD_Screener, setting : bool) -> NoneType
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.AlignRMSD_Screener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class AnchorSugarScreener(StepWiseScreener) |
| |
- Method resolution order:
- AnchorSugarScreener
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : handle, anchor_sugar_modeling : rosetta.protocols.stepwise.modeler.rna.sugar.SugarModeling, chain_closable_geometry_to_anchor_checker : rosetta.protocols.stepwise.modeler.rna.checker.RNA_ChainClosableGeometryChecker, sugar_screening_pose : rosetta.core.pose.Pose, is_prepend : bool, atr_rep_checker_with_instantiated_sugar : rosetta.protocols.stepwise.modeler.rna.checker.RNA_AtrRepChecker, atr_rep_checkers_for_anchor_sugar_models : rosetta.utility.vector1_std_shared_ptr_protocols_stepwise_modeler_rna_checker_RNA_AtrRepChecker_t, tag_definition : protocols::stepwise::screener::TagDefinition) -> NoneType
2. __init__(handle, rosetta.protocols.stepwise.screener.AnchorSugarScreener) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.AnchorSugarScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- anchor_sugar_solution_number(...) from builtins.PyCapsule
- anchor_sugar_solution_number(rosetta.protocols.stepwise.screener.AnchorSugarScreener) -> int
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.AnchorSugarScreener) -> bool
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.AnchorSugarScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.AnchorSugarScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class BaseBinMapUpdater(StepWiseScreener) |
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- Method resolution order:
- BaseBinMapUpdater
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, base_bin_map : rosetta.std.map_protocols_stepwise_modeler_rna_rigid_body_BaseBin_int) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.BaseBinMapUpdater, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.BaseBinMapUpdater) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.BaseBinMapUpdater) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.StepWiseScreener) -> bool
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class BaseCentroidScreener(StepWiseScreener) |
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- Method resolution order:
- BaseCentroidScreener
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle, rosetta.protocols.stepwise.modeler.rna.checker.RNA_BaseCentroidChecker, rosetta.core.pose.Pose) -> NoneType
doc
2. __init__(self : handle, base_centroid_checker : rosetta.protocols.stepwise.modeler.rna.checker.RNA_BaseCentroidChecker, screening_pose : rosetta.core.pose.Pose, force_centroid_interaction : bool) -> NoneType
3. __init__(self : handle, base_centroid_checker : rosetta.protocols.stepwise.modeler.rna.checker.RNA_BaseCentroidChecker, moving_res_base_stub : rosetta.core.kinematics.Stub) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.BaseCentroidScreener) -> bool
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.BaseCentroidScreener, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.BaseCentroidScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.BaseCentroidScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class BulgeApplier(StepWiseScreener) |
| |
- Method resolution order:
- BulgeApplier
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, atr_rep_checker : rosetta.protocols.stepwise.modeler.rna.checker.RNA_AtrRepChecker, base_centroid_checker : rosetta.protocols.stepwise.modeler.rna.checker.RNA_BaseCentroidChecker, moving_res : int) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.BulgeApplier, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.BulgeApplier, : rosetta.protocols.stepwise.screener.BulgeApplier) -> rosetta.protocols.stepwise.screener.BulgeApplier
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.BulgeApplier) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.BulgeApplier) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.StepWiseScreener) -> bool
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class CentroidDistanceScreener(StepWiseScreener) |
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- Method resolution order:
- CentroidDistanceScreener
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, screening_pose : rosetta.core.pose.Pose, moving_res : int, reference_centroid : rosetta.numeric.xyzVector_double_t, max_distance_squared : float) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.CentroidDistanceScreener) -> bool
