rosetta.protocols.sewing.scoring
index
(built-in)

Bindings for protocols::sewing::scoring namespace

 
Classes
       
builtins.object
AssemblyScoreFunction
AssemblyScorer
BlosumScorer
ClashScorer
MotifScorer
InterModelMotifScorer
PartnerMotifScorer

 
class AssemblyScoreFunction(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(rosetta.protocols.sewing.scoring.AssemblyScoreFunction) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
add_scorer(...) from builtins.PyCapsule
add_scorer(self : rosetta.protocols.sewing.scoring.AssemblyScoreFunction, score_name : str, weight : float, scorer : rosetta.protocols.sewing.scoring.AssemblyScorer) -> NoneType
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.sewing.scoring.AssemblyScoreFunction,  : rosetta.protocols.sewing.scoring.AssemblyScoreFunction) -> rosetta.protocols.sewing.scoring.AssemblyScoreFunction
get_all_scores(...) from builtins.PyCapsule
get_all_scores(self : rosetta.protocols.sewing.scoring.AssemblyScoreFunction, assembly : rosetta.protocols.sewing.Assembly) -> rosetta.utility.vector1_std_pair_std_string_double_t
score(...) from builtins.PyCapsule
score(self : rosetta.protocols.sewing.scoring.AssemblyScoreFunction, assembly : rosetta.protocols.sewing.Assembly) -> float
 
return the weighted sum of all scorer scores

 
class AssemblyScorer(builtins.object)
     Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(rosetta.protocols.sewing.scoring.AssemblyScorer) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.sewing.scoring.AssemblyScorer,  : rosetta.protocols.sewing.scoring.AssemblyScorer) -> rosetta.protocols.sewing.scoring.AssemblyScorer
score(...) from builtins.PyCapsule
score(self : rosetta.protocols.sewing.scoring.AssemblyScorer, assembly : rosetta.protocols.sewing.Assembly) -> float

 
class BlosumScorer(AssemblyScorer)
    
Method resolution order:
BlosumScorer
AssemblyScorer
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(rosetta.protocols.sewing.scoring.BlosumScorer) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.sewing.scoring.BlosumScorer,  : rosetta.protocols.sewing.scoring.BlosumScorer) -> rosetta.protocols.sewing.scoring.BlosumScorer
score(...) from builtins.PyCapsule
score(self : rosetta.protocols.sewing.scoring.BlosumScorer, assembly : rosetta.protocols.sewing.Assembly) -> float

 
class ClashScorer(AssemblyScorer)
    
Method resolution order:
ClashScorer
AssemblyScorer
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.sewing.scoring.ClashScorer,  : rosetta.protocols.sewing.scoring.ClashScorer) -> rosetta.protocols.sewing.scoring.ClashScorer
score(...) from builtins.PyCapsule
score(self : rosetta.protocols.sewing.scoring.ClashScorer, assembly : rosetta.protocols.sewing.Assembly) -> float

 
class InterModelMotifScorer(MotifScorer)
    
Method resolution order:
InterModelMotifScorer
MotifScorer
AssemblyScorer
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
full_motif_score(...) from builtins.PyCapsule
full_motif_score(self : rosetta.protocols.sewing.scoring.InterModelMotifScorer, assembly : rosetta.protocols.sewing.Assembly) -> float
score(...) from builtins.PyCapsule
score(self : rosetta.protocols.sewing.scoring.InterModelMotifScorer, assembly : rosetta.protocols.sewing.Assembly) -> float

Methods inherited from MotifScorer:
dump_motif(...) from builtins.PyCapsule
dump_motif(self : rosetta.protocols.sewing.scoring.MotifScorer, assembly : rosetta.protocols.sewing.Assembly) -> NoneType
get_score(...) from builtins.PyCapsule
get_score(self : rosetta.protocols.sewing.scoring.MotifScorer, stub1 : rosetta.numeric.xyzTransform_double_t, ss1 : str, aa1 : str, stub2 : rosetta.numeric.xyzTransform_double_t, ss2 : str, aa2 : str) -> float
get_stub(...) from builtins.PyCapsule
get_stub(self : rosetta.protocols.sewing.scoring.MotifScorer, segments : rosetta.utility.vector1_protocols_sewing_SewSegment, segment_num : int, resnum : int) -> rosetta.numeric.xyzTransform_double_t
norm_motif_score(...) from builtins.PyCapsule
norm_motif_score(self : rosetta.protocols.sewing.scoring.MotifScorer, assembly : rosetta.protocols.sewing.Assembly) -> float

