Bindings for protocols::sewing::sampling::requirements namespace

Classes
		builtins.object GlobalRequirement GlobalLengthRequirement ResidueRetentionRequirement GlobalRequirementCreator GlobalLengthRequirementCreator ResidueRetentionRequirementCreator IntraSegmentRequirement SegmentDsspRequirement SegmentLengthRequirement IntraSegmentRequirementCreator SegmentDsspRequirementCreator SegmentLengthRequirementCreator RequirementFactory RequirementSet   class GlobalLengthRequirement(GlobalRequirement)       Method resolution order: GlobalLengthRequirement GlobalRequirement builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, valid_dssp_codes : rosetta.std.set_std_string_std_less_std_string_std_allocator_std_string_t, min_length : int, max_length : int) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.sewing.sampling.requirements.GlobalLengthRequirement,  : rosetta.protocols.sewing.sampling.requirements.GlobalLengthRequirement) -> rosetta.protocols.sewing.sampling.requirements.GlobalLengthRequirement satisfies(...) from builtins.PyCapsule satisfies(self : rosetta.protocols.sewing.sampling.requirements.GlobalLengthRequirement, assembly : rosetta.protocols.sewing.Assembly) -> bool   Inverse of violated for this requirement violates(...) from builtins.PyCapsule violates(self : rosetta.protocols.sewing.sampling.requirements.GlobalLengthRequirement, assembly : rosetta.protocols.sewing.Assembly) -> bool   Has the Assembly removed required residues for the specified model Methods inherited from GlobalRequirement: can_be_added_to(...) from builtins.PyCapsule can_be_added_to(self : rosetta.protocols.sewing.sampling.requirements.GlobalRequirement,  : rosetta.protocols.sewing.Assembly) -> bool   Can we add more edges to the Assembly? Base class implementation returns true, so only implement for requirements that require Assemblies of a specific size   class GlobalLengthRequirementCreator(GlobalRequirementCreator)       Method resolution order: GlobalLengthRequirementCreator GlobalRequirementCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.sewing.sampling.requirements.GlobalLengthRequirementCreator,  : rosetta.protocols.sewing.sampling.requirements.GlobalLengthRequirementCreator) -> rosetta.protocols.sewing.sampling.requirements.GlobalLengthRequirementCreator Methods inherited from GlobalRequirementCreator: create_requirement(...) from builtins.PyCapsule create_requirement(rosetta.protocols.sewing.sampling.requirements.GlobalRequirementCreator) -> rosetta.protocols.sewing.sampling.requirements.GlobalRequirement type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.sewing.sampling.requirements.GlobalRequirementCreator) -> str   class GlobalRequirement(builtins.object)       Methods defined here: __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.sewing.sampling.requirements.GlobalRequirement,  : rosetta.protocols.sewing.sampling.requirements.GlobalRequirement) -> rosetta.protocols.sewing.sampling.requirements.GlobalRequirement can_be_added_to(...) from builtins.PyCapsule can_be_added_to(self : rosetta.protocols.sewing.sampling.requirements.GlobalRequirement,  : rosetta.protocols.sewing.Assembly) -> bool   Can we add more edges to the Assembly? Base class implementation returns true, so only implement for requirements that require Assemblies of a specific size satisfies(...) from builtins.PyCapsule satisfies(self : rosetta.protocols.sewing.sampling.requirements.GlobalRequirement, assembly : rosetta.protocols.sewing.Assembly) -> bool   does the Assembly, as a whole, currently satisfy this requirement? violates(...) from builtins.PyCapsule violates(self : rosetta.protocols.sewing.sampling.requirements.GlobalRequirement, assembly : rosetta.protocols.sewing.Assembly) -> bool   does the Assembly violate this segment? Unlike satisfies, violates   class GlobalRequirementCreator(builtins.object)     The Creator class is responsible for creating a particular GlobalRequirement class.     Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.sewing.sampling.requirements.GlobalRequirementCreator) -> NoneType   2. __init__(rosetta.protocols.sewing.sampling.requirements.GlobalRequirementCreator, rosetta.protocols.sewing.sampling.requirements.GlobalRequirementCreator) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.sewing.sampling.requirements.GlobalRequirementCreator,  : rosetta.protocols.sewing.sampling.requirements.GlobalRequirementCreator) -> rosetta.protocols.sewing.sampling.requirements.GlobalRequirementCreator create_requirement(...) from builtins.PyCapsule create_requirement(rosetta.protocols.sewing.sampling.requirements.GlobalRequirementCreator) -> rosetta.protocols.sewing.sampling.requirements.GlobalRequirement type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.sewing.sampling.requirements.GlobalRequirementCreator) -> str   class IntraSegmentRequirement(builtins.object)       Methods defined here: __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirement,  : rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirement) -> rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirement satisfies(...) from builtins.PyCapsule satisfies(self : rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirement, segment : rosetta.protocols.sewing.SewSegment) -> bool   does the segment satisfy this requirement? violates(...) from builtins.PyCapsule violates(self : rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirement, segment : rosetta.protocols.sewing.SewSegment) -> bool   does the segment violate this requirement?   