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.CentroidDistanceScreener, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.CentroidDistanceScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.CentroidDistanceScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class FastForwardToNextResidueAlternative(StepWiseScreener) |
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- Method resolution order:
- FastForwardToNextResidueAlternative
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, moving_res : int) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.FastForwardToNextResidueAlternative, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.FastForwardToNextResidueAlternative) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.FastForwardToNextResidueAlternative) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.StepWiseScreener) -> bool
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class FastForwardToNextRigidBody(StepWiseScreener) |
| |
- Method resolution order:
- FastForwardToNextRigidBody
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(handle) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.FastForwardToNextRigidBody, : rosetta.protocols.stepwise.screener.FastForwardToNextRigidBody) -> rosetta.protocols.stepwise.screener.FastForwardToNextRigidBody
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.FastForwardToNextRigidBody, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.FastForwardToNextRigidBody) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.FastForwardToNextRigidBody) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.StepWiseScreener) -> bool
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class IntegrationTestBreaker(StepWiseScreener) |
| |
- Method resolution order:
- IntegrationTestBreaker
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, screener_whose_counts_to_check : rosetta.protocols.stepwise.screener.StepWiseScreener, final_screener : rosetta.protocols.stepwise.screener.StepWiseScreener, align_rmsd_screener : rosetta.protocols.stepwise.screener.AlignRMSD_Screener) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.IntegrationTestBreaker, : rosetta.protocols.stepwise.screener.IntegrationTestBreaker) -> rosetta.protocols.stepwise.screener.IntegrationTestBreaker
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.IntegrationTestBreaker) -> bool
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.IntegrationTestBreaker, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.IntegrationTestBreaker) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.IntegrationTestBreaker) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class O2PrimeScreener(SampleApplier) |
| |
- Method resolution order:
- O2PrimeScreener
- SampleApplier
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, o2prime_packer : rosetta.protocols.stepwise.modeler.rna.o2prime.O2PrimePacker) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.O2PrimeScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.O2PrimeScreener) -> bool
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.O2PrimeScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.O2PrimeScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from SampleApplier:
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.SampleApplier, mover : rosetta.protocols.moves.CompositionMover, i : int, j : int) -> NoneType
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.SampleApplier, sampler : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- pose(...) from builtins.PyCapsule
- pose(rosetta.protocols.stepwise.screener.SampleApplier) -> rosetta.core.pose.Pose
- set_apply_residue_alternative_sampler_(...) from builtins.PyCapsule
- set_apply_residue_alternative_sampler_(self : rosetta.protocols.stepwise.screener.SampleApplier, setting : bool) -> NoneType
Methods inherited from StepWiseScreener:
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class PackScreener(SampleApplier) |
| |
- Method resolution order:
- PackScreener
- SampleApplier
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, pose : rosetta.core.pose.Pose, stepwise_packer : rosetta.protocols.stepwise.modeler.packer.StepWisePacker) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.PackScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.PackScreener) -> bool
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.PackScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.PackScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from SampleApplier:
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.SampleApplier, mover : rosetta.protocols.moves.CompositionMover, i : int, j : int) -> NoneType
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.SampleApplier, sampler : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- pose(...) from builtins.PyCapsule
- pose(rosetta.protocols.stepwise.screener.SampleApplier) -> rosetta.core.pose.Pose
- set_apply_residue_alternative_sampler_(...) from builtins.PyCapsule
- set_apply_residue_alternative_sampler_(self : rosetta.protocols.stepwise.screener.SampleApplier, setting : bool) -> NoneType
Methods inherited from StepWiseScreener:
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class PartitionContactScreener(StepWiseScreener) |
| |
- Method resolution order:
- PartitionContactScreener
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, pose : rosetta.core.pose.Pose, working_parameters : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, use_loose_rep_cutoff : bool, options : rosetta.core.scoring.methods.EnergyMethodOptions) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.PartitionContactScreener) -> bool
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.PartitionContactScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.PartitionContactScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class PhosphateScreener(SampleApplier) |
| |
- Method resolution order:
- PhosphateScreener
- SampleApplier
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, phosphate_sampler : rosetta.protocols.stepwise.modeler.rna.phosphate.MultiPhosphateSampler) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.PhosphateScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.PhosphateScreener) -> bool
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.PhosphateScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.PhosphateScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from SampleApplier:
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.SampleApplier, mover : rosetta.protocols.moves.CompositionMover, i : int, j : int) -> NoneType
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.SampleApplier, sampler : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- pose(...) from builtins.PyCapsule
- pose(rosetta.protocols.stepwise.screener.SampleApplier) -> rosetta.core.pose.Pose
- set_apply_residue_alternative_sampler_(...) from builtins.PyCapsule
- set_apply_residue_alternative_sampler_(self : rosetta.protocols.stepwise.screener.SampleApplier, setting : bool) -> NoneType
Methods inherited from StepWiseScreener:
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class PoseSelectionScreener(StepWiseScreener) |
| |
- Method resolution order:
- PoseSelectionScreener
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, pose : rosetta.core.pose.Pose, scorefxn : rosetta.core.scoring.ScoreFunction, stepwise_clusterer : rosetta.protocols.stepwise.modeler.align.StepWiseClusterer) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.PoseSelectionScreener) -> bool
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.PoseSelectionScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.PoseSelectionScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class ProteinCCD_ClosureScreener(SampleApplier) |
| |
- Method resolution order:
- ProteinCCD_ClosureScreener
- SampleApplier
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, ccd_closer : rosetta.protocols.stepwise.modeler.protein.loop_close.StepWiseProteinCCD_Closer, screening_pose : rosetta.core.pose.Pose) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.ProteinCCD_ClosureScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.ProteinCCD_ClosureScreener) -> bool
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.ProteinCCD_ClosureScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.ProteinCCD_ClosureScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from SampleApplier:
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.SampleApplier, mover : rosetta.protocols.moves.CompositionMover, i : int, j : int) -> NoneType
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.SampleApplier, sampler : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- pose(...) from builtins.PyCapsule
- pose(rosetta.protocols.stepwise.screener.SampleApplier) -> rosetta.core.pose.Pose
- set_apply_residue_alternative_sampler_(...) from builtins.PyCapsule
- set_apply_residue_alternative_sampler_(self : rosetta.protocols.stepwise.screener.SampleApplier, setting : bool) -> NoneType
Methods inherited from StepWiseScreener:
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class RNA_ChainClosableGeometryResidueBasedScreener(StepWiseResiduePairScreener) |
| |
- Method resolution order:
- RNA_ChainClosableGeometryResidueBasedScreener
- StepWiseResiduePairScreener
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, chain_closable_geometry_checker : rosetta.protocols.stepwise.modeler.rna.checker.RNA_ChainClosableGeometryChecker) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.RNA_ChainClosableGeometryResidueBasedScreener) -> bool
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.RNA_ChainClosableGeometryResidueBasedScreener, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.RNA_ChainClosableGeometryResidueBasedScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.RNA_ChainClosableGeometryResidueBasedScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseResiduePairScreener:
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseResiduePairScreener, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class RNA_ChainClosableGeometryScreener(StepWiseResiduePairScreener) |
| |
- Method resolution order:
- RNA_ChainClosableGeometryScreener
- StepWiseResiduePairScreener
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle, rosetta.protocols.stepwise.modeler.rna.checker.RNA_ChainClosableGeometryChecker, rosetta.core.pose.Pose) -> NoneType
doc
2. __init__(self : handle, chain_closable_geometry_checker : rosetta.protocols.stepwise.modeler.rna.checker.RNA_ChainClosableGeometryChecker, screening_pose : rosetta.core.pose.Pose, finer_sampling_at_chain_closure : bool) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.RNA_ChainClosableGeometryScreener) -> bool
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.RNA_ChainClosableGeometryScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.RNA_ChainClosableGeometryScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseResiduePairScreener:
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseResiduePairScreener, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class RNA_ChainClosableGeometryStubBasedScreener(StepWiseResiduePairScreener) |
| |
- Method resolution order:
- RNA_ChainClosableGeometryStubBasedScreener
- StepWiseResiduePairScreener
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle, rosetta.protocols.stepwise.modeler.rna.checker.RNA_ChainClosableGeometryChecker, rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t, rosetta.core.kinematics.Stub, int, rosetta.utility.vector1_std_shared_ptr_core_conformation_Residue_t) -> NoneType
doc
2. __init__(self : handle, chain_closable_geometry_checker : rosetta.protocols.stepwise.modeler.rna.checker.RNA_ChainClosableGeometryChecker, screening_pose_list : rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t, moving_res_base_stub : rosetta.core.kinematics.Stub, reference_res : int, moving_rsd_at_origin_list : rosetta.utility.vector1_std_shared_ptr_core_conformation_Residue_t, using_predefined_moving_rsd_list : bool) -> NoneType
3. __init__(self : handle, chain_closable_geometry_checker : rosetta.protocols.stepwise.modeler.rna.checker.RNA_ChainClosableGeometryChecker, screening_pose_list : rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t, moving_res_base_stub : rosetta.core.kinematics.Stub, chain_break_reference_res : int) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.RNA_ChainClosableGeometryStubBasedScreener) -> bool
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.RNA_ChainClosableGeometryStubBasedScreener, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.RNA_ChainClosableGeometryStubBasedScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.RNA_ChainClosableGeometryStubBasedScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseResiduePairScreener:
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseResiduePairScreener, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class RNA_ChainClosureScreener(SampleApplier) |
| |
- Method resolution order:
- RNA_ChainClosureScreener
- SampleApplier
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle, rosetta.protocols.stepwise.modeler.rna.checker.RNA_ChainClosureChecker, rosetta.core.pose.Pose) -> NoneType
doc
2. __init__(self : handle, chain_closure_checker : rosetta.protocols.stepwise.modeler.rna.checker.RNA_ChainClosureChecker, screening_pose : rosetta.core.pose.Pose, just_do_closure_check : bool) -> NoneType
3. __init__(self : handle, chain_closure_checker : rosetta.protocols.stepwise.modeler.rna.checker.RNA_ChainClosureChecker) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.RNA_ChainClosureScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.RNA_ChainClosureScreener) -> bool
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.RNA_ChainClosureScreener, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.RNA_ChainClosureScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.RNA_ChainClosureScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from SampleApplier:
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.SampleApplier, mover : rosetta.protocols.moves.CompositionMover, i : int, j : int) -> NoneType
