Bindings for protocols::stepwise::modeler::working_parameters namespace

Classes
		builtins.object StepWiseBasicWorkingParameters StepWiseWorkingParameters   class StepWiseBasicWorkingParameters(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> NoneType   2. __init__(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters,  : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. actually_moving_res(...) from builtins.PyCapsule actually_moving_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> int apply_full_to_sub_mapping(...) from builtins.PyCapsule apply_full_to_sub_mapping(*args, **kwargs) Overloaded function.   1. apply_full_to_sub_mapping(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, res_vector : rosetta.utility.vector1_unsigned_long) -> rosetta.utility.vector1_unsigned_long   2. apply_full_to_sub_mapping(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, res : int) -> int assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters,  : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters calc_rms_res(...) from builtins.PyCapsule calc_rms_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long chain_boundaries(...) from builtins.PyCapsule chain_boundaries(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t const_full_to_sub(...) from builtins.PyCapsule const_full_to_sub(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.std.map_unsigned_long_unsigned_long const_sub_to_full(...) from builtins.PyCapsule const_sub_to_full(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.std.map_unsigned_long_unsigned_long create_sub_to_full_map(...) from builtins.PyCapsule create_sub_to_full_map(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, full_to_sub : rosetta.std.map_unsigned_long_unsigned_long) -> rosetta.std.map_unsigned_long_unsigned_long cutpoint_closed_list(...) from builtins.PyCapsule cutpoint_closed_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long cutpoint_open_list(...) from builtins.PyCapsule cutpoint_open_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long fixed_res(...) from builtins.PyCapsule fixed_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long full_sequence(...) from builtins.PyCapsule full_sequence(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> str full_to_sub(...) from builtins.PyCapsule full_to_sub(*args, **kwargs) Overloaded function.   1. full_to_sub(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.std.map_unsigned_long_unsigned_long   2. full_to_sub(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, i : int) -> int gap_size(...) from builtins.PyCapsule gap_size(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> int is_internal(...) from builtins.PyCapsule is_internal(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> bool is_prepend(...) from builtins.PyCapsule is_prepend(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> bool is_working_res(...) from builtins.PyCapsule is_working_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long moving_res(...) from builtins.PyCapsule moving_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> int partition_definition(...) from builtins.PyCapsule partition_definition(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> ObjexxFCL::FArray1D<bool> sequence(...) from builtins.PyCapsule sequence(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> str set_calc_rms_res(...) from builtins.PyCapsule set_calc_rms_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, calc_rms_res : rosetta.utility.vector1_unsigned_long) -> NoneType set_chain_boundaries(...) from builtins.PyCapsule set_chain_boundaries(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t) -> NoneType set_cutpoint_closed_list(...) from builtins.PyCapsule set_cutpoint_closed_list(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_cutpoint_open_list(...) from builtins.PyCapsule set_cutpoint_open_list(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_fixed_res(...) from builtins.PyCapsule set_fixed_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, fixed_res : rosetta.utility.vector1_unsigned_long) -> NoneType set_full_sequence(...) from builtins.PyCapsule set_full_sequence(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : str) -> NoneType set_full_to_sub(...) from builtins.PyCapsule set_full_to_sub(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : rosetta.std.map_unsigned_long_unsigned_long) -> NoneType set_gap_size(...) from builtins.PyCapsule set_gap_size(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : int) -> NoneType set_is_internal(...) from builtins.PyCapsule set_is_internal(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : bool) -> NoneType set_is_prepend(...) from builtins.PyCapsule set_is_prepend(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : bool) -> NoneType set_is_working_res(...) from builtins.PyCapsule set_is_working_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_moving_res(...) from builtins.PyCapsule set_moving_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : int) -> NoneType set_partition_definition(...) from builtins.PyCapsule set_partition_definition(*args, **kwargs) Overloaded function.   