class IntraSegmentRequirementCreator(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirementCreator) -> NoneType   2. __init__(rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirementCreator, rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirementCreator) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirementCreator,  : rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirementCreator) -> rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirementCreator create_requirement(...) from builtins.PyCapsule create_requirement(rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirementCreator) -> rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirement type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirementCreator) -> str   class RequirementFactory(builtins.object)     Create Features Reporters     Methods defined here: __init__(self, /, *args, **kwargs) Initialize self.  See help(type(self)) for accurate signature. __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. factory_register(...) from builtins.PyCapsule factory_register(*args, **kwargs) Overloaded function.   1. factory_register(self : rosetta.protocols.sewing.sampling.requirements.RequirementFactory, creator : rosetta.protocols.sewing.sampling.requirements.GlobalRequirementCreator) -> NoneType   2. factory_register(self : rosetta.protocols.sewing.sampling.requirements.RequirementFactory, creator : rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirementCreator) -> NoneType get_global_requirement(...) from builtins.PyCapsule get_global_requirement(self : rosetta.protocols.sewing.sampling.requirements.RequirementFactory, type_name : str) -> rosetta.protocols.sewing.sampling.requirements.GlobalRequirement get_instance(...) from builtins.PyCapsule get_instance() -> rosetta.protocols.sewing.sampling.requirements.RequirementFactory get_intra_segment_requirement(...) from builtins.PyCapsule get_intra_segment_requirement(self : rosetta.protocols.sewing.sampling.requirements.RequirementFactory, type_name : str) -> rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirement   class RequirementSet(builtins.object)       Methods defined here: __init__(...) from builtins.PyCapsule __init__(rosetta.protocols.sewing.sampling.requirements.RequirementSet) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. add_requirement(...) from builtins.PyCapsule add_requirement(*args, **kwargs) Overloaded function.   1. add_requirement(self : rosetta.protocols.sewing.sampling.requirements.RequirementSet, requirement : rosetta.protocols.sewing.sampling.requirements.GlobalRequirement) -> NoneType   2. add_requirement(self : rosetta.protocols.sewing.sampling.requirements.RequirementSet, index : int, requirement : rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirement) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.sewing.sampling.requirements.RequirementSet,  : rosetta.protocols.sewing.sampling.requirements.RequirementSet) -> rosetta.protocols.sewing.sampling.requirements.RequirementSet can_be_added_to(...) from builtins.PyCapsule can_be_added_to(self : rosetta.protocols.sewing.sampling.requirements.RequirementSet, assembly : rosetta.protocols.sewing.Assembly) -> bool   Check all Global requirements to see if we can add more edges to this Assembly get_max_segments(...) from builtins.PyCapsule get_max_segments(rosetta.protocols.sewing.sampling.requirements.RequirementSet) -> int max_segments(...) from builtins.PyCapsule max_segments(*args, **kwargs) Overloaded function.   1. max_segments(rosetta.protocols.sewing.sampling.requirements.RequirementSet) -> int   2. max_segments(self : rosetta.protocols.sewing.sampling.requirements.RequirementSet, max_segments : int) -> NoneType min_segments(...) from builtins.PyCapsule min_segments(*args, **kwargs) Overloaded function.   1. min_segments(rosetta.protocols.sewing.sampling.requirements.RequirementSet) -> int   2. min_segments(self : rosetta.protocols.sewing.sampling.requirements.RequirementSet, min_segments : int) -> NoneType satisfies(...) from builtins.PyCapsule satisfies(self : rosetta.protocols.sewing.sampling.requirements.RequirementSet, assembly : rosetta.protocols.sewing.Assembly) -> bool   Evaluated if this Assembly satisfies all contained AssemblyRequirements violates(...) from builtins.PyCapsule violates(self : rosetta.protocols.sewing.sampling.requirements.RequirementSet, assembly : rosetta.protocols.sewing.Assembly) -> bool   Evaluate if this Assembly violates any contained AssemblyRequirements   class ResidueRetentionRequirement(GlobalRequirement)       Method resolution order: ResidueRetentionRequirement GlobalRequirement builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, model_id : int) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. add_resnum(...) from builtins.PyCapsule add_resnum(self : rosetta.protocols.sewing.sampling.requirements.ResidueRetentionRequirement, resnum : int) -> NoneType assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.sewing.sampling.requirements.ResidueRetentionRequirement,  : rosetta.protocols.sewing.sampling.requirements.ResidueRetentionRequirement) -> rosetta.protocols.sewing.sampling.requirements.ResidueRetentionRequirement model_id(...) from builtins.PyCapsule model_id(self : rosetta.protocols.sewing.sampling.requirements.ResidueRetentionRequirement, model_id : int) -> NoneType required_resnums(...) from builtins.PyCapsule required_resnums(self : rosetta.protocols.sewing.sampling.requirements.ResidueRetentionRequirement, required_resnums : rosetta.std.set_unsigned_long_std_less_unsigned_long_std_allocator_unsigned_long_t) -> NoneType satisfies(...) from