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.SampleApplier, sampler : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- pose(...) from builtins.PyCapsule
- pose(rosetta.protocols.stepwise.screener.SampleApplier) -> rosetta.core.pose.Pose
- set_apply_residue_alternative_sampler_(...) from builtins.PyCapsule
- set_apply_residue_alternative_sampler_(self : rosetta.protocols.stepwise.screener.SampleApplier, setting : bool) -> NoneType
Methods inherited from StepWiseScreener:
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class ResidueContactScreener(StepWiseScreener) |
| |
- Method resolution order:
- ResidueContactScreener
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, screening_pose : rosetta.core.pose.Pose, last_append_res : int, last_prepend_res : int, atom_atom_overlap_dist_cutoff : float) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.ResidueContactScreener) -> bool
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.ResidueContactScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.ResidueContactScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class SampleApplier(StepWiseScreener) |
| |
- Method resolution order:
- SampleApplier
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(handle, rosetta.core.pose.Pose) -> NoneType
doc
3. __init__(self : handle, pose : rosetta.core.pose.Pose, apply_residue_alternative_sampler : bool) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.SampleApplier, mover : rosetta.protocols.moves.CompositionMover, i : int, j : int) -> NoneType
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.SampleApplier) -> bool
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.SampleApplier, sampler : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.SampleApplier) -> str
- pose(...) from builtins.PyCapsule
- pose(rosetta.protocols.stepwise.screener.SampleApplier) -> rosetta.core.pose.Pose
- set_apply_residue_alternative_sampler_(...) from builtins.PyCapsule
- set_apply_residue_alternative_sampler_(self : rosetta.protocols.stepwise.screener.SampleApplier, setting : bool) -> NoneType
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.SampleApplier) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class Scorer(StepWiseScreener) |
| |
- Method resolution order:
- Scorer
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle) -> NoneType
2. __init__(self : handle, pose : rosetta.core.pose.Pose, scorefxn : rosetta.core.scoring.ScoreFunction) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.Scorer) -> bool
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.Scorer) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.Scorer) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class StepWiseResiduePairScreener(StepWiseScreener) |
| |
- Method resolution order:
- StepWiseResiduePairScreener
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : rosetta.protocols.stepwise.screener.StepWiseResiduePairScreener, res1 : int, res2 : int) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseResiduePairScreener, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.StepWiseResiduePairScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.StepWiseResiduePairScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.StepWiseScreener) -> bool
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
|
class StepWiseScreener(builtins.object) |
| |
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
2. __init__(rosetta.protocols.stepwise.screener.StepWiseScreener, rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.StepWiseScreener) -> bool
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.StepWiseScreener) -> str
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
|
class StepWiseScreenerType(builtins.object) |
| |
Methods defined here:
- __eq__(...) from builtins.PyCapsule
- __eq__(rosetta.protocols.stepwise.screener.StepWiseScreenerType, rosetta.protocols.stepwise.screener.StepWiseScreenerType) -> bool
- __hash__(...) from builtins.PyCapsule
- __hash__(rosetta.protocols.stepwise.screener.StepWiseScreenerType) -> int
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.protocols.stepwise.screener.StepWiseScreenerType, int) -> NoneType
2. __init__(rosetta.protocols.stepwise.screener.StepWiseScreenerType, int) -> NoneType
- __int__(...) from builtins.PyCapsule
- __int__(rosetta.protocols.stepwise.screener.StepWiseScreenerType) -> int
- __ne__(...) from builtins.PyCapsule
- __ne__(rosetta.protocols.stepwise.screener.StepWiseScreenerType, rosetta.protocols.stepwise.screener.StepWiseScreenerType) -> bool
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- __repr__(...) from builtins.PyCapsule