1. set_partition_definition(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : ObjexxFCL::FArray1D<bool>) -> NoneType   2. set_partition_definition(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, partition_definition_vector : rosetta.utility.vector1_unsigned_long) -> NoneType set_sequence(...) from builtins.PyCapsule set_sequence(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : str) -> NoneType set_working_calc_rms_res(...) from builtins.PyCapsule set_working_calc_rms_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, working_calc_rms_res : rosetta.utility.vector1_unsigned_long) -> NoneType set_working_fixed_res(...) from builtins.PyCapsule set_working_fixed_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, working_fixed_res : rosetta.utility.vector1_unsigned_long) -> NoneType set_working_moving_partition_res(...) from builtins.PyCapsule set_working_moving_partition_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, working_moving_partition_res : rosetta.utility.vector1_unsigned_long) -> NoneType set_working_moving_res_list(...) from builtins.PyCapsule set_working_moving_res_list(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_working_native_pose(...) from builtins.PyCapsule set_working_native_pose(*args, **kwargs) Overloaded function.   1. set_working_native_pose(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, pose : rosetta.core.pose.Pose) -> NoneType   2. set_working_native_pose(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, pose : rosetta.core.pose.Pose) -> NoneType sub_to_full(...) from builtins.PyCapsule sub_to_full(*args, **kwargs) Overloaded function.   1. sub_to_full(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.std.map_unsigned_long_unsigned_long   2. sub_to_full(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, i : int) -> int working_calc_rms_res(...) from builtins.PyCapsule working_calc_rms_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_fixed_res(...) from builtins.PyCapsule working_fixed_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_moving_partition_res(...) from builtins.PyCapsule working_moving_partition_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_moving_res(...) from builtins.PyCapsule working_moving_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> int working_moving_res_list(...) from builtins.PyCapsule working_moving_res_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_moving_suite(...) from builtins.PyCapsule working_moving_suite(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> int working_moving_suite_list(...) from builtins.PyCapsule working_moving_suite_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_native_pose(...) from builtins.PyCapsule working_native_pose(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.core.pose.Pose working_res_list(...) from builtins.PyCapsule working_res_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_sequence(...) from builtins.PyCapsule working_sequence(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> str   class StepWiseWorkingParameters(StepWiseBasicWorkingParameters)       Method resolution order: StepWiseWorkingParameters StepWiseBasicWorkingParameters builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. actually_moving_res(...) from builtins.PyCapsule actually_moving_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> int add_virt_res_as_root(...) from builtins.PyCapsule add_virt_res_as_root(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> bool assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters,  : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters block_stack_above_res(...) from builtins.PyCapsule block_stack_above_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long block_stack_below_res(...) from builtins.PyCapsule block_stack_below_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long five_prime_chain_break_res(...) from builtins.PyCapsule five_prime_chain_break_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> int floating_base(...) from builtins.PyCapsule floating_base(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> bool floating_base_anchor_res(...) from builtins.PyCapsule floating_base_anchor_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> int fold_tree(...) from builtins.PyCapsule fold_tree(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.core.kinematics.FoldTree force_anti_chi_res_list(...) from builtins.PyCapsule force_anti_chi_res_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long force_north_sugar_list(...) from builtins.PyCapsule force_north_sugar_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long force_south_sugar_list(...) from builtins.PyCapsule force_south_sugar_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long force_syn_chi_res_list(...) from builtins.PyCapsule force_syn_chi_res_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long gap_size_to_anchor(...) from builtins.PyCapsule gap_size_to_anchor(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> int global_sample_res_list(...) from builtins.PyCapsule global_sample_res_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long input_res_vectors(...) from builtins.PyCapsule input_res_vectors(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_utility_vector1_unsigned_long_std_allocator_unsigned_long_t is_moving_res(...) from builtins.PyCapsule is_moving_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> ObjexxFCL::FArray1D<unsigned long> is_pre_proline(...) from builtins.PyCapsule