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- builtins.object
-
- ANN
- GDB
- PDB
- PDB_Entry
- RingData
- Sparta
- rosetta.protocols.evaluation.EvaluatorCreator(builtins.object)
-
- ChemicalShiftEvaluatorCreator
- rosetta.protocols.evaluation.SingleValuePoseEvaluator_double_t(rosetta.protocols.evaluation.PoseEvaluator)
-
- ChemicalShiftEvaluator
class ANN(builtins.object) |
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.protocols.sparta.ANN) -> NoneType
2. __init__(self : rosetta.protocols.sparta.ANN, dPATH : str, dNAME_PREFIX : str) -> NoneType
3. __init__(self : rosetta.protocols.sparta.ANN, N1_nodeI : int, N1_nodeH : int, N1_nodeO : int, dPATH : str, dNAME_PREFIX : str) -> NoneType
4. __init__(self : rosetta.protocols.sparta.ANN, N1_nodeI : int, N1_nodeH : int, N1_nodeO : int, N2_nodeI : int, N2_nodeH : int, N2_nodeO : int, dPATH : str, dNAME_PREFIX : str) -> NoneType
5. __init__(self : rosetta.protocols.sparta.ANN, : rosetta.protocols.sparta.ANN) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- applyANNTransformation(...) from builtins.PyCapsule
- applyANNTransformation(self : rosetta.protocols.sparta.ANN, inp : rosetta.utility.vector0_float, w : rosetta.std.map_int_utility_vector0_float_std_allocator_float_t, b : rosetta.utility.vector0_float, out : rosetta.utility.vector0_float, code : int) -> NoneType
- applyVecAverage(...) from builtins.PyCapsule
- applyVecAverage(self : rosetta.protocols.sparta.ANN, v1 : rosetta.utility.vector0_float, v2 : rosetta.utility.vector0_float, v3 : rosetta.utility.vector0_float, vout : rosetta.utility.vector0_float) -> NoneType
- applyVecNormalization(...) from builtins.PyCapsule
- applyVecNormalization(self : rosetta.protocols.sparta.ANN, v : rosetta.utility.vector0_float) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.sparta.ANN, : rosetta.protocols.sparta.ANN) -> rosetta.protocols.sparta.ANN
- calcLevel1(...) from builtins.PyCapsule
- calcLevel1(rosetta.protocols.sparta.ANN) -> NoneType
- calcLevel2(...) from builtins.PyCapsule
- calcLevel2(rosetta.protocols.sparta.ANN) -> NoneType
- ftoa(...) from builtins.PyCapsule
- ftoa(*args, **kwargs)
Overloaded function.
1. ftoa(self : rosetta.protocols.sparta.ANN, n : float, buff : str) -> str
2. ftoa(self : rosetta.protocols.sparta.ANN, n : float, buff : str, f : str) -> str
3. ftoa(self : rosetta.protocols.sparta.ANN, n : float, buff : str, f : str, prec : int) -> str
- getConfidence(...) from builtins.PyCapsule
- getConfidence(self : rosetta.protocols.sparta.ANN, v : rosetta.utility.vector0_float) -> float
- getNumberMissCS(...) from builtins.PyCapsule
- getNumberMissCS(self : rosetta.protocols.sparta.ANN, v : rosetta.utility.vector0_float) -> int
- getSlashChar(...) from builtins.PyCapsule
- getSlashChar(rosetta.protocols.sparta.ANN) -> NoneType
- init(...) from builtins.PyCapsule
- init(self : rosetta.protocols.sparta.ANN, N1_nodeI : int, N1_nodeH : int, N1_nodeO : int, N2_nodeI : int, N2_nodeH : int, N2_nodeO : int, dPATH : str, dNAME_PREFIX : str) -> NoneType
- itoa(...) from builtins.PyCapsule
- itoa(*args, **kwargs)
Overloaded function.
1. itoa(self : rosetta.protocols.sparta.ANN, n : int, buff : str) -> str
2. itoa(self : rosetta.protocols.sparta.ANN, n : int, buff : str, base : int) -> str
- loadWeightBias3(...) from builtins.PyCapsule
- loadWeightBias3(self : rosetta.protocols.sparta.ANN, fName : str, W1 : rosetta.std.map_int_utility_vector0_float_std_allocator_float_t, B1 : rosetta.utility.vector0_float, W2 : rosetta.std.map_int_utility_vector0_float_std_allocator_float_t, B2 : rosetta.utility.vector0_float, W3 : rosetta.std.map_int_utility_vector0_float_std_allocator_float_t, B3 : rosetta.utility.vector0_float, N_W_row : int, N_W_col : int, N_B : int) -> NoneType
- loadWeights(...) from builtins.PyCapsule
- loadWeights(rosetta.protocols.sparta.ANN) -> NoneType
- runSpartaANN(...) from builtins.PyCapsule
- runSpartaANN(self : rosetta.protocols.sparta.ANN, inMatrix : rosetta.std.map_int_utility_vector0_float_std_allocator_float_t) -> NoneType
- set_input_code(...) from builtins.PyCapsule
- set_input_code(self : rosetta.protocols.sparta.ANN, c : int) -> NoneType
Data descriptors defined here:
- ANN_IN_MTX
- ANN_IN_MTX_LEVEL1
- ANN_IN_MTX_LEVEL2
- ANN_OUT_MTX_LEVEL1
- ANN_OUT_MTX_LEVEL2
- B2I_1
- B2I_2
- B2I_3
- B2L1_1
- B2L1_2
- B2L1_3
- B2L2_1
- B2L2_2
- B2L2_3
- BI_1
- BI_2
- BI_3
- BL1_1
- BL1_2
- BL1_3
- BL2_1
- BL2_2
- BL2_3
- DB_FNAME_LEVEL1_1
- DB_FNAME_LEVEL1_2
- DB_FNAME_LEVEL1_3
- DB_FNAME_LEVEL2_1
- DB_FNAME_LEVEL2_2
- DB_FNAME_LEVEL2_3
- DB_NAME_PREFIX
- DB_PATH
- N1_NODE_H
- N1_NODE_I
- N1_NODE_O
- N2_NODE_H
- N2_NODE_I
- N2_NODE_O
- W2I_1
- W2I_2
- W2I_3
- W2L1_1
- W2L1_2
- W2L1_3
- W2L2_1
- W2L2_2
- W2L2_3
- WI_1
- WI_2
- WI_3
- WL1_1
- WL1_2
- WL1_3
- WL2_1
- WL2_2
- WL2_3
- input_code
- slash_char
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class ChemicalShiftEvaluator(rosetta.protocols.evaluation.SingleValuePoseEvaluator_double_t) |
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- Method resolution order:
- ChemicalShiftEvaluator
- rosetta.protocols.evaluation.SingleValuePoseEvaluator_double_t
- rosetta.protocols.evaluation.PoseEvaluator
- builtins.object
Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(self : handle, tag : str, cst_file : str) -> NoneType
2. __init__(handle, rosetta.protocols.sparta.ChemicalShiftEvaluator) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- applicable(...) from builtins.PyCapsule
- applicable(self : rosetta.protocols.sparta.ChemicalShiftEvaluator, pose : rosetta.core.pose.Pose) -> bool
- apply(...) from builtins.PyCapsule
- apply(self : rosetta.protocols.sparta.ChemicalShiftEvaluator, pose : rosetta.core.pose.Pose) -> float
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.sparta.ChemicalShiftEvaluator, : rosetta.protocols.sparta.ChemicalShiftEvaluator) -> rosetta.protocols.sparta.ChemicalShiftEvaluator
Methods inherited from rosetta.protocols.evaluation.SingleValuePoseEvaluator_double_t:
- name(...) from builtins.PyCapsule
- name(*args, **kwargs)
Overloaded function.
1. name(self : rosetta.protocols.evaluation.SingleValuePoseEvaluator_double_t, : int) -> str
2. name(self : rosetta.protocols.evaluation.PoseEvaluator, : int) -> str
- size(...) from builtins.PyCapsule
- size(*args, **kwargs)
Overloaded function.
1. size(rosetta.protocols.evaluation.SingleValuePoseEvaluator_double_t) -> int
2. size(rosetta.protocols.evaluation.PoseEvaluator) -> int
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class GDB(builtins.object) |
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Methods defined here:
- FORMAT_str_parser(...) from builtins.PyCapsule
- FORMAT_str_parser(self : rosetta.protocols.sparta.GDB, str : str) -> NoneType
- VARS_str_parser(...) from builtins.PyCapsule
- VARS_str_parser(self : rosetta.protocols.sparta.GDB, str : str) -> NoneType
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.protocols.sparta.GDB) -> NoneType
2. __init__(self : rosetta.protocols.sparta.GDB, fileName : str) -> NoneType
3. __init__(self : rosetta.protocols.sparta.GDB, : rosetta.protocols.sparta.GDB) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- addEntry(...) from builtins.PyCapsule
- addEntry(self : rosetta.protocols.sparta.GDB, VarName : str, VarVal : str) -> NoneType
- addRemark(...) from builtins.PyCapsule
- addRemark(self : rosetta.protocols.sparta.GDB, str : str) -> NoneType
- addVAR(...) from builtins.PyCapsule
- addVAR(self : rosetta.protocols.sparta.GDB, VAR_Name : str, FORMAT_Name : str) -> NoneType
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.sparta.GDB, : rosetta.protocols.sparta.GDB) -> rosetta.protocols.sparta.GDB
- checkFormat(...) from builtins.PyCapsule
- checkFormat(self : rosetta.protocols.sparta.GDB, f : str) -> bool
- getData(...) from builtins.PyCapsule
- getData(self : rosetta.protocols.sparta.GDB, DataName : str) -> str
- getEntryCount(...) from builtins.PyCapsule
- getEntryCount(rosetta.protocols.sparta.GDB) -> int
- getResidName(...) from builtins.PyCapsule
- getResidName(self : rosetta.protocols.sparta.GDB, rNum : int) -> str
- isVarFloat(...) from builtins.PyCapsule
- isVarFloat(*args, **kwargs)
Overloaded function.
1. isVarFloat(self : rosetta.protocols.sparta.GDB, index : int) -> bool
2. isVarFloat(self : rosetta.protocols.sparta.GDB, VarName : str) -> bool
- isVarInt(...) from builtins.PyCapsule
- isVarInt(*args, **kwargs)
Overloaded function.
1. isVarInt(self : rosetta.protocols.sparta.GDB, index : int) -> bool
2. isVarInt(self : rosetta.protocols.sparta.GDB, VarName : str) -> bool
- isVarString(...) from builtins.PyCapsule
- isVarString(*args, **kwargs)
Overloaded function.
1. isVarString(self : rosetta.protocols.sparta.GDB, index : int) -> bool
2. isVarString(self : rosetta.protocols.sparta.GDB, VarName : str) -> bool
- loadGDB(...) from builtins.PyCapsule
- loadGDB(self : rosetta.protocols.sparta.GDB, fileName : str) -> NoneType
- presetClass(...) from builtins.PyCapsule
- presetClass(self : rosetta.protocols.sparta.GDB, ClassName : str) -> NoneType
- saveGDB(...) from builtins.PyCapsule
- saveGDB(self : rosetta.protocols.sparta.GDB, fileName : str) -> NoneType
- setData(...) from builtins.PyCapsule
- setData(self : rosetta.protocols.sparta.GDB, DataName : str, DataVal : str) -> NoneType
- setEntry(...) from builtins.PyCapsule
- setEntry(self : rosetta.protocols.sparta.GDB, index : int, VarName : str, VarVal : str) -> NoneType
- setVAR(...) from builtins.PyCapsule
- setVAR(self : rosetta.protocols.sparta.GDB, index : int, VAR_Name : str, FORMAT_Name : str) -> NoneType
- set_plaintext(...) from builtins.PyCapsule
- set_plaintext(rosetta.protocols.sparta.GDB) -> NoneType
Data descriptors defined here:
- DATA
- EMPTY
- Entries
- FORMAT
- FORMAT_str
- GDBfileName
- REMARKS
- VARS
- VARS_str
- VarsNumber
- firstResID
- residList
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class PDB(builtins.object) |
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Methods defined here:
- __init__(...) from builtins.PyCapsule
- __init__(*args, **kwargs)
Overloaded function.
1. __init__(rosetta.protocols.sparta.PDB) -> NoneType
2. __init__(self : rosetta.protocols.sparta.PDB, fileName : str) -> NoneType
3. __init__(self : rosetta.protocols.sparta.PDB, : rosetta.protocols.sparta.PDB) -> NoneType
- __new__(*args, **kwargs) from builtins.type
- Create and return a new object. See help(type) for accurate signature.
- assign(...) from builtins.PyCapsule
- assign(self : rosetta.protocols.sparta.PDB, : rosetta.protocols.sparta.PDB) -> rosetta.protocols.sparta.PDB
- calcPlane(...) from builtins.PyCapsule
- calcPlane(self : rosetta.protocols.sparta.PDB, ringP : rosetta.protocols.sparta.RingData) -> NoneType
- calcSurface(...) from builtins.PyCapsule
- calcSurface(self : rosetta.protocols.sparta.PDB, rad_sol : float) -> NoneType
- calc_ElectricField(...) from builtins.PyCapsule
- calc_ElectricField(rosetta.protocols.sparta.PDB) -> NoneType
- calc_HN_S2(...) from builtins.PyCapsule
- calc_HN_S2(rosetta.protocols.sparta.PDB) -> NoneType
- collect_HN_S2_and_EF(...) from builtins.PyCapsule
- collect_HN_S2_and_EF(rosetta.protocols.sparta.PDB) -> NoneType
- findNeighors(...) from builtins.PyCapsule
- findNeighors(self : rosetta.protocols.sparta.PDB, rad_sol : float) -> NoneType
- getBondAngle(...) from builtins.PyCapsule
- getBondAngle(self : rosetta.protocols.sparta.PDB, a : rosetta.protocols.sparta.PDB_Entry, b : rosetta.protocols.sparta.PDB_Entry, c : rosetta.protocols.sparta.PDB_Entry) -> float
- getChi1(...) from builtins.PyCapsule
- getChi1(self : rosetta.protocols.sparta.PDB, conformerID : int, resNum : int) -> float
- getChi2(...) from builtins.PyCapsule
- getChi2(self : rosetta.protocols.sparta.PDB, conformerID : int, resNum : int) -> float
- getDihedralAngle(...) from builtins.PyCapsule
- getDihedralAngle(self : rosetta.protocols.sparta.PDB, a : rosetta.protocols.sparta.PDB_Entry, b : rosetta.protocols.sparta.PDB_Entry, c : rosetta.protocols.sparta.PDB_Entry, d : rosetta.protocols.sparta.PDB_Entry) -> float
- getDist(...) from builtins.PyCapsule
- getDist(self : rosetta.protocols.sparta.PDB, A : rosetta.protocols.sparta.PDB_Entry, B : rosetta.protocols.sparta.PDB_Entry) -> float
- getEntry(...) from builtins.PyCapsule
- getEntry(*args, **kwargs)
Overloaded function.