Methods inherited from AssemblyScorer:
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.sewing.scoring.AssemblyScorer,  : rosetta.protocols.sewing.scoring.AssemblyScorer) -> rosetta.protocols.sewing.scoring.AssemblyScorer

 
class MotifScorer(AssemblyScorer)
    
Method resolution order:
MotifScorer
AssemblyScorer
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
dump_motif(...) from builtins.PyCapsule
dump_motif(self : rosetta.protocols.sewing.scoring.MotifScorer, assembly : rosetta.protocols.sewing.Assembly) -> NoneType
full_motif_score(...) from builtins.PyCapsule
full_motif_score(self : rosetta.protocols.sewing.scoring.MotifScorer, assembly : rosetta.protocols.sewing.Assembly) -> float
get_score(...) from builtins.PyCapsule
get_score(self : rosetta.protocols.sewing.scoring.MotifScorer, stub1 : rosetta.numeric.xyzTransform_double_t, ss1 : str, aa1 : str, stub2 : rosetta.numeric.xyzTransform_double_t, ss2 : str, aa2 : str) -> float
get_stub(...) from builtins.PyCapsule
get_stub(self : rosetta.protocols.sewing.scoring.MotifScorer, segments : rosetta.utility.vector1_protocols_sewing_SewSegment, segment_num : int, resnum : int) -> rosetta.numeric.xyzTransform_double_t
norm_motif_score(...) from builtins.PyCapsule
norm_motif_score(self : rosetta.protocols.sewing.scoring.MotifScorer, assembly : rosetta.protocols.sewing.Assembly) -> float
score(...) from builtins.PyCapsule
score(self : rosetta.protocols.sewing.scoring.MotifScorer, assembly : rosetta.protocols.sewing.Assembly) -> float

Methods inherited from AssemblyScorer:
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.sewing.scoring.AssemblyScorer,  : rosetta.protocols.sewing.scoring.AssemblyScorer) -> rosetta.protocols.sewing.scoring.AssemblyScorer

 
class PartnerMotifScorer(MotifScorer)
    
Method resolution order:
PartnerMotifScorer
MotifScorer
AssemblyScorer
builtins.object

Methods defined here:
__init__(...) from builtins.PyCapsule
__init__(handle) -> NoneType
__new__(*args, **kwargs) from builtins.type
Create and return a new object.  See help(type) for accurate signature.
interface_motif_score(...) from builtins.PyCapsule
interface_motif_score(self : rosetta.protocols.sewing.scoring.PartnerMotifScorer, assembly : rosetta.protocols.sewing.Assembly) -> float
score(...) from builtins.PyCapsule
score(self : rosetta.protocols.sewing.scoring.PartnerMotifScorer, assembly : rosetta.protocols.sewing.Assembly) -> float

Methods inherited from MotifScorer:
dump_motif(...) from builtins.PyCapsule
dump_motif(self : rosetta.protocols.sewing.scoring.MotifScorer, assembly : rosetta.protocols.sewing.Assembly) -> NoneType
full_motif_score(...) from builtins.PyCapsule
full_motif_score(self : rosetta.protocols.sewing.scoring.MotifScorer, assembly : rosetta.protocols.sewing.Assembly) -> float
get_score(...) from builtins.PyCapsule
get_score(self : rosetta.protocols.sewing.scoring.MotifScorer, stub1 : rosetta.numeric.xyzTransform_double_t, ss1 : str, aa1 : str, stub2 : rosetta.numeric.xyzTransform_double_t, ss2 : str, aa2 : str) -> float
get_stub(...) from builtins.PyCapsule
get_stub(self : rosetta.protocols.sewing.scoring.MotifScorer, segments : rosetta.utility.vector1_protocols_sewing_SewSegment, segment_num : int, resnum : int) -> rosetta.numeric.xyzTransform_double_t
norm_motif_score(...) from builtins.PyCapsule
norm_motif_score(self : rosetta.protocols.sewing.scoring.MotifScorer, assembly : rosetta.protocols.sewing.Assembly) -> float

Methods inherited from AssemblyScorer:
assign(...) from builtins.PyCapsule
assign(self : rosetta.protocols.sewing.scoring.AssemblyScorer,  : rosetta.protocols.sewing.scoring.AssemblyScorer) -> rosetta.protocols.sewing.scoring.AssemblyScorer