is_pre_proline(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_bool is_prepend_map(...) from builtins.PyCapsule is_prepend_map(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.std.map_unsigned_long_bool is_simple_full_length_job_params(...) from builtins.PyCapsule is_simple_full_length_job_params(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> bool native_alignment(...) from builtins.PyCapsule native_alignment(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long output_extra_RMSDs(...) from builtins.PyCapsule output_extra_RMSDs(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> bool   ////////////////////// protonated_H1_adenosine_list(...) from builtins.PyCapsule protonated_H1_adenosine_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long rebuild_bulge_mode(...) from builtins.PyCapsule rebuild_bulge_mode(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> bool sample_both_sugar_base_rotamer(...) from builtins.PyCapsule sample_both_sugar_base_rotamer(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> bool set_add_virt_res_as_root(...) from builtins.PyCapsule set_add_virt_res_as_root(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : bool) -> NoneType set_block_stack_above_res(...) from builtins.PyCapsule set_block_stack_above_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, block_stack_above_res : rosetta.utility.vector1_unsigned_long) -> NoneType set_block_stack_below_res(...) from builtins.PyCapsule set_block_stack_below_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, block_stack_below_res : rosetta.utility.vector1_unsigned_long) -> NoneType set_five_prime_chain_break_res(...) from builtins.PyCapsule set_five_prime_chain_break_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : int) -> NoneType set_floating_base(...) from builtins.PyCapsule set_floating_base(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : bool) -> NoneType set_floating_base_anchor_res(...) from builtins.PyCapsule set_floating_base_anchor_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : int) -> NoneType set_fold_tree(...) from builtins.PyCapsule set_fold_tree(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : rosetta.core.kinematics.FoldTree) -> NoneType set_force_anti_chi_res_list(...) from builtins.PyCapsule set_force_anti_chi_res_list(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_force_north_sugar_list(...) from builtins.PyCapsule set_force_north_sugar_list(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_force_south_sugar_list(...) from builtins.PyCapsule set_force_south_sugar_list(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_force_syn_chi_res_list(...) from builtins.PyCapsule set_force_syn_chi_res_list(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_global_sample_res_list(...) from builtins.PyCapsule set_global_sample_res_list(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_input_res_vectors(...) from builtins.PyCapsule set_input_res_vectors(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : rosetta.utility.vector1_utility_vector1_unsigned_long_std_allocator_unsigned_long_t) -> NoneType set_is_moving_res(...) from builtins.PyCapsule set_is_moving_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : ObjexxFCL::FArray1D<unsigned long>) -> NoneType set_is_prepend_map(...) from builtins.PyCapsule set_is_prepend_map(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : rosetta.std.map_unsigned_long_bool) -> NoneType set_is_simple_full_length_job_params(...) from builtins.PyCapsule set_is_simple_full_length_job_params(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : bool) -> NoneType set_native_alignment(...) from builtins.PyCapsule set_native_alignment(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_output_extra_RMSDs(...) from builtins.PyCapsule set_output_extra_RMSDs(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : bool) -> NoneType set_protonated_H1_adenosine_list(...) from builtins.PyCapsule set_protonated_H1_adenosine_list(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_rebuild_bulge_mode(...) from builtins.PyCapsule set_rebuild_bulge_mode(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : bool) -> NoneType set_sample_both_sugar_base_rotamer(...) from builtins.PyCapsule set_sample_both_sugar_base_rotamer(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : bool) -> NoneType set_terminal_res(...) from builtins.PyCapsule set_terminal_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, terminal_res : rosetta.utility.vector1_unsigned_long) -> NoneType set_working_best_alignment(...) from builtins.PyCapsule set_working_best_alignment(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_working_bridge_res(...) from builtins.PyCapsule set_working_bridge_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_working_native_alignment(...) from builtins.PyCapsule set_working_native_alignment(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_working_superimpose_res(...) from builtins.PyCapsule set_working_superimpose_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, working_superimpose_res : rosetta.utility.vector1_unsigned_long) -> NoneType terminal_res(...) from builtins.PyCapsule terminal_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_best_alignment(...) from builtins.PyCapsule working_best_alignment(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_block_stack_above_res(...) from