- __repr__(rosetta.protocols.stepwise.screener.StepWiseScreenerType) -> str
Data and other attributes defined here:
- ALIGN_RMSD = StepWiseScreenerType.ALIGN_RMSD
- ANCHOR_SUGAR = StepWiseScreenerType.ANCHOR_SUGAR
- ATR_REP = StepWiseScreenerType.ATR_REP
- BASE_BIN_MAP = StepWiseScreenerType.BASE_BIN_MAP
- BASE_CENTROID = StepWiseScreenerType.BASE_CENTROID
- BULGE_APPLIER = StepWiseScreenerType.BULGE_APPLIER
- CENTROID_DISTANCE = StepWiseScreenerType.CENTROID_DISTANCE
- FAST_FORWARD_TO_NEXT_RESIDUE_ALTERNATIVE = StepWiseScreenerType.FAST_FORWARD_TO_NEXT_RESIDUE_ALTERNATIVE
- FAST_FORWARD_TO_NEXT_RIGID_BODY = StepWiseScreenerType.FAST_FORWARD_TO_NEXT_RIGID_BODY
- INTEGRATION_TEST = StepWiseScreenerType.INTEGRATION_TEST
- NONE = StepWiseScreenerType.NONE
- O2PRIME_PACK = StepWiseScreenerType.O2PRIME_PACK
- PACK = StepWiseScreenerType.PACK
- PARTITION_CONTACT = StepWiseScreenerType.PARTITION_CONTACT
- PHOSPHATE_PACK = StepWiseScreenerType.PHOSPHATE_PACK
- POSE_SELECTION = StepWiseScreenerType.POSE_SELECTION
- PROTEIN_ATR_REP = StepWiseScreenerType.PROTEIN_ATR_REP
- PROTEIN_CCD_CLOSURE = StepWiseScreenerType.PROTEIN_CCD_CLOSURE
- RESIDUE_APPLIER = StepWiseScreenerType.RESIDUE_APPLIER
- RESIDUE_CONTACT = StepWiseScreenerType.RESIDUE_CONTACT
- RNA_CHAIN_CLOSABLE_GEOMETRY = StepWiseScreenerType.RNA_CHAIN_CLOSABLE_GEOMETRY
- RNA_CHAIN_CLOSABLE_GEOMETRY_RESIDUE_BASED = StepWiseScreenerType.RNA_CHAIN_CLOSABLE_GEOMETRY_RESIDUE_BASED
- RNA_CHAIN_CLOSABLE_GEOMETRY_STUB_BASED = StepWiseScreenerType.RNA_CHAIN_CLOSABLE_GEOMETRY_STUB_BASED
- RNA_CHAIN_CLOSURE = StepWiseScreenerType.RNA_CHAIN_CLOSURE
- SAMPLE_APPLIER = StepWiseScreenerType.SAMPLE_APPLIER
- SAMPLE_APPLIER_WITH_RESIDUE_LIST = StepWiseScreenerType.SAMPLE_APPLIER_WITH_RESIDUE_LIST
- SCORER = StepWiseScreenerType.SCORER
- SIMPLE_POSE_SELECTION = StepWiseScreenerType.SIMPLE_POSE_SELECTION
- SIMPLE_RMSD = StepWiseScreenerType.SIMPLE_RMSD
- STUB_APPLIER = StepWiseScreenerType.STUB_APPLIER
- STUB_DISTANCE = StepWiseScreenerType.STUB_DISTANCE
- SUGAR_INSTANTIATOR = StepWiseScreenerType.SUGAR_INSTANTIATOR
- TAG_DEFINITION = StepWiseScreenerType.TAG_DEFINITION
- VDW_ATR_REP = StepWiseScreenerType.VDW_ATR_REP
- VDW_BIN = StepWiseScreenerType.VDW_BIN
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class StubApplier(StepWiseScreener) |
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- Method resolution order:
- StubApplier
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, stub : rosetta.core.kinematics.Stub) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StubApplier, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.StubApplier) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.StubApplier) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.StepWiseScreener) -> bool
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
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class StubDistanceScreener(StepWiseScreener) |
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- Method resolution order:
- StubDistanceScreener
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(self : handle, moving_res_base_stub : rosetta.core.kinematics.Stub, reference_stub : rosetta.core.kinematics.Stub, max_distance_squared : float) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.StubDistanceScreener) -> bool
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StubDistanceScreener, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.StubDistanceScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.StubDistanceScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
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class SugarInstantiator(SampleApplier) |
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- Method resolution order:
- SugarInstantiator
- SampleApplier
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle, rosetta.core.pose.Pose, int) -> NoneType
doc
2. __init__(self : handle, screening_pose : rosetta.core.pose.Pose, moving_res : int, o2prime_instantiation_distance_cutoff : float) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.SugarInstantiator, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.SugarInstantiator) -> bool
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.SugarInstantiator) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.SugarInstantiator) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from SampleApplier:
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.SampleApplier, mover : rosetta.protocols.moves.CompositionMover, i : int, j : int) -> NoneType
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.SampleApplier, sampler : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- pose(...) from builtins.PyCapsule