1. getEntry(self : rosetta.protocols.sparta.PDB, conformerID : int, rNum : int, aName : str) -> rosetta.protocols.sparta.PDB_Entry
2. getEntry(self : rosetta.protocols.sparta.PDB, conformerID : int, aNum : int) -> rosetta.protocols.sparta.PDB_Entry
- getField(...) from builtins.PyCapsule
- getField(self : rosetta.protocols.sparta.PDB, str : str, index : int) -> str
- getHBondDist(...) from builtins.PyCapsule
- getHBondDist(*args, **kwargs)
Overloaded function.
1. getHBondDist(self : rosetta.protocols.sparta.PDB, D : rosetta.protocols.sparta.PDB_Entry) -> float
2. getHBondDist(self : rosetta.protocols.sparta.PDB, resNum : int, atomName : str) -> float
- getOmega(...) from builtins.PyCapsule
- getOmega(self : rosetta.protocols.sparta.PDB, conformerID : int, resNum : int) -> float
- getOneAAName(...) from builtins.PyCapsule
- getOneAAName(self : rosetta.protocols.sparta.PDB, a : str) -> str
- getOrbitalShift(...) from builtins.PyCapsule
- getOrbitalShift(self : rosetta.protocols.sparta.PDB, conformerID : int, resNum : int, aName : str) -> float
- getPhi(...) from builtins.PyCapsule
- getPhi(self : rosetta.protocols.sparta.PDB, conformerID : int, resNum : int) -> float
- getPsi(...) from builtins.PyCapsule
- getPsi(self : rosetta.protocols.sparta.PDB, conformerID : int, resNum : int) -> float
- getThreeAAName(...) from builtins.PyCapsule
- getThreeAAName(self : rosetta.protocols.sparta.PDB, a : str) -> str
- initHBond(...) from builtins.PyCapsule
- initHBond(*args, **kwargs)
Overloaded function.
1. initHBond(rosetta.protocols.sparta.PDB) -> NoneType
2. initHBond(self : rosetta.protocols.sparta.PDB, DIST : float) -> NoneType
3. initHBond(self : rosetta.protocols.sparta.PDB, DIST : float, ANGLE : float) -> NoneType
- initOrbitalShift(...) from builtins.PyCapsule
- initOrbitalShift(rosetta.protocols.sparta.PDB) -> NoneType
- isAcceptor(...) from builtins.PyCapsule
- isAcceptor(self : rosetta.protocols.sparta.PDB, A : rosetta.protocols.sparta.PDB_Entry) -> rosetta.protocols.sparta.PDB_Entry
- isDonor(...) from builtins.PyCapsule
- isDonor(self : rosetta.protocols.sparta.PDB, D : rosetta.protocols.sparta.PDB_Entry) -> rosetta.protocols.sparta.PDB_Entry
- isSSBonded(...) from builtins.PyCapsule
- isSSBonded(self : rosetta.protocols.sparta.PDB, conformerID : int, resNum : int) -> bool
- loadPDB(...) from builtins.PyCapsule
- loadPDB(*args, **kwargs)
Overloaded function.
1. loadPDB(self : rosetta.protocols.sparta.PDB, fileName : str) -> NoneType
2. loadPDB(self : rosetta.protocols.sparta.PDB, pose : rosetta.core.pose.Pose) -> NoneType
- loadPDB_Entry(...) from builtins.PyCapsule
- loadPDB_Entry(self : rosetta.protocols.sparta.PDB, str : str, entry : rosetta.protocols.sparta.PDB_Entry) -> NoneType
Data descriptors defined here:
- ATOMS
- AtomSurfaceFullList
- AtomSurfacePartList
- Conformers
- EMPTY
- ElectricField
- HBDistList
- HBEnergyList
- HB_DHO_AngleList
- HB_HOA_AngleList
- HN_S2
- NeighborList
- PDBfileName
- ResSurfaceFullList
- ResSurfacePartList
- RingNo
- SpherePointNo
- SurfPrec
- VDW_RAD
- acceptorList
- donorList
- r1
- rN
- residList
- residListOne
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