builtins.PyCapsule working_block_stack_above_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_block_stack_below_res(...) from builtins.PyCapsule working_block_stack_below_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_bridge_res(...) from builtins.PyCapsule working_bridge_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long   ////////////////////// working_floating_base_anchor_res(...) from builtins.PyCapsule working_floating_base_anchor_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> int working_force_anti_chi_res_list(...) from builtins.PyCapsule working_force_anti_chi_res_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_force_north_sugar_list(...) from builtins.PyCapsule working_force_north_sugar_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_force_south_sugar_list(...) from builtins.PyCapsule working_force_south_sugar_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_force_syn_chi_res_list(...) from builtins.PyCapsule working_force_syn_chi_res_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_global_sample_res_list(...) from builtins.PyCapsule working_global_sample_res_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_native_alignment(...) from builtins.PyCapsule working_native_alignment(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_protonated_H1_adenosine_list(...) from builtins.PyCapsule working_protonated_H1_adenosine_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_reference_res(...) from builtins.PyCapsule working_reference_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> int working_superimpose_res(...) from builtins.PyCapsule working_superimpose_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_terminal_res(...) from builtins.PyCapsule working_terminal_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) -> rosetta.utility.vector1_unsigned_long Methods inherited from StepWiseBasicWorkingParameters: apply_full_to_sub_mapping(...) from builtins.PyCapsule apply_full_to_sub_mapping(*args, **kwargs) Overloaded function.   1. apply_full_to_sub_mapping(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, res_vector : rosetta.utility.vector1_unsigned_long) -> rosetta.utility.vector1_unsigned_long   2. apply_full_to_sub_mapping(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, res : int) -> int calc_rms_res(...) from builtins.PyCapsule calc_rms_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long chain_boundaries(...) from builtins.PyCapsule chain_boundaries(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t const_full_to_sub(...) from builtins.PyCapsule const_full_to_sub(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.std.map_unsigned_long_unsigned_long const_sub_to_full(...) from builtins.PyCapsule const_sub_to_full(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.std.map_unsigned_long_unsigned_long create_sub_to_full_map(...) from builtins.PyCapsule create_sub_to_full_map(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, full_to_sub : rosetta.std.map_unsigned_long_unsigned_long) -> rosetta.std.map_unsigned_long_unsigned_long cutpoint_closed_list(...) from builtins.PyCapsule cutpoint_closed_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long cutpoint_open_list(...) from builtins.PyCapsule cutpoint_open_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long fixed_res(...) from builtins.PyCapsule fixed_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long full_sequence(...) from builtins.PyCapsule full_sequence(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> str full_to_sub(...) from builtins.PyCapsule full_to_sub(*args, **kwargs) Overloaded function.   1. full_to_sub(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.std.map_unsigned_long_unsigned_long   2. full_to_sub(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, i : int) -> int gap_size(...) from builtins.PyCapsule gap_size(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> int is_internal(...) from builtins.PyCapsule is_internal(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> bool is_prepend(...) from builtins.PyCapsule is_prepend(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> bool is_working_res(...) from builtins.PyCapsule is_working_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long moving_res(...) from builtins.PyCapsule moving_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> int partition_definition(...) from builtins.PyCapsule partition_definition(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> ObjexxFCL::FArray1D<bool> sequence(...) from builtins.PyCapsule sequence(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> str set_calc_rms_res(...) from builtins.PyCapsule set_calc_rms_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, calc_rms_res : rosetta.utility.vector1_unsigned_long) -> NoneType set_chain_boundaries(...) from builtins.PyCapsule set_chain_boundaries(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t) -> NoneType set_cutpoint_closed_list(...) from builtins.PyCapsule set_cutpoint_closed_list(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_cutpoint_open_list(...) from builtins.PyCapsule set_cutpoint_open_list(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_fixed_res(...) from builtins.PyCapsule set_fixed_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, fixed_res : rosetta.utility.vector1_unsigned_long) -> NoneType set_full_sequence(...) from builtins.PyCapsule set_full_sequence(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : str) -> NoneType set_full_to_sub(...) from builtins.PyCapsule set_full_to_sub(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : rosetta.std.map_unsigned_long_unsigned_long) -> NoneType set_gap_size(...) from builtins.PyCapsule set_gap_size(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : int) -> NoneType set_is_internal(...) from builtins.PyCapsule set_is_internal(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : bool) -> NoneType set_is_prepend(...) from builtins.PyCapsule set_is_prepend(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : bool) -> NoneType set_is_working_res(...) from builtins.PyCapsule set_is_working_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_moving_res(...) from builtins.PyCapsule set_moving_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : int) -> NoneType set_partition_definition(...) from builtins.PyCapsule set_partition_definition(*args, **kwargs) Overloaded function.   1. set_partition_definition(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : ObjexxFCL::FArray1D<bool>) -> NoneType   2. set_partition_definition(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, partition_definition_vector : rosetta.utility.vector1_unsigned_long) -> NoneType set_sequence(...) from builtins.PyCapsule set_sequence(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : str) -> NoneType set_working_calc_rms_res(...) from builtins.PyCapsule set_working_calc_rms_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, working_calc_rms_res : rosetta.utility.vector1_unsigned_long) -> NoneType set_working_fixed_res(...) from builtins.PyCapsule set_working_fixed_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, working_fixed_res : rosetta.utility.vector1_unsigned_long) -> NoneType set_working_moving_partition_res(...) from builtins.PyCapsule set_working_moving_partition_res(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, working_moving_partition_res : rosetta.utility.vector1_unsigned_long) -> NoneType set_working_moving_res_list(...) from builtins.PyCapsule set_working_moving_res_list(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting : rosetta.utility.vector1_unsigned_long) -> NoneType set_working_native_pose(...) from builtins.PyCapsule set_working_native_pose(*args, **kwargs) Overloaded function.   1. set_working_native_pose(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, pose : rosetta.core.pose.Pose) -> NoneType   2. set_working_native_pose(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, pose : rosetta.core.pose.Pose) -> NoneType sub_to_full(...) from builtins.PyCapsule sub_to_full(*args, **kwargs) Overloaded function.   1. sub_to_full(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.std.map_unsigned_long_unsigned_long   2. sub_to_full(self : rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, i : int) -> int working_calc_rms_res(...) from builtins.PyCapsule working_calc_rms_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_fixed_res(...) from builtins.PyCapsule working_fixed_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_moving_partition_res(...) from builtins.PyCapsule working_moving_partition_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_moving_res(...) from builtins.PyCapsule working_moving_res(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> int working_moving_res_list(...) from builtins.PyCapsule working_moving_res_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_moving_suite(...) from builtins.PyCapsule working_moving_suite(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> int working_moving_suite_list(...) from builtins.PyCapsule working_moving_suite_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_native_pose(...) from builtins.PyCapsule working_native_pose(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.core.pose.Pose working_res_list(...) from builtins.PyCapsule working_res_list(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> rosetta.utility.vector1_unsigned_long working_sequence(...) from builtins.PyCapsule working_sequence(rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> str

Functions
		figure_out_rebuild_bulge_mode(...) method of builtins.PyCapsule instance figure_out_rebuild_bulge_mode(pose : rosetta.core.pose.Pose, rebuild_res : int) -> bool figure_out_sample_both_sugar_base_rotamer(...) method of builtins.PyCapsule instance figure_out_sample_both_sugar_base_rotamer(pose : rosetta.core.pose.Pose, floating_base : bool, rebuild_suite : int) -> bool setup_working_parameters_explicit(...) method of builtins.PyCapsule instance setup_working_parameters_explicit(rebuild_res : int, pose : rosetta.core.pose.Pose, native_pose : rosetta.core.pose.Pose) -> rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters setup_working_parameters_for_swa(...) method of builtins.PyCapsule instance setup_working_parameters_for_swa(moving_res_list : rosetta.utility.vector1_unsigned_long, pose : rosetta.core.pose.Pose, native_pose : rosetta.core.pose.Pose, bridge_res : rosetta.utility.vector1_unsigned_long, working_minimize_res : rosetta.utility.vector1_unsigned_long) -> rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters