Bindings for protocols::simple_moves::bb_sampler namespace

Classes
		builtins.object BBDihedralSamplerBase BBDihedralSampler SmallBBSampler SugarBBSampler BBDihedralSampler2D BBDihedralSampler3D BBDihedralSamplerND BBSampleType   class BBDihedralSampler(BBDihedralSamplerBase)     This class functions to hold, access, sample on, and set independent and dependent dihedral data. It is an abstract base class for particular types of data. It should eventually be moved out of here.   get_torsion functions should give either the minima on a set of data or sample via the probability.     Method resolution order: BBDihedralSampler BBDihedralSamplerBase builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler) -> NoneType   2. __init__(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler, int) -> NoneType   doc   3. __init__(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler, torsion_type : int, sampling_type : rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> NoneType   4. __init__(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler, rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler,  : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler) -> rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler clone(...) from builtins.PyCapsule clone(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler) -> rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler get_torsion(...) from builtins.PyCapsule get_torsion(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler, pose : rosetta.core.pose.Pose, resnum : int) -> float name(...) from builtins.PyCapsule name(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler) -> str set_torsion_to_pose(...) from builtins.PyCapsule set_torsion_to_pose(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler, pose : rosetta.core.pose.Pose, resnum : int) -> NoneType   Set torsions to pose Methods inherited from BBDihedralSamplerBase: get_torsion_type(...) from builtins.PyCapsule get_torsion_type(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase) -> int set_sample_type(...) from builtins.PyCapsule set_sample_type(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, sampling_type : rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> NoneType   Set the sampling type.  Default is to sample probabilistically on the data. set_torsion_type(...) from builtins.PyCapsule set_torsion_type(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, torsion_type : int) -> NoneType   Set the torsion type we will be querying.   class BBDihedralSampler2D(BBDihedralSamplerBase)       Method resolution order: BBDihedralSampler2D BBDihedralSamplerBase builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler2D) -> NoneType   2. __init__(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler2D, int) -> NoneType   doc   3. __init__(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler2D, torsion_type : int, sampling_type : rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> NoneType   4. __init__(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler2D, rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler2D) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler2D,  : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler2D) -> rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler2D clone(...) from builtins.PyCapsule clone(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler2D) -> rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler2D get_2d_torsion(...) from builtins.PyCapsule get_2d_torsion(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler2D, pose : rosetta.core.pose.Pose, resnum : int,  : (rosetta.core.id.MainchainTorsionType, float)) -> float   Get a torsion angle dependant on another torsion and torsion angle. name(...) from builtins.PyCapsule name(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler2D) -> str set_2D_torsion_to_pose(...) from builtins.PyCapsule set_2D_torsion_to_pose(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler2D, pose : rosetta.core.pose.Pose, resnum : int,  : (rosetta.core.id.MainchainTorsionType, float)) -> NoneType Methods inherited from BBDihedralSamplerBase: get_torsion_type(...) from builtins.PyCapsule get_torsion_type(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase) -> int set_sample_type(...) from builtins.PyCapsule set_sample_type(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, sampling_type : rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> NoneType   Set the sampling type.  Default is to sample probabilistically on the data. set_torsion_type(...) from builtins.PyCapsule set_torsion_type(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, torsion_type : int) -> NoneType   Set the torsion type we will be querying.   class BBDihedralSampler3D(BBDihedralSamplerBase)       Method resolution order: BBDihedralSampler3D BBDihedralSamplerBase builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler3D) -> NoneType   2. __init__(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler3D, int) -> NoneType   doc   3. __init__(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler3D, torsion_type : int, sampling_type : rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> NoneType   4. __init__(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler3D, rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler3D) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler3D,  : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler3D) -> rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler3D clone(...) from builtins.PyCapsule clone(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler3D) -> rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler3D get_3d_torsion(...) from builtins.PyCapsule get_3d_torsion(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler3D, pose : rosetta.core.pose.Pose, resnum : int,  : (rosetta.core.id.MainchainTorsionType, float),  : (rosetta.core.id.MainchainTorsionType, float)) -> float   Get a torsion angle dependant on two other torsions and torsion angles.  