Bindings for protocols::stepwise::monte_carlo namespace

Modules
		rosetta.protocols.stepwise.monte_carlo.mover rosetta.protocols.stepwise.monte_carlo.options rosetta.protocols.stepwise.monte_carlo.rna rosetta.protocols.stepwise.monte_carlo.submotif

Classes
		rosetta.protocols.moves.Mover(builtins.object) StepWiseMonteCarlo   class StepWiseMonteCarlo(rosetta.protocols.moves.Mover)       Method resolution order: StepWiseMonteCarlo rosetta.protocols.moves.Mover builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(self : handle, scorefxn : rosetta.core.scoring.ScoreFunction) -> NoneType   2. __init__(handle, rosetta.protocols.stepwise.monte_carlo.StepWiseMonteCarlo) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. apply(...) from builtins.PyCapsule apply(self : rosetta.protocols.stepwise.monte_carlo.StepWiseMonteCarlo, pose : rosetta.core.pose.Pose) -> NoneType   Apply the loop-rebuild protocol to the input pose get_name(...) from builtins.PyCapsule get_name(rosetta.protocols.stepwise.monte_carlo.StepWiseMonteCarlo) -> str master_mover(...) from builtins.PyCapsule master_mover(rosetta.protocols.stepwise.monte_carlo.StepWiseMonteCarlo) -> protocols::stepwise::monte_carlo::mover::StepWiseMasterMover model_tag(...) from builtins.PyCapsule model_tag(rosetta.protocols.stepwise.monte_carlo.StepWiseMonteCarlo) -> str move(...) from builtins.PyCapsule move(rosetta.protocols.stepwise.monte_carlo.StepWiseMonteCarlo) -> rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove options(...) from builtins.PyCapsule options(rosetta.protocols.stepwise.monte_carlo.StepWiseMonteCarlo) -> protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions out_path(...) from builtins.PyCapsule out_path(rosetta.protocols.stepwise.monte_carlo.StepWiseMonteCarlo) -> str set_model_tag(...) from builtins.PyCapsule set_model_tag(self : rosetta.protocols.stepwise.monte_carlo.StepWiseMonteCarlo, setting : str) -> NoneType set_move(...) from builtins.PyCapsule set_move(self : rosetta.protocols.stepwise.monte_carlo.StepWiseMonteCarlo, setting : rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) -> NoneType set_native_pose(...) from builtins.PyCapsule set_native_pose(self : rosetta.protocols.stepwise.monte_carlo.StepWiseMonteCarlo, pose : rosetta.core.pose.Pose) -> NoneType   setter for native poses contained for rms ---- we should get rid of this method? it is widely used, but a bit unsafe set_options(...) from builtins.PyCapsule set_options(self : rosetta.protocols.stepwise.monte_carlo.StepWiseMonteCarlo, options : protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions) -> NoneType set_out_path(...) from builtins.PyCapsule set_out_path(self : rosetta.protocols.stepwise.monte_carlo.StepWiseMonteCarlo, setting : str) -> NoneType set_submotif_library(...) from builtins.PyCapsule set_submotif_library(self : rosetta.protocols.stepwise.monte_carlo.StepWiseMonteCarlo, setting : protocols::stepwise::monte_carlo::submotif::SubMotifLibrary) -> NoneType Methods inherited from rosetta.protocols.moves.Mover: assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.moves.Mover, other : rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover clear_info(...) from builtins.PyCapsule clear_info(rosetta.protocols.moves.Mover) -> NoneType   Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.      clear_info is called by jd2 before calling apply clone(...) from builtins.PyCapsule clone(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover   Return a clone of the Mover object. create(...) from builtins.PyCapsule create(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover fresh_instance(...) from builtins.PyCapsule fresh_instance(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover   Generates a new Mover object freshly created with the default ctor. get_additional_output(...) from builtins.PyCapsule get_additional_output(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose   fpd      Mechanism by which a mover may return multiple output poses from a single input pose. get_current_job(...) from builtins.PyCapsule get_current_job(rosetta.protocols.moves.Mover) -> protocols::jobdist::BasicJob get_current_tag(...) from builtins.PyCapsule get_current_tag(rosetta.protocols.moves.Mover) -> str   A tag is a unique identifier used to identify structures produced  by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag )  sets the tag.  