- pose(rosetta.protocols.stepwise.screener.SampleApplier) -> rosetta.core.pose.Pose
- set_apply_residue_alternative_sampler_(...) from builtins.PyCapsule
- set_apply_residue_alternative_sampler_(self : rosetta.protocols.stepwise.screener.SampleApplier, setting : bool) -> NoneType
Methods inherited from StepWiseScreener:
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
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class TagDefinition(StepWiseScreener) |
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- Method resolution order:
- TagDefinition
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(handle, rosetta.core.pose.Pose, rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
doc
2. __init__(handle, rosetta.core.pose.Pose, rosetta.protocols.stepwise.screener.StepWiseScreener, bool) -> NoneType
doc
3. __init__(handle, rosetta.core.pose.Pose, rosetta.protocols.stepwise.screener.StepWiseScreener, bool, int) -> NoneType
doc
4. __init__(handle, rosetta.core.pose.Pose, rosetta.protocols.stepwise.screener.StepWiseScreener, bool, int, int) -> NoneType
doc
5. __init__(self : handle, pose : rosetta.core.pose.Pose, first_sampler : rosetta.protocols.stepwise.screener.StepWiseScreener, sampler_include_torsion_value_in_tag_ : bool, moving_res : int, reference_res : int, extra_tag : str) -> NoneType
6. __init__(handle, rosetta.protocols.stepwise.screener.TagDefinition) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- append_to_tag(...) from builtins.PyCapsule
- append_to_tag(self : rosetta.protocols.stepwise.screener.TagDefinition, value : str) -> NoneType
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.TagDefinition) -> bool
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.TagDefinition) -> str
- tag(...) from builtins.PyCapsule
- tag(rosetta.protocols.stepwise.screener.TagDefinition) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.TagDefinition) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
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class VDW_BinScreener(StepWiseScreener) |
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- Method resolution order:
- VDW_BinScreener
- StepWiseScreener
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : handle, vdw_bin_checker : rosetta.protocols.stepwise.modeler.rna.checker.RNA_VDW_BinChecker, screening_pose : rosetta.core.pose.Pose, moving_res : int) -> NoneType
2. __init__(self : handle, vdw_bin_checker : rosetta.protocols.stepwise.modeler.rna.checker.RNA_VDW_BinChecker, screening_pose : rosetta.core.pose.Pose, moving_res : int, screening_moving_rsd_at_origin : rosetta.core.conformation.Residue, moving_res_base_stub : rosetta.core.kinematics.Stub) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- check_screen(...) from builtins.PyCapsule
- check_screen(rosetta.protocols.stepwise.screener.VDW_BinScreener) -> bool
- fast_forward(...) from builtins.PyCapsule
- fast_forward(self : rosetta.protocols.stepwise.screener.VDW_BinScreener, sampler : rosetta.protocols.stepwise.sampler.StepWiseSamplerBase) -> NoneType
- name(...) from builtins.PyCapsule
- name(rosetta.protocols.stepwise.screener.VDW_BinScreener) -> str
- type(...) from builtins.PyCapsule
- type(rosetta.protocols.stepwise.screener.VDW_BinScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreenerType
Methods inherited from StepWiseScreener:
- add_mover(...) from builtins.PyCapsule
- add_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, update_mover : rosetta.protocols.moves.CompositionMover, restore_mover : rosetta.protocols.moves.CompositionMover) -> NoneType
- apply_mover(...) from builtins.PyCapsule
- apply_mover(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.moves.CompositionMover, : int, : int) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : rosetta.protocols.stepwise.screener.StepWiseScreener) -> rosetta.protocols.stepwise.screener.StepWiseScreener
- count(...) from builtins.PyCapsule
- count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> int
- get_update(...) from builtins.PyCapsule
- get_update(self : rosetta.protocols.stepwise.screener.StepWiseScreener, : protocols::stepwise::sampler::StepWiseSamplerBase) -> NoneType
- increment_count(...) from builtins.PyCapsule
- increment_count(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- reset(...) from builtins.PyCapsule
- reset(rosetta.protocols.stepwise.screener.StepWiseScreener) -> NoneType
- set_ok_to_increment(...) from builtins.PyCapsule
- set_ok_to_increment(self : rosetta.protocols.stepwise.screener.StepWiseScreener, setting : bool) -> NoneType
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