dependendant types and angles are the std::pair. name(...) from builtins.PyCapsule name(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler3D) -> str set_3D_torsion_to_pose(...) from builtins.PyCapsule set_3D_torsion_to_pose(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler3D, pose : rosetta.core.pose.Pose, resnum : int,  : (rosetta.core.id.MainchainTorsionType, float),  : (rosetta.core.id.MainchainTorsionType, float)) -> NoneType Methods inherited from BBDihedralSamplerBase: get_torsion_type(...) from builtins.PyCapsule get_torsion_type(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase) -> int set_sample_type(...) from builtins.PyCapsule set_sample_type(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, sampling_type : rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> NoneType   Set the sampling type.  Default is to sample probabilistically on the data. set_torsion_type(...) from builtins.PyCapsule set_torsion_type(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, torsion_type : int) -> NoneType   Set the torsion type we will be querying.   class BBDihedralSamplerBase(builtins.object)     This class functions to hold, access, sample on, and set independent and dependent dihedral data. It is an abstract base class for particular types of data.   get_torsion functions should give either the minima on a set of data or sample via the probability If you are subclassing, you do not nessessarily need to use the BBSampleType.    Feel free to implement more types. See the SugarBBSampler and RangedBBSampler as examples.   Technically - with now storing the torsion_types as Size (due to waay to many in sugars) - we can now remove the 'BB' part of this whole thing.     Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase) -> NoneType   2. __init__(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, int) -> NoneType   doc   3. __init__(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, torsion_type : int, sampling_type : rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> NoneType   4. __init__(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase,  : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase) -> rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase clone(...) from builtins.PyCapsule clone(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase) -> rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase get_torsion_type(...) from builtins.PyCapsule get_torsion_type(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase) -> int name(...) from builtins.PyCapsule name(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase) -> str set_sample_type(...) from builtins.PyCapsule set_sample_type(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, sampling_type : rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> NoneType   Set the sampling type.  Default is to sample probabilistically on the data. set_torsion_type(...) from builtins.PyCapsule set_torsion_type(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, torsion_type : int) -> NoneType   Set the torsion type we will be querying.   class BBDihedralSamplerND(BBDihedralSamplerBase)       Method resolution order: BBDihedralSamplerND BBDihedralSamplerBase builtins.object Methods defined here: __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerND,  : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerND) -> rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerND clone(...) from builtins.PyCapsule clone(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerND) -> rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerND name(...) from builtins.PyCapsule name(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerND) -> str Methods inherited from BBDihedralSamplerBase: get_torsion_type(...) from builtins.PyCapsule get_torsion_type(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase) -> int set_sample_type(...) from builtins.PyCapsule set_sample_type(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, sampling_type : rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> NoneType   Set the sampling type.  Default is to sample probabilistically on the data. set_torsion_type(...) from builtins.PyCapsule set_torsion_type(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, torsion_type : int) -> NoneType   Set the torsion type we will be querying.   class BBSampleType(builtins.object)       Methods defined here: __eq__(...) from builtins.PyCapsule __eq__(rosetta.protocols.simple_moves.bb_sampler.BBSampleType, rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> bool __hash__(...) from builtins.PyCapsule __hash__(rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> int __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.simple_moves.bb_sampler.BBSampleType, int) -> NoneType   2. __init__(rosetta.protocols.simple_moves.bb_sampler.BBSampleType, int) -> NoneType __int__(...) from builtins.PyCapsule __int__(rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> int __ne__(...) from builtins.PyCapsule __ne__(rosetta.protocols.simple_moves.bb_sampler.BBSampleType, rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> bool __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. __repr__(...) from builtins.PyCapsule __repr__(rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> str Data and other attributes defined here: minima = BBSampleType.minima probability = BBSampleType.probability   class SmallBBSampler(BBDihedralSampler)     A bb sampler that samples within a range of a starting angle.  