This functionality is not intended for use with the 2008 job distributor. get_input_pose(...) from builtins.PyCapsule get_input_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_last_move_status(...) from builtins.PyCapsule get_last_move_status(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.MoverStatus   returns status after an apply().  The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return. get_native_pose(...) from builtins.PyCapsule get_native_pose(rosetta.protocols.moves.Mover) -> rosetta.core.pose.Pose get_self_ptr(...) from builtins.PyCapsule get_self_ptr(*args, **kwargs) Overloaded function.   1. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover   2. get_self_ptr(rosetta.protocols.moves.Mover) -> rosetta.protocols.moves.Mover get_self_weak_ptr(...) from builtins.PyCapsule get_self_weak_ptr(*args, **kwargs) Overloaded function.   1. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_const_protocols_moves_Mover_t   2. get_self_weak_ptr(rosetta.protocols.moves.Mover) -> rosetta.std.weak_ptr_protocols_moves_Mover_t get_type(...) from builtins.PyCapsule get_type(rosetta.protocols.moves.Mover) -> str info(...) from builtins.PyCapsule info(*args, **kwargs) Overloaded function.   1. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   non-const accessor   2. info(rosetta.protocols.moves.Mover) -> rosetta.std.list_std_string_std_allocator_std_string_t   const accessor last_proposal_density_ratio(...) from builtins.PyCapsule last_proposal_density_ratio(rosetta.protocols.moves.Mover) -> float name(...) from builtins.PyCapsule name() -> str register_options(...) from builtins.PyCapsule register_options(*args, **kwargs) Overloaded function.   1. register_options() -> NoneType   Overload this static method if you access options within the mover.      These options will end up in -help of your application if users of this mover call register_options.  Do this recursively!  If you use movers within your mover, call their register_options in your register_options() method.   2. register_options() -> NoneType   3. register_options() -> NoneType   4. register_options() -> NoneType   5. register_options() -> NoneType   6. register_options() -> NoneType   7. register_options() -> NoneType   8. register_options() -> NoneType   9. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   10. register_options() -> NoneType   Associates relevant options with the AntibodyModeler class   11. register_options() -> NoneType   Associates relevant options with the SnugDock class   12. register_options() -> NoneType   Associates relevant options with the SnugDockProtocol class   13. register_options() -> NoneType   Register the options used by this mover with the global options  system.   14. register_options() -> NoneType   15. register_options() -> NoneType   Associate relevant options with the TemperedDocking class.   16. register_options() -> NoneType   17. register_options() -> NoneType   18. register_options() -> NoneType   Associates relevant options with the TemperedDocking class.   19. register_options() -> NoneType   20. register_options() -> NoneType   Associates relevant options with the ConstraintSetMover class   21. register_options() -> NoneType   22. register_options() -> NoneType   Associates relevant options with the DockingInitialPerturbation class   23. register_options() -> NoneType   Associates relevant options with the DockingProtocol class   24. register_options() -> NoneType   Associates relevant options with the TemperedDocking class   25. register_options() -> NoneType   26. register_options() -> NoneType   27. register_options() -> NoneType   28. register_options() -> NoneType   register options   29. register_options() -> NoneType   30. register_options() -> NoneType   Registers applicable options   31. register_options() -> NoneType   Register options with the option system.   32. register_options() -> NoneType   33. register_options() -> NoneType   34. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   35. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycleContainer class   36. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   37. register_options() -> NoneType   Associates relevant options with the LoopRefineInnerCycle class   38. register_options() -> NoneType   39. register_options() -> NoneType   Register options with the option system.   40. register_options() -> NoneType reinitialize_for_each_job(...) from builtins.PyCapsule reinitialize_for_each_job(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on  each use. reinitialize_for_new_input(...) from builtins.PyCapsule reinitialize_for_new_input(rosetta.protocols.moves.Mover) -> bool   Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input  pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for  that one input pose). reset_status(...) from builtins.PyCapsule reset_status(rosetta.protocols.moves.Mover) -> NoneType   resets status to SUCCESS, meant to be used before an apply().  The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. set_current_job(...) from builtins.PyCapsule set_current_job(self : rosetta.protocols.moves.Mover, job : protocols::jobdist::BasicJob) -> NoneType   ////////////////////////////end Job Distributor interface//////////////////////////////////////// set_current_tag(...) from builtins.PyCapsule set_current_tag(self : rosetta.protocols.moves.Mover, new_tag : str) -> NoneType set_input_pose(...) from builtins.PyCapsule set_input_pose(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   setter for poses contained for rms set_type(...) from builtins.PyCapsule set_type(self : rosetta.protocols.moves.Mover, setting : str) -> NoneType test_move(...) from builtins.PyCapsule test_move(self : rosetta.protocols.moves.Mover, pose : rosetta.core.pose.Pose) -> NoneType   : Unit test support function.  Apply one move to a given pose.       Allows extra test specific functions to be called before applying type(...) from builtins.PyCapsule type(*args, **kwargs) Overloaded function.   1. type(rosetta.protocols.moves.Mover) -> str   2. type(self : rosetta.protocols.moves.Mover, type_in : str) -> NoneType

Functions
		build_full_model(...) method of builtins.PyCapsule instance build_full_model(*args, **kwargs) Overloaded function.   1. build_full_model(start_pose : rosetta.core.pose.Pose, full_model_pose : rosetta.core.pose.Pose) -> NoneType   2. build_full_model(start_pose : rosetta.core.pose.Pose) -> rosetta.core.pose.Pose get_all_res_list(...) method of builtins.PyCapsule instance get_all_res_list(pose : rosetta.core.pose.Pose) -> str get_move_type_string(...) method of builtins.PyCapsule instance get_move_type_string(swa_move : rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) -> str output_to_silent_file(...) method of builtins.PyCapsule instance output_to_silent_file(*args, **kwargs) Overloaded function.   1. output_to_silent_file(out_tag : str, silent_file : str, pose : rosetta.core.pose.Pose, native_pose : rosetta.core.pose.Pose) -> NoneType   2. output_to_silent_file(out_tag : str, silent_file : str, pose : rosetta.core.pose.Pose, native_pose : rosetta.core.pose.Pose, superimpose_over_all_instantiated : bool) -> NoneType   3. output_to_silent_file(out_tag : str, silent_file : str, pose : rosetta.core.pose.Pose, native_pose : rosetta.core.pose.Pose, superimpose_over_all_instantiated : bool, do_rms_fill_calculation : bool) -> NoneType   4. output_to_silent_file(out_tag : str, silent_file : str, pose : rosetta.core.pose.Pose) -> NoneType   5. output_to_silent_file(silent_file : str, pose_list : rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t, native_pose : rosetta.core.pose.Pose) -> NoneType prepare_silent_struct(...) method of builtins.PyCapsule instance prepare_silent_struct(*args, **kwargs) Overloaded function.   1. prepare_silent_struct(out_tag : str, pose : rosetta.core.pose.Pose, native_pose : rosetta.core.pose.Pose) -> rosetta.core.io.silent.SilentStruct   2. prepare_silent_struct(out_tag : str, pose : rosetta.core.pose.Pose, native_pose : rosetta.core.pose.Pose, superimpose_over_all_instantiated : bool) -> rosetta.core.io.silent.SilentStruct   3. prepare_silent_struct(out_tag : str, pose : rosetta.core.pose.Pose, native_pose : rosetta.core.pose.Pose, superimpose_over_all_instantiated : bool, do_rms_fill_calculation : bool) -> rosetta.core.io.silent.SilentStruct   4. prepare_silent_struct(out_tag : str, pose : rosetta.core.pose.Pose, native_pose : rosetta.core.pose.Pose, superimpose_over_all_instantiated : bool, do_rms_fill_calculation : bool, full_model_pose : rosetta.core.pose.Pose) -> rosetta.core.io.silent.SilentStruct