builtins.PyCapsule satisfies(self : rosetta.protocols.sewing.sampling.requirements.ResidueRetentionRequirement, assembly : rosetta.protocols.sewing.Assembly) -> bool   Inverse of violated for this requirement violates(...) from builtins.PyCapsule violates(self : rosetta.protocols.sewing.sampling.requirements.ResidueRetentionRequirement, assembly : rosetta.protocols.sewing.Assembly) -> bool   Has the Assembly removed required residues for the specified model Methods inherited from GlobalRequirement: can_be_added_to(...) from builtins.PyCapsule can_be_added_to(self : rosetta.protocols.sewing.sampling.requirements.GlobalRequirement,  : rosetta.protocols.sewing.Assembly) -> bool   Can we add more edges to the Assembly? Base class implementation returns true, so only implement for requirements that require Assemblies of a specific size   class ResidueRetentionRequirementCreator(GlobalRequirementCreator)       Method resolution order: ResidueRetentionRequirementCreator GlobalRequirementCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.sewing.sampling.requirements.ResidueRetentionRequirementCreator,  : rosetta.protocols.sewing.sampling.requirements.ResidueRetentionRequirementCreator) -> rosetta.protocols.sewing.sampling.requirements.ResidueRetentionRequirementCreator Methods inherited from GlobalRequirementCreator: create_requirement(...) from builtins.PyCapsule create_requirement(rosetta.protocols.sewing.sampling.requirements.GlobalRequirementCreator) -> rosetta.protocols.sewing.sampling.requirements.GlobalRequirement type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.sewing.sampling.requirements.GlobalRequirementCreator) -> str   class SegmentDsspRequirement(IntraSegmentRequirement)       Method resolution order: SegmentDsspRequirement IntraSegmentRequirement builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, valid_dssp_codes : rosetta.std.set_std_string_std_less_std_string_std_allocator_std_string_t) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.sewing.sampling.requirements.SegmentDsspRequirement,  : rosetta.protocols.sewing.sampling.requirements.SegmentDsspRequirement) -> rosetta.protocols.sewing.sampling.requirements.SegmentDsspRequirement satisfies(...) from builtins.PyCapsule satisfies(self : rosetta.protocols.sewing.sampling.requirements.SegmentDsspRequirement, segment : rosetta.protocols.sewing.SewSegment) -> bool   Does the segment have a valid DSSP code? violates(...) from builtins.PyCapsule violates(self : rosetta.protocols.sewing.sampling.requirements.SegmentDsspRequirement, segment : rosetta.protocols.sewing.SewSegment) -> bool   Does the segment have an invalid DSSP code?   class SegmentDsspRequirementCreator(IntraSegmentRequirementCreator)       Method resolution order: SegmentDsspRequirementCreator IntraSegmentRequirementCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.sewing.sampling.requirements.SegmentDsspRequirementCreator,  : rosetta.protocols.sewing.sampling.requirements.SegmentDsspRequirementCreator) -> rosetta.protocols.sewing.sampling.requirements.SegmentDsspRequirementCreator Methods inherited from IntraSegmentRequirementCreator: create_requirement(...) from builtins.PyCapsule create_requirement(rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirementCreator) -> rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirement type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirementCreator) -> str   class SegmentLengthRequirement(IntraSegmentRequirement)       Method resolution order: SegmentLengthRequirement IntraSegmentRequirement builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(*args, **kwargs) Overloaded function.   1. __init__(handle) -> NoneType   2. __init__(self : handle, min_length : int, max_length : int) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.sewing.sampling.requirements.SegmentLengthRequirement,  : rosetta.protocols.sewing.sampling.requirements.SegmentLengthRequirement) -> rosetta.protocols.sewing.sampling.requirements.SegmentLengthRequirement satisfies(...) from builtins.PyCapsule satisfies(self : rosetta.protocols.sewing.sampling.requirements.SegmentLengthRequirement, segment : rosetta.protocols.sewing.SewSegment) -> bool   Do we have the right number of residues in the SewSegment violates(...) from builtins.PyCapsule violates(self : rosetta.protocols.sewing.sampling.requirements.SegmentLengthRequirement, segment : rosetta.protocols.sewing.SewSegment) -> bool   Can we, through more edge additions, get the right number of residues?   class SegmentLengthRequirementCreator(IntraSegmentRequirementCreator)       Method resolution order: SegmentLengthRequirementCreator IntraSegmentRequirementCreator builtins.object Methods defined here: __init__(...) from builtins.PyCapsule __init__(handle) -> NoneType __new__(*args, **kwargs) from builtins.type Create and return a new object.  See help(type) for accurate signature. assign(...) from builtins.PyCapsule assign(self : rosetta.protocols.sewing.sampling.requirements.SegmentLengthRequirementCreator,  : rosetta.protocols.sewing.sampling.requirements.SegmentLengthRequirementCreator) -> rosetta.protocols.sewing.sampling.requirements.SegmentLengthRequirementCreator Methods inherited from IntraSegmentRequirementCreator: create_requirement(...) from builtins.PyCapsule create_requirement(rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirementCreator) -> rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirement type_name(...) from builtins.PyCapsule type_name(rosetta.protocols.sewing.sampling.requirements.IntraSegmentRequirementCreator) -> str