Similar to small mover. Samples an angle +/- the current angle.  If angle max is not set, will sample any angle.   new_angle = old_angle +/- ( angle_max/2 )     Method resolution order: SmallBBSampler BBDihedralSampler BBDihedralSamplerBase builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, all_ss_angle_max : float) -> NoneType   3. __init__(self : handle, torsion_type : int) -> NoneType   4. __init__(self : handle, torsion_type : int, all_ss_angle_max : float) -> NoneType   5. __init__(handle, rosetta.protocols.simple_moves.bb_sampler.SmallBBSampler) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.simple_moves.bb_sampler.SmallBBSampler,  : rosetta.protocols.simple_moves.bb_sampler.SmallBBSampler) -> rosetta.protocols.simple_moves.bb_sampler.SmallBBSampler clone(...) from builtins.PyCapsule clone(rosetta.protocols.simple_moves.bb_sampler.SmallBBSampler) -> rosetta.protocols.simple_moves.bb_sampler.SmallBBSampler get_angle_max(...) from builtins.PyCapsule get_angle_max(self : rosetta.protocols.simple_moves.bb_sampler.SmallBBSampler, type : str) -> float   Gets the max angle of perturbation for residues with <type>  secondary structure.  (<type> must be 'H', 'E', or 'L'.)    Example:      bbmover.angle_max('H')    See also:      ShearMover      SmallMover get_torsion(...) from builtins.PyCapsule get_torsion(self : rosetta.protocols.simple_moves.bb_sampler.SmallBBSampler, pose : rosetta.core.pose.Pose, resnum : int) -> float set_angle_max(...) from builtins.PyCapsule set_angle_max(*args, **kwargs) Overloaded function.   1. set_angle_max(self : rosetta.protocols.simple_moves.bb_sampler.SmallBBSampler, angle : float) -> NoneType   Sets the maximum angle of perturbation, independent of  secondary structure. new_angle = old_angle +/- ( angle_max/2 )    Example:      bbmover.angle_max(25)  See also:      ShearMover      SmallMover   2. set_angle_max(self : rosetta.protocols.simple_moves.bb_sampler.SmallBBSampler, type : str, angle : float) -> NoneType   Sets the max angle of perturbation for residues with <type>  secondary structure.  (<type> must be 'H', 'E', or 'L'.) new_angle = old_angle +/- ( angle_max/2 )    Example:      bbmover.angle_max('H', 25)    See also:      ShearMover      SmallMover   3. set_angle_max(self : rosetta.protocols.simple_moves.bb_sampler.SmallBBSampler, angle_max_in : rosetta.std.map_char_double) -> NoneType   Sets the max angle of perturbation, for secondary structures  'H', 'E', and 'L'.  new_angle = old_angle +/- ( angle_max/2 ) set_torsion_to_pose(...) from builtins.PyCapsule set_torsion_to_pose(self : rosetta.protocols.simple_moves.bb_sampler.SmallBBSampler, pose : rosetta.core.pose.Pose, resnum : int) -> NoneType Methods inherited from BBDihedralSampler: name(...) from builtins.PyCapsule name(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSampler) -> str Methods inherited from BBDihedralSamplerBase: get_torsion_type(...) from builtins.PyCapsule get_torsion_type(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase) -> int set_sample_type(...) from builtins.PyCapsule set_sample_type(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, sampling_type : rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> NoneType   Set the sampling type.  Default is to sample probabilistically on the data. set_torsion_type(...) from builtins.PyCapsule set_torsion_type(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, torsion_type : int) -> NoneType   Set the torsion type we will be querying.   class SugarBBSampler(BBDihedralSampler)     Sample dihdrals using sugar bb data.     Method resolution order: SugarBBSampler BBDihedralSampler BBDihedralSamplerBase builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(handle, rosetta.core.id.MainchainTorsionType) -> NoneType   doc   3. __init__(handle, rosetta.core.id.MainchainTorsionType, rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> NoneType   doc   4. __init__(self : handle, torsion_type : rosetta.core.id.MainchainTorsionType, sampling_type : rosetta.protocols.simple_moves.bb_sampler.BBSampleType, sampling_step_size : float) -> NoneType   5. __init__(handle, rosetta.protocols.simple_moves.bb_sampler.SugarBBSampler) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.simple_moves.bb_sampler.SugarBBSampler,  : rosetta.protocols.simple_moves.bb_sampler.SugarBBSampler) -> rosetta.protocols.simple_moves.bb_sampler.SugarBBSampler clone(...) from builtins.PyCapsule clone(rosetta.protocols.simple_moves.bb_sampler.SugarBBSampler) -> rosetta.protocols.simple_moves.bb_sampler.SugarBBSampler get_torsion(...) from builtins.PyCapsule get_torsion(self : rosetta.protocols.simple_moves.bb_sampler.SugarBBSampler, pose : rosetta.core.pose.Pose, resnum : int) -> float name(...) from builtins.PyCapsule name(rosetta.protocols.simple_moves.bb_sampler.SugarBBSampler) -> str set_torsion_to_pose(...) from builtins.PyCapsule set_torsion_to_pose(self : rosetta.protocols.simple_moves.bb_sampler.SugarBBSampler, pose : rosetta.core.pose.Pose, resnum : int) -> NoneType   Set torsions to pose Methods inherited from BBDihedralSamplerBase: get_torsion_type(...) from builtins.PyCapsule get_torsion_type(rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase) -> int set_sample_type(...) from builtins.PyCapsule set_sample_type(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, sampling_type : rosetta.protocols.simple_moves.bb_sampler.BBSampleType) -> NoneType   Set the sampling type.  Default is to sample probabilistically on the data. set_torsion_type(...) from builtins.PyCapsule set_torsion_type(self : rosetta.protocols.simple_moves.bb_sampler.BBDihedralSamplerBase, torsion_type : int) -> NoneType   Set the torsion type we will be querying.

Data
		minima = BBSampleType.minima probability = BBSampleType.probability